Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.3e-72 275.4 132 100.0
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.2e-41 173.3 100 87.0
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 1.2e-41 173.3 128 63.3
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.8e-38 162.2 128 60.9
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 8.2e-38 160.6 128 60.2
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 1.8e-37 159.5 128 59.4
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 2.4e-37 159.1 128 58.6
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 3.1e-37 158.7 128 59.4
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 3.1e-37 158.7 128 58.6
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 3.1e-37 158.7 128 59.4
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 4.1e-37 158.3 124 61.3
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 4.1e-37 158.3 128 59.4
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 1.5e-36 156.4 128 57.8
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 1.5e-36 156.4 128 57.0
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 2.0e-36 156.0 124 58.9
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 2.0e-36 156.0 128 58.6
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.0e-36 156.0 128 56.2
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.6e-36 155.6 123 58.5
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 2.6e-36 155.6 128 57.8
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 2.6e-36 155.6 124 58.9
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 3.4e-36 155.2 129 58.1
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.4e-36 155.2 128 58.6
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 4.5e-36 154.8 128 57.0
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 5.9e-36 154.5 128 58.6
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 5.9e-36 154.5 126 57.9
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 7.6e-36 154.1 128 57.0
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 7.6e-36 154.1 130 55.4
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 1.0e-35 153.7 128 57.0
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 1.3e-35 153.3 123 56.9
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.7e-35 152.9 128 55.5
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 1.7e-35 152.9 128 56.2
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 2.2e-35 152.5 126 57.1
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 2.9e-35 152.1 128 56.2
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 2.9e-35 152.1 129 57.4
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 3.8e-35 151.8 122 58.2
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 3.8e-35 151.8 124 57.3
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 3.8e-35 151.8 128 58.6
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 5.0e-35 151.4 124 58.1
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 8.5e-35 150.6 123 57.7
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 1.1e-34 150.2 124 57.3
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.1e-34 150.2 124 57.3
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.4e-34 149.8 124 57.3
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.9e-34 149.4 128 54.7
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 2.5e-34 149.1 128 55.5
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 3.2e-34 148.7 124 56.5
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 3.2e-34 148.7 128 53.9
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 5.5e-34 147.9 128 53.9
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 5.5e-34 147.9 128 53.9
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 5.5e-34 147.9 145 49.7
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 5.5e-34 147.9 128 54.7
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 7.2e-34 147.5 128 55.5
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 7.2e-34 147.5 128 55.5
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 9.3e-34 147.1 128 54.7
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 9.3e-34 147.1 128 54.7
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 9.3e-34 147.1 123 56.9
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 1.2e-33 146.7 123 54.5
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 1.2e-33 146.7 128 53.1
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 1.6e-33 146.4 128 52.3
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.6e-33 146.4 124 56.5
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.6e-33 146.4 124 54.8
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.1e-33 146.0 128 54.7
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.1e-33 146.0 128 54.7
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 2.1e-33 146.0 128 54.7
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.7e-33 145.6 128 53.9
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.7e-33 145.6 128 54.7
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 3.6e-33 145.2 123 53.7
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 3.6e-33 145.2 128 53.1
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 3.6e-33 145.2 128 53.1
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 3.6e-33 145.2 128 53.1
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 3.6e-33 145.2 128 54.7
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 3.6e-33 145.2 128 53.9
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 3.6e-33 145.2 128 53.1
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 4.6e-33 144.8 128 53.9
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 4.6e-33 144.8 128 53.9
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 4.6e-33 144.8 128 53.9
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 4.6e-33 144.8 131 52.7
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.6e-33 144.8 128 53.9
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 6.1e-33 144.4 128 53.9
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 6.1e-33 144.4 124 57.3
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 6.1e-33 144.4 128 53.1
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 6.1e-33 144.4 122 54.1
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 7.9e-33 144.1 128 53.1
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 1.0e-32 143.7 123 54.5
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.0e-32 143.7 124 57.3
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.0e-32 143.7 128 52.3
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.3e-32 143.3 128 53.1
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.3e-32 143.3 131 51.9
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 1.8e-32 142.9 129 52.7
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 1.8e-32 142.9 129 52.7
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 1.8e-32 142.9 129 52.7
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.8e-32 142.9 129 52.7
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 1.8e-32 142.9 130 53.8
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 1.8e-32 142.9 128 52.3
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 1.8e-32 142.9 124 54.8
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 2.3e-32 142.5 124 54.0
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 3.0e-32 142.1 122 51.6
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 3.0e-32 142.1 128 54.7
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 3.0e-32 142.1 125 55.2
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 3.0e-32 142.1 128 53.1
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 3.9e-32 141.7 124 54.8
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 3.9e-32 141.7 128 53.1
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 3.9e-32 141.7 128 53.1
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 3.9e-32 141.7 124 54.8
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.1e-32 141.4 124 55.6
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 8.7e-32 140.6 124 52.4
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 8.7e-32 140.6 138 50.7
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.1e-31 140.2 124 54.8
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.1e-31 140.2 131 52.7
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 1.5e-31 139.8 129 51.9
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.5e-31 139.8 128 52.3
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.5e-31 139.8 124 53.2
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 1.5e-31 139.8 124 54.0
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 1.5e-31 139.8 131 50.4
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.5e-31 139.0 128 50.8
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 3.3e-31 138.7 130 52.3
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 4.3e-31 138.3 138 48.6
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 4.3e-31 138.3 124 53.2
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 1.3e-30 136.7 124 51.6
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 1.7e-30 136.3 123 54.5
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.7e-30 136.3 138 50.0
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 2.2e-30 136.0 139 50.4
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 2.8e-30 135.6 124 55.6
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 4.8e-30 134.8 161 46.0
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 1.4e-29 133.3 112 57.1
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 2.4e-29 132.5 129 48.1
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 7.7e-28 127.5 129 48.8
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 1.7e-27 126.3 123 49.6
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.7e-27 126.3 127 51.2
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 9.4e-26 120.6 131 47.3
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 3.3e-23 112.1 79 63.3
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 2.8e-22 109.0 77 61.0
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 2.5e-18 95.9 114 47.4
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 3.6e-17 92.0 122 39.3
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.3e-16 89.4 78 51.3
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 2.2e-14 82.8 116 40.5
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 4.1e-13 78.6 58 58.6
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 5.3e-13 78.2 123 37.4
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.6e-12 76.6 123 33.3
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.6e-12 76.6 75 56.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 4.5e-12 75.1 56 53.6
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 1.5e-10 70.1 124 29.0
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 7.5e-07 57.8 39 59.0


User provided reference genes

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