Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1742 Ceratophyllum demersum HOM05D000169 ORTHO05D129971 1.3e-70 269.6 135 100.0
CDE05G1004 Ceratophyllum demersum HOM05D000417 ORTHO05D000342 4.0e-16 88.6 55 78.2
Rhsim12G0025100 Rhododendron simsii HOM05D000169 ORTHO05D008642 9.6e-10 67.4 55 56.4
Migut.K01282 Erythranthe guttata HOM05D000169 ORTHO05D008642 1.3e-09 67.0 53 54.7
Hma1.2p1_0275F.1_g110700 Hydrangea macrophylla HOM05D000169 ORTHO05D008642 1.3e-09 67.0 55 56.4
Sc14g0009080 Simmondsia chinensis HOM05D000169 ORTHO05D008642 2.1e-09 66.2 97 42.3
THA.LOC104807135 Tarenaya hassleriana HOM05D000169 ORTHO05D008642 2.8e-09 65.9 55 54.5
TAR383G0263 Trochodendron aralioides HOM05D000169 ORTHO05D008642 3.7e-09 65.5 55 54.5
EL10Ac6g13515 Beta vulgaris HOM05D000169 ORTHO05D008642 4.8e-09 65.1 55 52.7
DCAR_026457 Daucus carota HOM05D000169 ORTHO05D008642 4.8e-09 65.1 55 52.7
SalBow1G2914 Salvia bowleyana HOM05D000169 ORTHO05D008642 4.8e-09 65.1 53 52.8
Ah.03g136090 Amaranthus hybridus HOM05D000169 ORTHO05D008642 6.2e-09 64.7 55 50.9
BcaC04g22740 Brassica carinata HOM05D000169 ORTHO05D008642 8.2e-09 64.3 55 52.7
BcaC06g31920 Brassica carinata HOM05D000169 ORTHO05D008642 8.2e-09 64.3 55 52.7
C09p15750 Brassica napus HOM05D000169 ORTHO05D008642 8.2e-09 64.3 55 52.7
BolC9t54487H Brassica oleracea HOM05D000169 ORTHO05D008642 8.2e-09 64.3 55 52.7
BraA09t36973Z Brassica rapa HOM05D000169 ORTHO05D008642 8.2e-09 64.3 55 52.7
Thhalv10023400m.g Eutrema salsugineum HOM05D000169 ORTHO05D008642 8.2e-09 64.3 55 52.7
Aqoxy7G02607 Aquilegia oxysepala HOM05D000169 ORTHO05D008642 1.1e-08 63.9 55 52.7
Potri.001G055700 Populus trichocarpa HOM05D000169 ORTHO05D008642 1.1e-08 63.9 55 54.5
Sp2g01680 Schrenkiella parvula HOM05D000169 ORTHO05D008642 1.1e-08 63.9 55 52.7
AUR62005630 Chenopodium quinoa HOM05D000169 ORTHO05D008642 1.4e-08 63.5 55 49.1
AUR62028918 Chenopodium quinoa HOM05D000169 ORTHO05D008642 1.4e-08 63.5 55 49.1
Manes.13G010800 Manihot esculenta HOM05D000169 ORTHO05D008642 1.8e-08 63.2 55 52.7
Nitab4.5_0010051g0010 Nicotiana tabacum HOM05D000169 ORTHO05D008642 1.8e-08 63.2 55 54.5
Sabra01G0040200 Salix brachista HOM05D000169 ORTHO05D008642 1.8e-08 63.2 55 54.5
SGA_v2.0_scaffold148G36474 Striga asiatica HOM05D000169 ORTHO05D008642 1.8e-08 63.2 94 37.2
GSVIVG01010497001 Vitis vinifera HOM05D000169 ORTHO05D008642 1.8e-08 63.2 55 52.7
ATR0626G130 Amborella trichopoda HOM05D000169 ORTHO05D008642 2.4e-08 62.8 55 52.7
Ciclev10031133m.g Citrus clementina HOM05D000169 ORTHO05D008642 2.4e-08 62.8 55 49.1
Oeu062149.1 Olea europaea HOM05D000169 ORTHO05D008642 2.4e-08 62.8 53 56.6
CANSAT01G2063 Cannabis sativa HOM05D000169 ORTHO05D008642 4.0e-08 62.0 96 38.5
CARHR048740 Cardamine hirsuta HOM05D000169 ORTHO05D008642 5.3e-08 61.6 55 50.9
MBI13_g33573_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D008642 5.3e-08 61.6 55 50.9
Nn8g41242 Nelumbo nucifera HOM05D000169 ORTHO05D008642 5.3e-08 61.6 55 50.9
Nitab4.5_0000565g0200 Nicotiana tabacum HOM05D000169 ORTHO05D008642 5.3e-08 61.6 55 52.7
Os04g0310800 Oryza sativa ssp. japonica HOM05D000169 ORTHO05D008642 5.3e-08 61.6 55 50.9
PSO384G1368 Papaver somniferum HOM05D000169 ORTHO05D008642 5.3e-08 61.6 55 49.1
Prupe.1G224800 Prunus persica HOM05D000169 ORTHO05D008642 5.3e-08 61.6 96 41.7
Actinidia30640 Actinidia chinensis HOM05D000169 ORTHO05D000542 6.9e-08 61.2 55 49.1
AL2G12750 Arabidopsis lyrata HOM05D000169 ORTHO05D008642 6.9e-08 61.2 55 50.9
AT1G62940 Arabidopsis thaliana HOM05D000169 ORTHO05D008642 6.9e-08 61.2 55 50.9
Carub.0002s0208 Capsella rubella HOM05D000169 ORTHO05D008642 6.9e-08 61.2 55 50.9
Oeu010240.1 Olea europaea HOM05D000169 ORTHO05D008642 6.9e-08 61.2 53 54.7
RcHm_v2.0_Chr4g0430101 Rosa chinensis HOM05D000169 ORTHO05D008642 6.9e-08 61.2 96 39.6
CSS0031390 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D008642 9.0e-08 60.8 55 49.1
CSS0046296 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D008642 9.0e-08 60.8 55 49.1
COL.COLO4_20414 Corchorus olitorius HOM05D000169 ORTHO05D008642 9.0e-08 60.8 55 49.1
HanXRQChr03g0082071 Helianthus annuus HOM05D000169 ORTHO05D000542 9.0e-08 60.8 55 52.7
PSO250G0048 Papaver somniferum HOM05D000169 ORTHO05D008642 9.0e-08 60.8 55 49.1
Solyc02g088710.3 Solanum lycopersicum HOM05D000169 ORTHO05D008642 9.0e-08 60.8 55 54.5
Sopen02g033420 Solanum pennellii HOM05D000169 ORTHO05D008642 9.0e-08 60.8 55 54.5
unitig_32.g11771 Utricularia gibba HOM05D000169 ORTHO05D008642 9.0e-08 60.8 96 38.5
Atru.chr11.2337 Acer truncatum HOM05D000169 ORTHO05D008642 1.2e-07 60.5 55 47.3
Aa31sc65G40 Aethionema arabicum HOM05D000169 ORTHO05D008642 1.2e-07 60.5 97 38.1
CAN.G206.215 Capsicum annuum HOM05D000169 ORTHO05D008642 1.2e-07 60.5 55 54.5
CDE04G3513 Ceratophyllum demersum HOM05D000169 ORTHO05D008642 1.2e-07 60.5 55 50.9
SEGI_02383 Sequoiadendron giganteum HOM05D000169 ORTHO05D008642 1.2e-07 60.5 92 39.1
FAN07G1175 Fragaria x ananassa HOM05D000169 ORTHO05D008642 1.5e-07 60.1 96 39.6
MD13G1120400 Malus domestica HOM05D000169 ORTHO05D008642 1.5e-07 60.1 104 38.5
vmacro01055 Vaccinium macrocarpon HOM05D000169 ORTHO05D008642 1.5e-07 60.1 55 49.1
Zm00001eb083110 Zea mays HOM05D000169 ORTHO05D008642 1.5e-07 60.1 53 50.9
Sed0021168 Sechium edule HOM05D000169 ORTHO05D008642 2.0e-07 59.7 92 39.1
Lj6g0009514 Lotus japonicus HOM05D000169 ORTHO05D008642 2.6e-07 59.3 96 39.6
Manes.12G010100 Manihot esculenta HOM05D000169 ORTHO05D008642 2.6e-07 59.3 55 49.1
Sabra03G0137800 Salix brachista HOM05D000169 ORTHO05D001214 2.6e-07 59.3 92 34.8
SMO239G0080 Selaginella moellendorffii HOM05D000169 ORTHO05D008642 2.6e-07 59.3 55 49.1
HanXRQChr13g0404791 Helianthus annuus HOM05D000169 ORTHO05D000542 3.4e-07 58.9 55 50.9
Peaxi162Scf00166g00529 Petunia axillaris HOM05D000169 ORTHO05D008642 3.4e-07 58.9 55 52.7
MELO3C023494.2 Cucumis melo HOM05D000169 ORTHO05D001214 4.5e-07 58.5 97 38.1
DCAR_002953 Daucus carota HOM05D000169 ORTHO05D000542 4.5e-07 58.5 55 47.3
Duzib251G0624 Durio zibethinus HOM05D000169 ORTHO05D008642 4.5e-07 58.5 55 49.1
FvH4_4g23640 Fragaria vesca HOM05D000169 ORTHO05D008642 4.5e-07 58.5 96 38.5
FAN12G3813 Fragaria x ananassa HOM05D000169 ORTHO05D008642 4.5e-07 58.5 96 38.5
MSTRG.25706 Avicennia marina HOM05D000169 ORTHO05D000542 5.8e-07 58.2 75 42.7
MSTRG.3352 Avicennia marina HOM05D000169 ORTHO05D008642 5.8e-07 58.2 51 49.0
ClCG00G005300 Citrullus lanatus HOM05D000169 ORTHO05D001214 5.8e-07 58.2 97 38.1
FAN17G0351 Fragaria x ananassa HOM05D000169 ORTHO05D008642 5.8e-07 58.2 96 38.5
Gohir.A03G125500 Gossypium hirsutum HOM05D000169 ORTHO05D008642 7.6e-07 57.8 55 47.3
Gorai.005G166400 Gossypium raimondii HOM05D000169 ORTHO05D008642 7.6e-07 57.8 55 47.3
Sed0004188 Sechium edule HOM05D000169 ORTHO05D001214 7.6e-07 57.8 95 36.8
Cfa017799 Carpinus fangiana HOM05D000169 ORTHO05D008642 1.0e-06 57.4 55 49.1
Haze_12429 Corylus avellana HOM05D000169 ORTHO05D008642 1.0e-06 57.4 55 49.1
CsaV3_7G031620 Cucumis sativus L. HOM05D000169 ORTHO05D001214 1.0e-06 57.4 97 38.1
Eucgr.B03502 Eucalyptus grandis HOM05D000169 ORTHO05D008642 1.0e-06 57.4 55 49.1
Thecc.02G206400 Theobroma cacao HOM05D000169 ORTHO05D008642 1.0e-06 57.4 55 47.3
MD14G1050700 Malus domestica HOM05D000169 ORTHO05D000542 1.3e-06 57.0 55 50.9
Zm00001eb119050 Zea mays HOM05D000169 ORTHO05D008642 1.3e-06 57.0 53 47.2
Aqoxy5G00127 Aquilegia oxysepala HOM05D000169 ORTHO05D000542 1.7e-06 56.6 79 40.5
CsaV3_7G031610 Cucumis sativus L. HOM05D000169 ORTHO05D001214 1.7e-06 56.6 55 49.1
Gohir.D02G148300 Gossypium hirsutum HOM05D000169 ORTHO05D008642 1.7e-06 56.6 55 45.5
Sed0021867 Sechium edule HOM05D000169 ORTHO05D001214 1.7e-06 56.6 97 35.1
MSTRG.6208 Avicennia marina HOM05D000169 ORTHO05D000265 2.2e-06 56.2 97 36.1
MELO3C028965.2 Cucumis melo HOM05D000169 ORTHO05D001214 2.2e-06 56.2 95 36.8
Nn3g19804 Nelumbo nucifera HOM05D000169 ORTHO05D000542 2.2e-06 56.2 79 40.5
Os10g0578950 Oryza sativa ssp. japonica HOM05D000169 ORTHO05D000542 2.2e-06 56.2 56 55.4
QL03p052462 Quercus lobata HOM05D000169 ORTHO05D008642 2.2e-06 56.2 92 37.0
PGR102G0113 Punica granatum HOM05D000169 ORTHO05D008642 2.9e-06 55.8 55 49.1
Sed0023294 Sechium edule HOM05D000169 ORTHO05D001214 2.9e-06 55.8 92 34.8
SEGI_30284 Sequoiadendron giganteum HOM05D000169 ORTHO05D000542 2.9e-06 55.8 75 40.0
MSTRG.9567 Avicennia marina HOM05D000169 ORTHO05D001214 3.8e-06 55.5 96 34.4
BcaB06g26210 Brassica carinata HOM05D000169 ORTHO05D001214 3.8e-06 55.5 97 36.1
Cpa.g.sc43.68 Carica papaya HOM05D000169 ORTHO05D008642 3.8e-06 55.5 55 45.5
Cc08_g03990 Coffea canephora HOM05D000169 ORTHO05D000542 3.8e-06 55.5 55 50.9
HanXRQChr12g0361231 Helianthus annuus HOM05D000169 ORTHO05D008642 3.8e-06 55.5 55 47.3
Mapoly0014s0059 Marchantia polymorpha HOM05D000169 ORTHO05D008642 3.8e-06 55.5 55 45.5
Psat5g167480 Pisum sativum HOM05D000169 ORTHO05D008642 3.8e-06 55.5 96 38.5
SEGI_30445 Sequoiadendron giganteum HOM05D000169 ORTHO05D001214 3.8e-06 55.5 79 39.2
Sopen06g025930 Solanum pennellii HOM05D000169 ORTHO05D001214 3.8e-06 55.5 95 32.6
TWI75G1367 Tripterygium wilfordii HOM05D000169 ORTHO05D008642 3.8e-06 55.5 54 48.1
CAN.G1089.5 Capsicum annuum HOM05D000169 ORTHO05D001214 4.9e-06 55.1 95 32.6
CsaV3_7G031600 Cucumis sativus L. HOM05D000169 ORTHO05D001214 4.9e-06 55.1 100 36.0
Lalb_Chr15g0082071 Lupinus albus HOM05D000169 ORTHO05D000542 4.9e-06 55.1 81 40.7
VMungo1215G1156 Vigna mungo HOM05D000169 ORTHO05D001214 4.9e-06 55.1 92 34.8
CANSAT21G0066 Cannabis sativa HOM05D000169 ORTHO05D000542 6.5e-06 54.7 55 49.1
CAN.G1008.26 Capsicum annuum HOM05D000169 ORTHO05D001214 6.5e-06 54.7 95 33.7
CsaV3_5G030200 Cucumis sativus L. HOM05D000169 ORTHO05D008642 6.5e-06 54.7 55 47.3
ECA233G5612 Erigeron canadensis HOM05D000169 ORTHO05D008642 6.5e-06 54.7 55 45.5
ECA240G2014 Erigeron canadensis HOM05D000169 ORTHO05D000542 6.5e-06 54.7 55 47.3
Migut.A00583 Erythranthe guttata HOM05D000169 ORTHO05D000542 6.5e-06 54.7 55 49.1
Lsat_1_v5_gn_6_73421 Lactuca sativa HOM05D000169 ORTHO05D000542 6.5e-06 54.7 55 49.1
Oeu042147.1 Olea europaea HOM05D000169 ORTHO05D001214 6.5e-06 54.7 97 36.1
Peaxi162Scf00314g00086 Petunia axillaris HOM05D000169 ORTHO05D001214 6.5e-06 54.7 96 35.4
PGSC0003DMG400028929 Solanum tuberosum HOM05D000169 ORTHO05D001214 6.5e-06 54.7 95 32.6
TPR.G5424 Trifolium pratense HOM05D000169 ORTHO05D001214 6.5e-06 54.7 92 37.0
vmacro19091 Vaccinium macrocarpon HOM05D000169 ORTHO05D001214 6.5e-06 54.7 92 34.8
ClCG09G003580 Citrullus lanatus HOM05D000169 ORTHO05D000265 8.4e-06 54.3 92 35.9
Lsat_1_v5_gn_8_148221 Lactuca sativa HOM05D000169 ORTHO05D008642 8.4e-06 54.3 55 45.5
Potri.001G036900 Populus trichocarpa HOM05D000169 ORTHO05D001214 8.4e-06 54.3 55 40.0
SalBow2G1067 Salvia bowleyana HOM05D000169 ORTHO05D003054 8.4e-06 54.3 55 47.3
Sed0008824 Sechium edule HOM05D000169 ORTHO05D001214 8.4e-06 54.3 55 45.5


User provided reference genes

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