Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 9.7e-162 574.3 538 100.0
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 1.6e-111 407.5 332 81.9
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 4.4e-106 389.4 333 78.7
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 8.3e-105 385.2 332 77.4
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 2.7e-103 380.2 327 78.6
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 9.5e-101 371.7 333 73.9
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 8.1e-100 368.6 321 76.9
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 3.1e-99 366.7 314 78.0
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 5.2e-99 365.9 335 74.9
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 6.8e-99 365.5 302 79.5
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 1.5e-98 364.4 317 76.0
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 2.0e-98 364.0 302 80.8
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 2.6e-98 363.6 299 81.6
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 3.4e-98 363.2 302 79.1
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 3.4e-98 363.2 302 79.1
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 3.4e-98 363.2 302 79.8
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 7.5e-98 362.1 331 75.5
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 7.5e-98 362.1 302 80.5
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 7.5e-98 362.1 333 73.9
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 9.8e-98 361.7 324 76.2
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 9.8e-98 361.7 324 76.2
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.3e-97 361.3 302 79.1
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.7e-97 360.9 300 80.0
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 2.2e-97 360.5 321 76.3
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 4.9e-97 359.4 302 78.8
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 6.4e-97 359.0 323 75.2
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 1.4e-96 357.8 323 75.2
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 1.4e-96 357.8 326 74.8
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 1.4e-96 357.8 302 77.5
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 9.2e-96 355.1 332 74.7
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 1.6e-95 354.4 302 78.1
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 2.7e-95 353.6 302 79.1
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 2.3e-94 350.5 302 78.8
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 2.3e-94 350.5 328 74.4
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 2.3e-94 350.5 320 74.1
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 3.0e-94 350.1 305 77.0
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 8.6e-94 348.6 302 77.2
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 1.1e-93 348.2 303 76.6
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 1.5e-93 347.8 331 74.0
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 1.9e-93 347.4 299 76.9
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 2.5e-93 347.1 296 77.4
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 3.3e-93 346.7 302 77.5
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 4.3e-93 346.3 327 72.8
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 5.6e-93 345.9 303 77.6
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 5.6e-93 345.9 299 76.6
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 1.2e-92 344.7 301 78.4
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 1.6e-92 344.4 325 74.2
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 1.6e-92 344.4 325 72.9
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 2.1e-92 344.0 303 77.2
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 2.8e-92 343.6 303 77.2
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 3.6e-92 343.2 325 74.2
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 4.7e-92 342.8 296 78.4
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 8.1e-92 342.0 325 73.8
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 8.1e-92 342.0 327 67.0
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 1.1e-91 341.7 327 72.5
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 1.1e-91 341.7 303 76.9
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.1e-91 341.7 315 74.9
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 2.3e-91 340.5 326 66.3
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 6.8e-91 339.0 303 77.6
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.2e-90 338.2 299 75.6
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 1.5e-90 337.8 300 76.7
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 2.0e-90 337.4 301 76.1
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 2.6e-90 337.0 299 75.3
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 3.4e-90 336.7 322 72.0
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 5.8e-90 335.9 301 59.5
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 5.8e-90 335.9 299 74.6
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 7.6e-90 335.5 299 76.3
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 9.9e-90 335.1 303 75.6
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 1.7e-89 334.3 299 75.6
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 4.9e-89 332.8 304 76.3
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 8.4e-89 332.0 337 56.1
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 1.1e-88 331.6 299 74.9
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 5.4e-88 329.3 303 74.3
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 7.1e-88 328.9 342 69.0
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 3.9e-86 323.2 327 71.3
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 5.1e-86 322.8 312 72.8
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 5.1e-86 322.8 327 54.4
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 2.5e-85 320.5 301 72.4
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 4.3e-85 319.7 302 72.2
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 1.6e-84 317.8 312 71.5
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 4.0e-83 313.2 299 72.9
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.2e-79 301.6 299 71.2
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 2.7e-79 300.4 303 71.6
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 3.5e-79 300.1 303 71.3
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 4.6e-79 299.7 321 69.2
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 4.6e-79 299.7 325 69.2
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.0e-78 298.5 299 70.9
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 3.0e-78 297.0 302 70.2
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 5.1e-78 296.2 299 70.6
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 7.3e-77 292.4 294 72.1
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 2.1e-76 290.8 321 67.9
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 1.4e-75 288.1 302 70.2
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 6.0e-71 272.7 296 68.6
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 4.3e-69 266.5 292 65.8
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.3e-68 265.0 293 68.3
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 1.8e-67 261.2 284 69.4
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 6.0e-63 246.1 302 47.7
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 4.8e-60 236.5 211 83.4
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 7.1e-56 222.6 147 76.2
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.0e-54 218.8 137 79.6
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 2.0e-50 204.5 146 69.2
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 2.6e-50 204.1 196 81.6
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 2.5e-48 197.6 174 60.9
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 6.1e-39 166.4 103 79.6
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 7.9e-39 166.0 103 77.7
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 2.0e-34 151.4 263 51.0
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 6.3e-28 129.8 307 44.6
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.8e-27 128.3 87 67.8
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 2.0e-26 124.8 267 44.2
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 1.7e-25 121.7 297 32.7
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 8.5e-25 119.4 83 72.3
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 2.2e-20 104.8 78 69.2
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 4.8e-20 103.6 74 68.9
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 2.0e-18 98.2 93 57.0
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 2.2e-12 78.2 77 55.8
MD02G1151200 Malus domestica HOM05D000891 ORTHO05D000761 7.2e-08 63.2 107 33.6
MD15G1265700 Malus domestica HOM05D000891 ORTHO05D000761 1.2e-07 62.4 107 32.7
DCAR_025928 Daucus carota HOM05D000891 ORTHO05D000761 1.6e-07 62.0 97 39.2
Gohir.D12G065400 Gossypium hirsutum HOM05D000891 ORTHO05D000761 1.6e-07 62.0 108 36.1
Gorai.008G068700 Gossypium raimondii HOM05D000891 ORTHO05D000761 1.6e-07 62.0 108 36.1
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 2.7e-07 61.2 107 33.6
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 2.7e-07 61.2 96 37.5
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 4.7e-07 60.5 107 37.4
Duzib147G0693 Durio zibethinus HOM05D000891 ORTHO05D000761 4.7e-07 60.5 108 36.1
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 4.7e-07 60.5 31 96.8
QL06p045511 Quercus lobata HOM05D000891 ORTHO05D000761 4.7e-07 60.5 107 32.7
Sed0016696 Sechium edule HOM05D000891 ORTHO05D000761 4.7e-07 60.5 107 32.7
Aa31LG6G13480 Aethionema arabicum HOM05D000891 ORTHO05D000761 6.1e-07 60.1 108 31.5
CANSAT01G1424 Cannabis sativa HOM05D000891 ORTHO05D000761 6.1e-07 60.1 86 34.9
MELO3C017551.2 Cucumis melo HOM05D000891 ORTHO05D000761 6.1e-07 60.1 107 32.7
Thecc.01G038900 Theobroma cacao HOM05D000891 ORTHO05D000761 6.1e-07 60.1 108 34.3
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 8.0e-07 59.7 107 35.5
Duzib264G1293 Durio zibethinus HOM05D000891 ORTHO05D000761 8.0e-07 59.7 108 34.3
Solyc02g062910.3 Solanum lycopersicum HOM05D000891 ORTHO05D000761 1.0e-06 59.3 107 36.4
Sopen02g013930 Solanum pennellii HOM05D000891 ORTHO05D000761 1.0e-06 59.3 107 36.4
PGSC0003DMG400015467 Solanum tuberosum HOM05D000891 ORTHO05D000761 1.4e-06 58.9 107 36.4
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 1.8e-06 58.5 103 37.9
Prupe.7G151800 Prunus persica HOM05D000891 ORTHO05D000761 1.8e-06 58.5 107 31.8
FvH4_1g13650 Fragaria vesca HOM05D000891 ORTHO05D000761 3.0e-06 57.8 86 33.7
FAN19G1656 Fragaria x ananassa HOM05D000891 ORTHO05D000761 3.0e-06 57.8 86 33.7
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 3.0e-06 57.8 31 93.5
THA.LOC104819795 Tarenaya hassleriana HOM05D000891 ORTHO05D000761 3.0e-06 57.8 100 31.0
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 4.0e-06 57.4 113 26.5
AUR62007998 Chenopodium quinoa HOM05D000891 ORTHO05D000761 5.2e-06 57.0 86 37.2
Sp7g34340 Schrenkiella parvula HOM05D000891 ORTHO05D000761 5.2e-06 57.0 108 30.6
Potri.007G028400 Populus trichocarpa HOM05D000891 ORTHO05D000761 6.8e-06 56.6 107 32.7
Gohir.A12G065300 Gossypium hirsutum HOM05D000891 ORTHO05D000761 8.8e-06 56.2 76 39.5
Peaxi162Scf00008g03911 Petunia axillaris HOM05D000891 ORTHO05D000761 8.8e-06 56.2 107 35.5


User provided reference genes

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