Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2602 Ceratophyllum demersum HOM05D006314 ORTHO05D007970 1.8e-135 486.1 276 100.0
Ah.14g088200 Amaranthus hybridus HOM05D006314 ORTHO05D007970 2.1e-72 276.6 229 72.5
Hund21374 Selenicereus undatus HOM05D006314 ORTHO05D007970 1.8e-71 273.5 222 70.7
Nn1g03656 Nelumbo nucifera HOM05D006314 ORTHO05D007970 2.0e-70 270.0 232 70.7
EL10Ac8g19905 Beta vulgaris HOM05D006314 ORTHO05D007970 1.3e-69 267.3 256 66.0
AL6G48810 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 2.2e-69 266.5 271 57.2
Solyc03g031560.4 Solanum lycopersicum HOM05D006314 ORTHO05D007970 4.9e-69 265.4 256 67.6
AT4G05210 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 3.2e-68 262.7 235 71.1
Aqoxy5G01372 Aquilegia oxysepala HOM05D006314 ORTHO05D007970 5.4e-68 261.9 230 67.0
CiPaw.09G085200 Carya illinoinensis HOM05D006314 ORTHO05D007970 5.4e-68 261.9 265 58.1
CiPaw.09G086300 Carya illinoinensis HOM05D006314 ORTHO05D007970 7.1e-68 261.5 248 60.5
AL7G32880 Arabidopsis lyrata HOM05D006314 ORTHO05D007970 1.6e-67 260.4 230 71.3
AT4G21220 Arabidopsis thaliana HOM05D006314 ORTHO05D007970 1.6e-67 260.4 230 71.7
BcaC04g21385 Brassica carinata HOM05D006314 ORTHO05D007970 2.1e-67 260.0 243 70.0
C09p32430 Brassica napus HOM05D006314 ORTHO05D007970 2.1e-67 260.0 243 70.0
BolC9t56088H Brassica oleracea HOM05D006314 ORTHO05D007970 2.1e-67 260.0 243 70.0
ATR0618G448 Amborella trichopoda HOM05D006314 ORTHO05D007970 3.5e-67 259.2 277 58.5
A09p25520 Brassica napus HOM05D006314 ORTHO05D007970 3.5e-67 259.2 243 70.0
BcaB01g01893 Brassica carinata HOM05D006314 ORTHO05D007970 4.6e-67 258.8 243 70.0
BraA09t38127Z Brassica rapa HOM05D006314 ORTHO05D007970 1.3e-66 257.3 243 69.5
Sabra04G0024200 Salix brachista HOM05D006314 ORTHO05D007970 2.3e-66 256.5 273 55.7
Carub.0007s2019 Capsella rubella HOM05D006314 ORTHO05D007970 6.7e-66 255.0 230 70.9
Manes.14G141100 Manihot esculenta HOM05D006314 ORTHO05D007970 6.7e-66 255.0 231 67.5
Cfa021643 Carpinus fangiana HOM05D006314 ORTHO05D007970 3.7e-64 249.2 248 61.3
Potri.004G039400 Populus trichocarpa HOM05D006314 ORTHO05D007970 4.8e-64 248.8 231 61.5
SEGI_37493 Sequoiadendron giganteum HOM05D006314 ORTHO05D007970 4.8e-64 248.8 247 55.5
Gorai.010G176200 Gossypium raimondii HOM05D006314 ORTHO05D007970 6.2e-64 248.4 247 58.3
GSVIVG01012621001 Vitis vinifera HOM05D006314 ORTHO05D007970 1.4e-63 247.3 231 57.6
Prupe.4G027100 Prunus persica HOM05D006314 ORTHO05D007970 1.8e-63 246.9 231 61.0
ECA236G4636 Erigeron canadensis HOM05D006314 ORTHO05D007970 1.2e-62 244.2 222 63.5
QL05p075316 Quercus lobata HOM05D006314 ORTHO05D007970 1.2e-62 244.2 263 55.1
Gohir.A06G145000 Gossypium hirsutum HOM05D006314 ORTHO05D007970 1.5e-62 243.8 247 53.0
SalBow8G4748 Salvia bowleyana HOM05D006314 ORTHO05D007970 1.3e-61 240.7 274 52.2
HanXRQChr05g0130041 Helianthus annuus HOM05D006314 ORTHO05D007970 8.4e-61 238.0 244 58.2
Cpa.g.sc81.24 Carica papaya HOM05D006314 ORTHO05D007970 2.4e-60 236.5 239 61.5
Eucgr.D00832 Eucalyptus grandis HOM05D006314 ORTHO05D007970 7.1e-60 235.0 251 64.1
SGA_v2.0_scaffold7G03887 Striga asiatica HOM05D006314 ORTHO05D007970 7.1e-60 235.0 228 57.9
Aa31LG9G9230 Aethionema arabicum HOM05D006314 ORTHO05D007970 1.6e-59 233.8 270 60.4
CANSAT56G1066 Cannabis sativa HOM05D006314 ORTHO05D007970 4.6e-59 232.3 232 66.4
PGR031G0385 Punica granatum HOM05D006314 ORTHO05D007970 4.6e-59 232.3 258 61.6
Ciclev10018286m.g Citrus clementina HOM05D006314 ORTHO05D007970 1.0e-58 231.1 231 62.8
Duzib235G0913 Durio zibethinus HOM05D006314 ORTHO05D007970 1.8e-58 230.3 249 50.6
COL.COLO4_31719 Corchorus olitorius HOM05D006314 ORTHO05D007970 2.3e-58 229.9 222 58.1
CAN.G404.73 Capsicum annuum HOM05D006314 ORTHO05D007970 3.0e-58 229.6 238 57.6
HPP92_009390 Vanilla planifolia HOM05D006314 ORTHO05D007970 3.0e-58 229.6 228 60.5
HPP92_009395 Vanilla planifolia HOM05D006314 ORTHO05D007970 6.7e-58 228.4 228 62.3
Actinidia26953 Actinidia chinensis HOM05D006314 ORTHO05D007970 2.5e-57 226.5 169 65.1
FAN21G1433 Fragaria x ananassa HOM05D006314 ORTHO05D007970 2.5e-57 226.5 240 59.2
Migut.M01276 Erythranthe guttata HOM05D006314 ORTHO05D007970 2.1e-56 223.4 237 55.3
Lsat_1_v5_gn_7_17861 Lactuca sativa HOM05D006314 ORTHO05D007970 2.8e-56 223.0 270 52.2
Thhalv10025838m.g Eutrema salsugineum HOM05D006314 ORTHO05D007970 6.2e-56 221.9 230 64.8
Haze_06726 Corylus avellana HOM05D006314 ORTHO05D007970 8.2e-56 221.5 277 44.4
Haze_06729 Corylus avellana HOM05D006314 ORTHO05D007970 1.4e-55 220.7 173 61.8
PSO541G6217 Papaver somniferum HOM05D006314 ORTHO05D007970 4.0e-55 219.2 283 43.1
DCAR_004187 Daucus carota HOM05D006314 ORTHO05D007970 3.4e-54 216.1 229 64.2
PSO675G3227 Papaver somniferum HOM05D006314 ORTHO05D007970 3.4e-54 216.1 283 43.1
MD05G1340500 Malus domestica HOM05D006314 ORTHO05D007970 5.8e-54 215.3 264 50.0
Actinidia05538 Actinidia chinensis HOM05D006314 ORTHO05D007970 1.7e-53 213.8 223 65.0
CARHR227820 Cardamine hirsuta HOM05D006314 ORTHO05D007970 1.7e-53 213.8 229 64.2
RcHm_v2.0_Chr5g0004131 Rosa chinensis HOM05D006314 ORTHO05D007970 1.1e-52 211.1 252 55.2
Sopen03g005440 Solanum pennellii HOM05D006314 ORTHO05D007970 1.4e-52 210.7 242 61.2
MBI02_g34312_MAGBIO Magnolia biondii HOM05D006314 ORTHO05D007970 1.9e-52 210.3 232 54.7
FAN25G2977 Fragaria x ananassa HOM05D006314 ORTHO05D007970 7.1e-52 208.4 271 53.9
CsaV3_6G049280 Cucumis sativus L. HOM05D006314 ORTHO05D007970 2.1e-51 206.8 230 53.0
vmacro03713 Vaccinium macrocarpon HOM05D006314 ORTHO05D007970 7.9e-51 204.9 195 66.7
Mapoly0013s0096 Marchantia polymorpha HOM05D006314 ORTHO05D007970 1.3e-50 204.1 257 48.2
FvH4_3g02730 Fragaria vesca HOM05D006314 ORTHO05D007970 3.0e-50 203.0 224 59.8
Nitab4.5_0004428g0040 Nicotiana tabacum HOM05D006314 ORTHO05D007970 1.5e-49 200.7 231 47.2
Zm00001eb306890 Zea mays HOM05D006314 ORTHO05D007970 1.5e-49 200.7 231 60.6
Glyma.01G240700 Glycine max HOM05D006314 ORTHO05D007970 3.3e-49 199.5 242 52.9
Oeu002711.1 Olea europaea HOM05D006314 ORTHO05D007970 9.7e-49 198.0 230 54.3
MELO3C007369.2 Cucumis melo HOM05D006314 ORTHO05D007970 1.6e-48 197.2 214 56.1
Lj1A1224T36 Lonicera japonica HOM05D006314 ORTHO05D007970 2.2e-48 196.8 214 61.2
THA.LOC104812945 Tarenaya hassleriana HOM05D006314 ORTHO05D007970 2.2e-48 196.8 259 55.6
ClCG01G022220 Citrullus lanatus HOM05D006314 ORTHO05D007970 2.8e-48 196.4 214 60.7
TWI38G0264 Tripterygium wilfordii HOM05D006314 ORTHO05D007970 3.7e-48 196.1 230 57.0
Gohir.D06G151200 Gossypium hirsutum HOM05D006314 ORTHO05D007970 4.8e-48 195.7 177 57.1
Phvul.002G049200 Phaseolus vulgaris HOM05D006314 ORTHO05D007970 1.8e-47 193.7 224 55.4
VMungo1215G0781 Vigna mungo HOM05D006314 ORTHO05D007970 3.1e-47 193.0 235 53.2
Lj1g0010466 Lotus japonicus HOM05D006314 ORTHO05D007970 5.3e-47 192.2 242 50.8
Medtr7g047630 Medicago truncatula HOM05D006314 ORTHO05D007970 1.0e-45 188.0 241 51.0
Medtr7g451810 Medicago truncatula HOM05D006314 ORTHO05D007970 1.0e-45 188.0 241 51.0
AUR62012635 Chenopodium quinoa HOM05D006314 ORTHO05D007970 1.7e-45 187.2 252 52.8
Cc00_g17320 Coffea canephora HOM05D006314 ORTHO05D007970 2.2e-45 186.8 230 57.4
AagrBONN_evm.TU.Sc2ySwM_228.2540 Anthoceros agrestis HOM05D006314 ORTHO05D007970 5.5e-44 182.2 230 53.0
Sp6g03780 Schrenkiella parvula HOM05D006314 ORTHO05D007970 7.2e-44 181.8 235 59.1
TPR.G10185 Trifolium pratense HOM05D006314 ORTHO05D007970 2.1e-43 180.3 224 51.3
Thecc.06G213300 Theobroma cacao HOM05D006314 ORTHO05D007970 6.7e-42 175.3 182 61.0
CBR_g20160 Chara braunii HOM05D006314 ORTHO05D007970 1.1e-41 174.5 169 49.7
Ca_07429_v3 Cicer arietinum L. HOM05D006314 ORTHO05D007970 3.3e-41 172.9 215 52.6
PGSC0003DMG400005049 Solanum tuberosum HOM05D006314 ORTHO05D007970 4.3e-41 172.6 230 58.3
Sc05g0008810 Simmondsia chinensis HOM05D006314 ORTHO05D007970 9.7e-41 171.4 214 55.1
AUR62022021 Chenopodium quinoa HOM05D006314 ORTHO05D007970 1.3e-40 171.0 246 52.0
Lalb_Chr16g0376341 Lupinus albus HOM05D006314 ORTHO05D007970 1.7e-40 170.6 225 55.6
Psat3g152680 Pisum sativum HOM05D006314 ORTHO05D007970 6.3e-40 168.7 204 60.3
Rhsim13G0158200 Rhododendron simsii HOM05D006314 ORTHO05D007970 1.4e-39 167.5 242 48.3
Glyma.11G002900 Glycine max HOM05D006314 ORTHO05D007970 5.3e-39 165.6 159 54.7
arahy.Tifrunner.gnm1.ann1.937J55 Arachis hypogaea HOM05D006314 ORTHO05D007970 1.5e-38 164.1 214 57.5
arahy.Tifrunner.gnm1.ann1.PEH28W Arachis hypogaea HOM05D006314 ORTHO05D007970 1.5e-38 164.1 214 57.5
Hma1.2p1_0729F.1_g209630 Hydrangea macrophylla HOM05D006314 ORTHO05D007970 4.5e-38 162.5 191 47.1
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 1.0e-37 161.4 148 56.8
Dinv17838 Davidia involucrata HOM05D006314 ORTHO05D007970 2.9e-37 159.8 142 76.8
Pp3c4_25780 Physcomitrium patens HOM05D006314 ORTHO05D007970 1.9e-36 157.1 241 49.0
Nn5g27983 Nelumbo nucifera HOM05D006314 ORTHO05D007970 2.3e-34 150.2 122 61.5
Nitab4.5_0000900g0100 Nicotiana tabacum HOM05D006314 ORTHO05D007970 2.0e-33 147.1 238 39.1
TAR627G0699 Trochodendron aralioides HOM05D006314 ORTHO05D007970 1.8e-31 140.6 107 63.6
PRCOL_00005452 Prasinoderma coloniale HOM05D006314 ORTHO05D007970 1.0e-29 134.8 169 42.0
CSS0045332 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 2.2e-29 133.7 115 57.4
Sed0025568 Sechium edule HOM05D006314 ORTHO05D007970 5.7e-25 119.0 252 40.9
SMO004G0010 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 2.2e-21 107.1 240 31.2
Peaxi162Scf00781g00047 Petunia axillaris HOM05D006314 ORTHO05D007970 5.0e-21 105.9 160 38.8
MSTRG.16127 Avicennia marina HOM05D006314 ORTHO05D007970 1.2e-17 94.7 116 44.0
Os07g0134400 Oryza sativa ssp. japonica HOM05D006314 ORTHO05D007970 7.0e-15 85.5 116 64.7
CSS0018641 Camellia sinensis var. sinensis HOM05D006314 ORTHO05D007970 9.1e-15 85.1 103 70.9
FAN25G3594 Fragaria x ananassa HOM05D006314 ORTHO05D007970 1.8e-10 70.9 44 72.7
SMO361G0013 Selaginella moellendorffii HOM05D006314 ORTHO05D007970 2.6e-09 67.0 219 26.9
Medtr7g047660 Medicago truncatula HOM05D052963 ORTHO05D007970 8.3e-08 62.0 51 58.8
FvH4_3g02750 Fragaria vesca HOM05D006314 ORTHO05D007970 2.7e-06 57.0 43 65.1


User provided reference genes

Program Settings