Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0014 Ceratophyllum demersum HOM05D007672 ORTHO05D009617 6.7e-102 374.0 188 100.0
Hma1.2p1_0940F.1_g239540 Hydrangea macrophylla HOM05D007672 ORTHO05D009617 2.1e-18 96.7 133 41.4
THA.LOC104823640 Tarenaya hassleriana HOM05D007672 ORTHO05D009617 6.0e-18 95.1 128 44.5
Aqoxy3G04074 Aquilegia oxysepala HOM05D007672 ORTHO05D009617 3.0e-17 92.8 130 43.1
Ciclev10017185m.g Citrus clementina HOM05D007672 ORTHO05D009617 3.0e-17 92.8 123 43.1
Dinv32113 Davidia involucrata HOM05D007672 ORTHO05D009617 2.5e-16 89.7 110 46.4
Actinidia36615 Actinidia chinensis HOM05D007672 ORTHO05D009617 3.3e-16 89.4 117 43.6
Prupe.5G236700 Prunus persica HOM05D007672 ORTHO05D009617 5.6e-16 88.6 126 41.3
Medtr6g071190 Medicago truncatula HOM05D007672 ORTHO05D009617 1.3e-15 87.4 115 40.9
VMungo1215G2599 Vigna mungo HOM05D007672 ORTHO05D009617 1.6e-15 87.0 112 49.1
Aa31LG1G330 Aethionema arabicum HOM05D007672 ORTHO05D009617 2.8e-15 86.3 99 39.4
Psat1g029600 Pisum sativum HOM05D007672 ORTHO05D009617 2.8e-15 86.3 129 39.5
Lj2g0010633 Lotus japonicus HOM05D007672 ORTHO05D009617 3.6e-15 85.9 134 41.8
FvH4_5g17670 Fragaria vesca HOM05D007672 ORTHO05D009617 4.8e-15 85.5 130 38.5
FAN18G0484 Fragaria x ananassa HOM05D007672 ORTHO05D009617 4.8e-15 85.5 130 38.5
Potri.012G043400 Populus trichocarpa HOM05D007672 ORTHO05D009617 6.2e-15 85.1 130 40.0
Glyma.09G172851 Glycine max HOM05D007672 ORTHO05D009617 8.1e-15 84.7 123 40.7
Lalb_Chr14g0370701 Lupinus albus HOM05D007672 ORTHO05D009617 8.1e-15 84.7 141 39.0
Glyma.07G172500 Glycine max HOM05D007672 ORTHO05D009617 1.1e-14 84.3 125 42.4
Lalb_Chr22g0353431 Lupinus albus HOM05D007672 ORTHO05D009617 1.1e-14 84.3 99 47.5
Manes.06G003100 Manihot esculenta HOM05D007672 ORTHO05D009617 1.1e-14 84.3 99 45.5
arahy.Tifrunner.gnm1.ann1.S28ZE3 Arachis hypogaea HOM05D007672 ORTHO05D009617 1.4e-14 84.0 120 42.5
Duzib068G1319 Durio zibethinus HOM05D007672 ORTHO05D009617 1.4e-14 84.0 142 37.3
Cpa.g.sc3.361 Carica papaya HOM05D000154 ORTHO05D000092 1.8e-14 83.6 143 37.1
CiPaw.15G147200 Carya illinoinensis HOM05D007672 ORTHO05D009617 1.8e-14 83.6 123 41.5
Glyma.07G104800 Glycine max HOM05D007672 ORTHO05D009617 1.8e-14 83.6 124 41.1
Phvul.004G148100 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 1.8e-14 83.6 111 43.2
FAN08G2449 Fragaria x ananassa HOM05D007672 ORTHO05D009617 2.4e-14 83.2 104 43.3
MD14G1239200 Malus domestica HOM05D007672 ORTHO05D009617 2.4e-14 83.2 101 45.5
arahy.Tifrunner.gnm1.ann1.00W5AZ Arachis hypogaea HOM05D007672 ORTHO05D009617 4.0e-14 82.4 120 41.7
Haze_18912 Corylus avellana HOM05D007672 ORTHO05D009617 5.3e-14 82.0 147 34.7
FAN07G2452 Fragaria x ananassa HOM05D007672 ORTHO05D009617 5.3e-14 82.0 172 33.7
Glyma.02G086400 Glycine max HOM05D007672 ORTHO05D009617 5.3e-14 82.0 107 43.9
Medtr1g032750 Medicago truncatula HOM05D007672 ORTHO05D009617 5.3e-14 82.0 120 40.0
RcHm_v2.0_Chr7g0177981 Rosa chinensis HOM05D007672 ORTHO05D009617 5.3e-14 82.0 126 38.9
FvH4_4g33370 Fragaria vesca HOM05D007672 ORTHO05D009617 6.9e-14 81.6 140 36.4
FAN12G4179 Fragaria x ananassa HOM05D007672 ORTHO05D009617 6.9e-14 81.6 140 36.4
Prupe.1G335000 Prunus persica HOM05D007672 ORTHO05D009617 6.9e-14 81.6 107 43.0
QL03p037604 Quercus lobata HOM05D007672 ORTHO05D009617 9.0e-14 81.3 106 43.4
TPR.G36851 Trifolium pratense HOM05D007672 ORTHO05D009617 9.0e-14 81.3 136 38.2
FAN04G1237 Fragaria x ananassa HOM05D007672 ORTHO05D009617 1.2e-13 80.9 104 42.3
Phvul.003G016200 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 1.2e-13 80.9 110 40.9
Lj2g0012031 Lotus japonicus HOM05D007672 ORTHO05D009617 2.0e-13 80.1 122 40.2
Manes.14G157000 Manihot esculenta HOM05D007672 ORTHO05D009617 2.0e-13 80.1 124 37.1
THA.LOC104805091 Tarenaya hassleriana HOM05D007672 ORTHO05D009617 2.0e-13 80.1 124 42.7
Carub.0001s1456 Capsella rubella HOM05D007672 ORTHO05D009617 2.6e-13 79.7 111 38.7
Dinv06126 Davidia involucrata HOM05D008473 ORTHO05D009617 3.4e-13 79.3 87 46.0
RcHm_v2.0_Chr4g0442631 Rosa chinensis HOM05D007672 ORTHO05D009617 4.5e-13 79.0 123 36.6
AL1G26790 Arabidopsis lyrata HOM05D007672 ORTHO05D009617 5.8e-13 78.6 131 37.4
Thecc.03G062100 Theobroma cacao HOM05D007672 ORTHO05D009617 5.8e-13 78.6 146 34.2
Oeu023512.1 Olea europaea HOM05D007672 ORTHO05D009617 7.6e-13 78.2 112 36.6
MD06G1232400 Malus domestica HOM05D007672 ORTHO05D009617 1.3e-12 77.4 119 39.5
Nitab4.5_0000033g0200 Nicotiana tabacum HOM05D007672 ORTHO05D009617 1.3e-12 77.4 149 36.2
CANSAT78G0487 Cannabis sativa HOM05D007672 ORTHO05D009617 1.7e-12 77.0 92 44.6
Manes.15G136200 Manihot esculenta HOM05D007672 ORTHO05D009617 1.7e-12 77.0 125 36.0
Peaxi162Scf01064g00027 Petunia axillaris HOM05D007672 ORTHO05D009617 2.9e-12 76.3 146 35.6
VMungo0464G2034 Vigna mungo HOM05D000162 ORTHO05D009617 2.9e-12 76.3 105 41.0
Nitab4.5_0004855g0020 Nicotiana tabacum HOM05D007672 ORTHO05D009617 3.8e-12 75.9 147 33.3
BcaC05g25394 Brassica carinata HOM05D007672 ORTHO05D009617 6.4e-12 75.1 123 39.0
BolC5t30015H Brassica oleracea HOM05D007672 ORTHO05D009617 6.4e-12 75.1 123 39.0
BraA06t24260Z Brassica rapa HOM05D007672 ORTHO05D009617 6.4e-12 75.1 98 42.9
CARHR015300 Cardamine hirsuta HOM05D007672 ORTHO05D009617 6.4e-12 75.1 124 36.3
C05p12710 Brassica napus HOM05D007672 ORTHO05D009617 1.4e-11 73.9 123 39.0
Thhalv10009881m.g Eutrema salsugineum HOM05D007672 ORTHO05D009617 1.9e-11 73.6 113 34.5
SGA_v2.0_scaffold74G24688 Striga asiatica HOM05D007672 ORTHO05D009617 1.9e-11 73.6 116 37.9
A06p10820 Brassica napus HOM05D007672 ORTHO05D009617 3.2e-11 72.8 98 39.8
CAN.G65.98 Capsicum annuum HOM05D007672 ORTHO05D009617 3.2e-11 72.8 158 31.6
FAN17G1984 Fragaria x ananassa HOM05D007672 ORTHO05D009617 3.2e-11 72.8 96 42.7
Sp1g13200 Schrenkiella parvula HOM05D007672 ORTHO05D009617 3.2e-11 72.8 119 37.0
Migut.D01220 Erythranthe guttata HOM05D007672 ORTHO05D009617 4.2e-11 72.4 109 34.9
TWI15G1176 Tripterygium wilfordii HOM05D007672 ORTHO05D009617 5.4e-11 72.0 147 36.1
DCAR_023572 Daucus carota HOM05D007672 ORTHO05D009617 7.1e-11 71.6 122 37.7
SalBow1G8131 Salvia bowleyana HOM05D007672 ORTHO05D009617 1.2e-10 70.9 114 34.2
Gorai.008G291600 Gossypium raimondii HOM05D007672 ORTHO05D009617 1.6e-10 70.5 101 38.6
Gohir.A12G270800 Gossypium hirsutum HOM05D007672 ORTHO05D009617 2.7e-10 69.7 101 38.6
Gohir.D12G271200 Gossypium hirsutum HOM05D007672 ORTHO05D009617 1.0e-09 67.8 101 36.6
PGR044G0098 Punica granatum HOM05D007672 ORTHO05D009617 1.0e-09 67.8 105 37.1
Solyc06g072480.1 Solanum lycopersicum HOM05D007672 ORTHO05D009617 1.3e-09 67.4 139 34.5
Medtr1g084060 Medicago truncatula HOM05D000779 ORTHO05D000246 5.1e-09 65.5 134 28.4
Psat6g051280 Pisum sativum HOM05D007672 ORTHO05D009617 8.7e-09 64.7 100 40.0
Sabra12G0030500 Salix brachista HOM05D000154 ORTHO05D009617 8.7e-09 64.7 182 30.8
TPR.G2622 Trifolium pratense HOM05D000779 ORTHO05D000246 8.7e-09 64.7 99 33.3
CAN.G1076.7 Capsicum annuum HOM05D000779 ORTHO05D000246 1.1e-08 64.3 114 33.3
SalBow7G4052 Salvia bowleyana HOM05D000779 ORTHO05D000246 1.1e-08 64.3 114 29.8
Ca_10173_v3 Cicer arietinum L. HOM05D000779 ORTHO05D000246 1.5e-08 63.9 98 32.7
SEGI_07794 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 2.5e-08 63.2 130 30.8
SGA_v2.0_scaffold53G19283 Striga asiatica HOM05D000779 ORTHO05D000246 2.5e-08 63.2 117 32.5
Gohir.D08G222600 Gossypium hirsutum HOM05D000779 ORTHO05D000246 4.3e-08 62.4 115 29.6
TWI56G1098 Tripterygium wilfordii HOM05D000779 ORTHO05D000246 4.3e-08 62.4 138 30.4
Lj3A1055T47 Lonicera japonica HOM05D000779 ORTHO05D000246 5.6e-08 62.0 128 30.5
PGSC0003DMG400002769 Solanum tuberosum HOM05D000779 ORTHO05D000246 5.6e-08 62.0 99 33.3
Actinidia01680 Actinidia chinensis HOM05D000779 ORTHO05D000246 7.4e-08 61.6 123 29.3
GSVIVG01013790001 Vitis vinifera HOM05D000779 ORTHO05D000246 7.4e-08 61.6 127 27.6
SEGI_06213 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 9.6e-08 61.2 133 28.6
Thecc.03G015400 Theobroma cacao HOM05D000779 ORTHO05D000246 9.6e-08 61.2 117 28.2
Gohir.A08G205600 Gossypium hirsutum HOM05D000779 ORTHO05D000246 1.3e-07 60.8 114 29.8
Hma1.2p1_0046F.1_g026670 Hydrangea macrophylla HOM05D000779 ORTHO05D000246 1.3e-07 60.8 117 29.9
Oeu016566.1 Olea europaea HOM05D000779 ORTHO05D000246 1.3e-07 60.8 144 29.9
Rhsim05G0126900 Rhododendron simsii HOM05D000779 ORTHO05D000246 1.3e-07 60.8 105 32.4
MELO3C004181.2 Cucumis melo HOM05D000779 ORTHO05D000246 1.6e-07 60.5 96 30.2
CsaV3_2G007120 Cucumis sativus L. HOM05D000779 ORTHO05D000246 1.6e-07 60.5 96 30.2
Glyma.20G097500 Glycine max HOM05D000779 ORTHO05D000246 1.6e-07 60.5 149 29.5
SEGI_36691 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 1.6e-07 60.5 104 33.7
Nitab4.5_0000368g0070 Nicotiana tabacum HOM05D000779 ORTHO05D000246 2.1e-07 60.1 102 32.4
Sabra10G0024300 Salix brachista HOM05D000779 ORTHO05D000246 2.1e-07 60.1 108 29.6
Sed0005309 Sechium edule HOM05D000779 ORTHO05D000246 2.1e-07 60.1 96 31.2
Phvul.007G201400 Phaseolus vulgaris HOM05D000779 ORTHO05D000246 2.8e-07 59.7 110 31.8
AT1G70510 Arabidopsis thaliana HOM05D000779 ORTHO05D000246 3.7e-07 59.3 124 31.5
CSS0019602 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 3.7e-07 59.3 110 30.0
ClCG02G014890 Citrullus lanatus HOM05D000779 ORTHO05D000246 3.7e-07 59.3 96 30.2
Nn4g24448 Nelumbo nucifera HOM05D007672 ORTHO05D009617 3.7e-07 59.3 82 41.5
Nitab4.5_0005883g0010 Nicotiana tabacum HOM05D000779 ORTHO05D000246 3.7e-07 59.3 102 32.4
Sed0023815 Sechium edule HOM05D000779 ORTHO05D000246 3.7e-07 59.3 146 29.5
VMungo0603G0001 Vigna mungo HOM05D000779 ORTHO05D000246 3.7e-07 59.3 104 32.7
Duzib268G1392 Durio zibethinus HOM05D000779 ORTHO05D000246 4.8e-07 58.9 108 28.7
Nn4g25593 Nelumbo nucifera HOM05D000779 ORTHO05D000246 4.8e-07 58.9 116 27.6
QL03p059030 Quercus lobata HOM05D000779 ORTHO05D000246 4.8e-07 58.9 114 27.2
Cc04_g12230 Coffea canephora HOM05D000779 ORTHO05D000246 6.2e-07 58.5 141 28.4
Peaxi162Scf00673g00046 Petunia axillaris HOM05D000779 ORTHO05D000246 6.2e-07 58.5 143 28.0
Psat0s1183g0080 Pisum sativum HOM05D000779 ORTHO05D000246 6.2e-07 58.5 99 29.3
Solyc01g100510.4 Solanum lycopersicum HOM05D000779 ORTHO05D000246 6.2e-07 58.5 99 32.3
Thecc.02G255200 Theobroma cacao HOM05D000779 ORTHO05D000246 6.2e-07 58.5 148 25.7
Cpa.g.sc48.162 Carica papaya HOM05D000779 ORTHO05D000246 1.1e-06 57.8 128 27.3
FAN05G3674 Fragaria x ananassa HOM05D000779 ORTHO05D000246 1.1e-06 57.8 97 29.9
FAN09G3880 Fragaria x ananassa HOM05D000779 ORTHO05D000246 1.1e-06 57.8 97 29.9
Glyma.10G147000 Glycine max HOM05D000779 ORTHO05D000246 1.4e-06 57.4 165 27.3
PSO210G7828 Papaver somniferum HOM05D000779 ORTHO05D000246 1.4e-06 57.4 111 27.9
Atru.chr9.2512 Acer truncatum HOM05D000779 ORTHO05D000246 1.8e-06 57.0 115 31.3
AL2G29900 Arabidopsis lyrata HOM05D000779 ORTHO05D000246 1.8e-06 57.0 140 27.9
Cfa006705 Carpinus fangiana HOM05D000779 ORTHO05D000246 1.8e-06 57.0 101 30.7
COL.COLO4_30088 Corchorus olitorius HOM05D000779 ORTHO05D000246 1.8e-06 57.0 108 28.7
MELO3C010678.2 Cucumis melo HOM05D000779 ORTHO05D000246 1.8e-06 57.0 182 25.3
Gohir.A11G273500 Gossypium hirsutum HOM05D000779 ORTHO05D000246 1.8e-06 57.0 96 31.2
PSO761G0318 Papaver somniferum HOM05D000779 ORTHO05D000246 1.8e-06 57.0 111 27.0
RcHm_v2.0_Chr3g0457121 Rosa chinensis HOM05D000779 ORTHO05D000246 1.8e-06 57.0 103 27.2
TAR374G1201 Trochodendron aralioides HOM05D000779 ORTHO05D000246 1.8e-06 57.0 106 29.2
unitig_8.g3938 Utricularia gibba HOM05D000779 ORTHO05D000246 1.8e-06 57.0 103 29.1
Ciclev10033752m.g Citrus clementina HOM05D000779 ORTHO05D000246 2.4e-06 56.6 112 29.5
Phvul.001G224900 Phaseolus vulgaris HOM05D000779 ORTHO05D000246 2.4e-06 56.6 124 29.8
Sed0005255 Sechium edule HOM05D000779 ORTHO05D000246 2.4e-06 56.6 96 29.2
Haze_04060 Corylus avellana HOM05D000779 ORTHO05D000246 3.1e-06 56.2 101 30.7
FAN02G0329 Fragaria x ananassa HOM05D000779 ORTHO05D000246 3.1e-06 56.2 97 27.8
Sopen01g044020 Solanum pennellii HOM05D000779 ORTHO05D000246 3.1e-06 56.2 99 30.3
FvH4_6g07460 Fragaria vesca HOM05D000779 ORTHO05D000246 4.0e-06 55.8 97 28.9
FAN14G2215 Fragaria x ananassa HOM05D000779 ORTHO05D000246 4.0e-06 55.8 97 28.9
Glyma.02G036900 Glycine max HOM05D000779 ORTHO05D000246 4.0e-06 55.8 118 28.8
Gohir.A12G275600 Gossypium hirsutum HOM05D000779 ORTHO05D000246 4.0e-06 55.8 105 29.5
Lj5g0001279 Lotus japonicus HOM05D000779 ORTHO05D000246 4.0e-06 55.8 127 26.8
Lalb_Chr05g0216661 Lupinus albus HOM05D000779 ORTHO05D000246 4.0e-06 55.8 134 26.1
Sabra05G0022900 Salix brachista HOM05D000779 ORTHO05D000246 4.0e-06 55.8 134 29.9
Sc11g0001050 Simmondsia chinensis HOM05D000779 ORTHO05D000246 4.0e-06 55.8 112 25.9
BolC8t52097H Brassica oleracea HOM05D007672 ORTHO05D009617 5.3e-06 55.5 119 32.8
ClCG05G025510 Citrullus lanatus HOM05D000779 ORTHO05D000246 5.3e-06 55.5 119 26.9
Gohir.A13G112100 Gossypium hirsutum HOM05D000779 ORTHO05D000246 5.3e-06 55.5 96 29.2
Gohir.D12G276300 Gossypium hirsutum HOM05D000779 ORTHO05D000246 5.3e-06 55.5 105 28.6
Gohir.D13G115100 Gossypium hirsutum HOM05D000779 ORTHO05D000246 5.3e-06 55.5 96 29.2
Gorai.013G129400 Gossypium raimondii HOM05D000779 ORTHO05D000246 5.3e-06 55.5 96 29.2
VMungo1383G0325 Vigna mungo HOM05D000779 ORTHO05D000246 5.3e-06 55.5 117 29.1
GSVIVG01031241001 Vitis vinifera HOM05D000779 ORTHO05D000246 5.3e-06 55.5 127 26.8
Aqoxy2G02762 Aquilegia oxysepala HOM05D000779 ORTHO05D000246 6.9e-06 55.1 114 25.4
BcaC07g41540 Brassica carinata HOM05D007672 ORTHO05D009617 6.9e-06 55.1 119 32.8
C08p45430 Brassica napus HOM05D007672 ORTHO05D009617 6.9e-06 55.1 119 32.8
CARHR063720 Cardamine hirsuta HOM05D000779 ORTHO05D000246 6.9e-06 55.1 128 25.8
CiPaw.07G029800 Carya illinoinensis HOM05D000779 ORTHO05D000246 6.9e-06 55.1 140 27.1
Cc02_g35050 Coffea canephora HOM05D000779 ORTHO05D000246 6.9e-06 55.1 102 30.4
Glyma.03G231100 Glycine max HOM05D000779 ORTHO05D000246 6.9e-06 55.1 99 28.3
Glyma.19G228300 Glycine max HOM05D000779 ORTHO05D000246 6.9e-06 55.1 140 24.3
Manes.08G111000 Manihot esculenta HOM05D000779 ORTHO05D000246 6.9e-06 55.1 149 27.5
Nitab4.5_0003229g0130 Nicotiana tabacum HOM05D000779 ORTHO05D000246 6.9e-06 55.1 129 27.1
Peaxi162Scf00089g01735 Petunia axillaris HOM05D000779 ORTHO05D000246 6.9e-06 55.1 140 24.3
Atru.chr2.198 Acer truncatum HOM05D000779 ORTHO05D000246 9.0e-06 54.7 107 31.8
Dinv24446 Davidia involucrata HOM05D000779 ORTHO05D000246 9.0e-06 54.7 114 28.1
Potri.013G008600 Populus trichocarpa HOM05D000779 ORTHO05D000246 9.0e-06 54.7 118 30.5
SEGI_10526 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 9.0e-06 54.7 153 26.8


User provided reference genes

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