Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 0.0e+00 1551.2 979 100.0
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 0.0e+00 1260.0 991 80.8
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.4e-182 643.7 609 69.1
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.9e-179 634.0 506 72.7
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.3e-177 627.9 489 73.0
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 3.9e-177 626.3 489 73.2
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 1.5e-176 624.4 611 68.2
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 9.6e-176 621.7 629 65.0
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 5.3e-174 615.9 488 72.1
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 5.3e-174 615.9 499 70.3
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 9.9e-173 611.7 501 72.3
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 3.8e-172 609.8 595 65.5
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.9e-171 607.4 674 64.5
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 4.2e-171 606.3 674 62.3
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.7e-170 603.6 677 60.3
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 6.0e-170 602.4 493 69.6
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 2.3e-169 600.5 612 65.0
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.1e-168 598.2 491 69.0
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 1.1e-168 598.2 483 70.8
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.1e-168 598.2 606 62.7
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 3.3e-168 596.7 610 64.6
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 4.3e-168 596.3 621 64.3
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 9.6e-168 595.1 672 61.5
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.6e-167 594.3 600 62.8
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 2.1e-167 594.0 495 72.1
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.8e-167 593.6 491 68.8
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 6.2e-167 592.4 601 60.6
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 1.4e-166 591.3 617 62.6
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 2.4e-166 590.5 668 56.9
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 6.9e-166 589.0 639 63.7
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.0e-165 587.4 607 65.2
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 5.8e-165 585.9 672 61.0
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.3e-164 584.7 625 61.3
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 2.2e-164 583.9 635 63.8
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 2.9e-164 583.6 495 69.7
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.1e-163 581.6 505 67.7
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 3.2e-163 580.1 506 69.0
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 5.5e-163 579.3 502 68.1
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 7.1e-163 578.9 491 70.1
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 9.3e-163 578.6 500 68.2
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.7e-162 577.0 478 68.8
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 2.7e-162 577.0 702 56.6
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.8e-161 574.3 667 59.8
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 3.9e-161 573.2 670 58.8
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.9e-161 573.2 667 59.8
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 8.7e-161 572.0 667 59.8
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 8.7e-161 572.0 667 59.8
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 1.1e-160 571.6 646 56.8
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.9e-160 570.9 700 55.1
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 2.5e-160 570.5 494 70.4
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 7.4e-160 568.9 617 59.6
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 1.3e-159 568.2 673 53.5
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.7e-159 566.6 491 70.5
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 8.2e-159 565.5 506 68.6
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.1e-158 565.1 683 58.4
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 1.4e-158 564.7 508 69.5
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.4e-158 563.9 604 61.6
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.4e-158 563.9 491 69.7
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 2.4e-158 563.9 614 58.6
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.2e-157 561.6 692 55.1
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.5e-157 561.2 672 58.6
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 2.6e-157 560.5 508 68.9
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 1.0e-156 558.5 676 55.8
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.7e-154 550.4 699 57.8
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 1.3e-153 548.1 496 65.1
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 3.0e-153 547.0 694 59.8
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 5.1e-153 546.2 627 60.4
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 5.1e-153 546.2 674 57.0
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 1.1e-152 545.0 501 65.5
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 3.7e-151 540.0 498 67.1
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.4e-150 538.1 507 64.5
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 2.4e-150 537.3 503 62.8
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.6e-149 533.9 601 60.6
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 3.4e-149 533.5 506 62.1
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.0e-148 531.9 1030 45.0
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 8.5e-148 528.9 619 56.9
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 5.5e-147 526.2 619 57.7
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 7.2e-147 525.8 613 59.4
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 2.7e-146 523.9 520 58.7
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 3.0e-145 520.4 516 58.5
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 3.0e-145 520.4 524 58.2
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 3.9e-145 520.0 626 62.3
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 6.7e-145 519.2 633 61.1
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 2.0e-144 517.7 612 60.3
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.6e-144 517.3 493 63.1
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 3.3e-144 516.9 665 53.4
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 5.7e-144 516.2 605 58.0
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.7e-143 514.6 624 59.3
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 3.7e-143 513.5 600 57.7
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 3.1e-142 510.4 627 56.9
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 3.1e-142 510.4 627 56.9
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 9.1e-142 508.8 627 56.8
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.2e-141 508.4 609 56.2
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.9e-139 501.1 693 55.4
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 1.9e-139 501.1 492 60.8
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.2e-138 498.4 664 54.7
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 2.7e-138 497.3 671 53.8
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 9.7e-136 488.8 597 56.6
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.8e-129 468.0 596 59.7
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 2.6e-128 464.2 515 59.4
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 2.1e-114 417.9 531 56.3
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 3.0e-113 414.1 516 51.6
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 2.8e-111 407.5 513 53.6
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 5.7e-104 383.3 326 65.3
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 3.2e-102 377.5 465 60.0
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.9e-95 353.6 289 63.0
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 2.9e-87 327.8 476 54.8
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.6e-85 322.0 208 75.0
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 1.0e-76 292.7 512 44.1
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 3.9e-76 290.8 540 41.7
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 2.2e-71 275.0 496 46.0
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 7.1e-70 270.0 519 43.7
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 7.6e-64 250.0 176 72.2
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.9e-62 245.4 334 65.3
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 2.7e-61 241.5 312 46.2
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 3.5e-61 241.1 442 40.7
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 2.4e-57 228.4 298 51.3
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 5.3e-57 227.3 202 66.3
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 2.6e-56 224.9 176 65.9
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 2.9e-55 221.5 276 57.2
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.3e-51 207.6 320 61.6
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.0e-47 196.4 304 52.0
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.2e-22 111.3 141 49.6
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 1.2e-21 109.8 58 89.7
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 2.0e-19 102.4 78 64.1
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 4.4e-19 101.3 63 73.0
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 6.5e-15 87.4 102 51.0
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 1.1e-14 86.7 68 64.7
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 4.2e-14 84.7 106 51.9
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 4.2e-14 84.7 418 24.4
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 7.2e-14 84.0 90 55.6
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 6.1e-13 80.9 263 32.3
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 3.0e-12 78.6 102 49.0
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 8.8e-12 77.0 414 28.7
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 7.0e-09 67.4 147 47.6
Phvul.009G046200 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 1.5e-06 59.7 90 42.2
Glyma.06G135300 Glycine max HOM05D001023 ORTHO05D000912 2.5e-06 58.9 90 41.1
Medtr3g092510 Medicago truncatula HOM05D001023 ORTHO05D000912 2.5e-06 58.9 90 40.0
Phvul.009G046100 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 2.5e-06 58.9 90 41.1
Glyma.04G229400 Glycine max HOM05D001023 ORTHO05D000912 3.2e-06 58.5 90 40.0
Lalb_Chr11g0067341 Lupinus albus HOM05D001023 ORTHO05D000912 3.2e-06 58.5 94 39.4
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 4.2e-06 58.2 82 43.9
arahy.Tifrunner.gnm1.ann1.863Y68 Arachis hypogaea HOM05D001023 ORTHO05D000912 5.5e-06 57.8 90 40.0
arahy.Tifrunner.gnm1.ann1.LLV436 Arachis hypogaea HOM05D001023 ORTHO05D000912 5.5e-06 57.8 90 40.0
Ca_16768_v3 Cicer arietinum L. HOM05D001023 ORTHO05D000912 5.5e-06 57.8 90 40.0
VMungo1309G1740 Vigna mungo HOM05D001023 ORTHO05D000912 5.5e-06 57.8 90 40.0
Lalb_Chr23g0271881 Lupinus albus HOM05D001023 ORTHO05D000912 7.2e-06 57.4 94 39.4
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 9.4e-06 57.0 94 36.2
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 9.4e-06 57.0 94 36.2


User provided reference genes

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