Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 1.7e-311 1072.0 613 100.0
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 2.9e-114 416.8 518 49.2
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.2e-109 400.6 511 47.7
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 3.5e-107 393.3 515 54.2
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-105 387.9 558 53.8
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 3.3e-105 386.7 481 57.8
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 6.1e-104 382.5 393 57.5
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.3e-103 380.6 372 58.6
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 7.5e-102 375.6 381 56.7
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 1.9e-97 360.9 529 57.8
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 4.7e-96 356.3 389 53.7
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.3e-95 354.0 396 53.8
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 2.0e-94 350.9 376 54.3
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 2.0e-94 350.9 360 54.2
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 4.4e-94 349.7 385 56.4
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 5.8e-94 349.4 386 53.4
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 9.8e-94 348.6 354 56.2
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 9.8e-94 348.6 390 52.8
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 3.2e-92 343.6 370 54.1
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 5.4e-92 342.8 400 51.5
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 9.2e-92 342.0 384 54.2
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.6e-91 341.3 386 53.1
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 2.7e-91 340.5 381 52.2
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 4.6e-91 339.7 400 51.2
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 3.0e-90 337.0 370 53.5
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 6.6e-90 335.9 422 49.3
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 2.5e-89 334.0 382 52.4
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 2.5e-89 334.0 337 74.2
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 1.2e-88 331.6 538 51.7
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 1.1e-87 328.6 387 52.2
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.4e-87 328.2 390 49.7
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.8e-87 327.8 354 54.8
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 6.8e-87 325.9 348 54.6
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 6.8e-87 325.9 379 50.7
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 1.5e-86 324.7 488 53.9
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 5.8e-86 322.8 349 52.1
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 1.3e-85 321.6 381 51.2
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.2e-85 320.9 381 51.2
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 3.7e-85 320.1 349 51.6
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 3.2e-84 317.0 510 55.9
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 3.2e-84 317.0 386 51.0
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 4.1e-84 316.6 399 50.6
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 2.1e-83 314.3 375 52.8
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 4.6e-83 313.2 383 50.7
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 6.0e-83 312.8 515 51.1
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 6.0e-83 312.8 394 49.2
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 1.0e-82 312.0 638 38.6
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 3.9e-82 310.1 402 49.8
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 1.5e-81 308.1 349 50.4
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 2.5e-81 307.4 375 49.6
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 3.3e-81 307.0 384 49.0
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.2e-80 305.1 383 49.6
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 2.8e-80 303.9 381 49.6
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 4.7e-80 303.1 352 50.9
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 1.4e-79 301.6 390 50.0
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 3.1e-79 300.4 381 49.6
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 8.9e-79 298.9 335 51.3
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.5e-78 298.1 382 48.4
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 1.3e-77 295.0 387 47.8
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 2.2e-77 294.3 343 51.9
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 2.2e-77 294.3 351 51.3
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 6.4e-77 292.7 379 48.3
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 4.1e-76 290.0 381 49.6
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.2e-75 288.5 401 46.4
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 2.1e-75 287.7 382 46.9
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 3.5e-75 287.0 392 47.4
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.7e-74 284.6 502 50.4
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 1.7e-74 284.6 379 46.2
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 5.1e-74 283.1 344 48.0
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 1.9e-73 281.2 375 46.7
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 9.6e-73 278.9 381 48.6
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 9.6e-73 278.9 378 46.3
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 2.8e-72 277.3 377 48.0
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 1.4e-71 275.0 362 48.3
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 2.0e-70 271.2 329 49.5
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 4.4e-70 270.0 504 48.6
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 1.3e-69 268.5 257 58.8
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 1.7e-69 268.1 376 46.8
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 4.2e-68 263.5 383 45.4
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 1.2e-67 261.9 359 46.8
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 5.1e-66 256.5 362 46.1
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 1.1e-65 255.4 259 63.3
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.9e-65 254.6 344 49.7
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.1e-64 251.1 341 44.3
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 1.4e-63 248.4 356 46.3
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.5e-62 245.0 340 43.2
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 2.6e-62 244.2 342 49.1
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 4.5e-62 243.4 366 45.1
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 3.2e-60 237.3 452 48.7
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 1.0e-58 232.3 393 53.9
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.3e-58 231.9 379 43.3
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.9e-57 228.0 369 41.7
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.3e-57 226.9 333 41.1
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 5.6e-57 226.5 442 50.2
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 2.8e-56 224.2 334 46.7
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 2.8e-56 224.2 343 45.8
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 4.8e-56 223.4 428 41.4
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 5.3e-55 219.9 343 44.3
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 6.9e-55 219.5 331 45.6
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 1.5e-54 218.4 342 45.0
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 7.6e-54 216.1 340 44.7
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 1.7e-53 214.9 359 44.0
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.8e-53 213.8 286 67.1
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 1.2e-51 208.8 329 43.8
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 3.5e-51 207.2 342 43.3
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 3.3e-49 200.7 182 93.4
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 4.8e-48 196.8 378 41.3
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 6.2e-48 196.4 378 41.3
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 1.2e-46 192.2 342 42.4
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.5e-46 191.8 165 59.4
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 4.5e-46 190.3 342 40.4
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 5.8e-46 189.9 232 51.7
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 2.5e-44 184.5 299 41.1
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 2.5e-44 184.5 342 41.8
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 2.5e-44 184.5 342 42.1
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 4.2e-44 183.7 342 41.5
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 3.5e-43 180.6 297 45.5
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.5e-43 180.6 287 38.7
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 7.9e-43 179.5 488 42.0
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 2.3e-42 177.9 284 64.8
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 9.6e-41 172.6 227 66.5
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 5.0e-37 160.2 74 94.6
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 4.2e-36 157.1 229 67.7
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 7.9e-35 152.9 267 42.7
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 7.9e-35 152.9 130 54.6
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 2.3e-34 151.4 396 34.6
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.9e-34 150.6 196 76.5
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.9e-34 150.6 136 57.4
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 5.1e-34 150.2 134 55.2
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.3e-33 147.1 134 56.0
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-32 145.6 136 55.9
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.6e-32 145.2 257 63.8
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 6.9e-31 139.8 304 32.2
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-29 135.6 290 33.1
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 5.0e-29 133.7 208 46.2
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-27 128.6 134 47.8
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.1e-27 128.3 220 68.2
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.6e-27 127.1 229 64.6
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.6e-27 127.1 229 64.6
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 6.1e-27 126.7 376 32.4
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-26 125.9 207 70.5
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 1.8e-26 125.2 357 32.2
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 1.8e-26 125.2 353 31.4
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 3.0e-26 124.4 143 49.0
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 3.0e-26 124.4 143 49.0
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.8e-26 122.9 135 45.9
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 4.4e-25 120.6 135 45.2
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 4.4e-25 120.6 135 45.2
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.3e-24 119.0 349 35.8
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.7e-24 118.6 100 55.0
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.7e-24 117.5 88 59.1
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.8e-24 117.1 207 60.4
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 1.1e-23 115.9 209 45.9
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.3e-23 113.6 122 59.0
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 9.1e-23 112.8 229 33.2
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.5e-22 112.1 349 33.8
SEGI_32752 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.5e-22 112.1 60 81.7
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.5e-22 112.1 97 53.6
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.0e-21 107.1 207 61.8
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.5e-21 106.3 65 66.2
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 8.5e-21 106.3 172 35.5
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.6e-17 94.7 53 69.8
Actinidia13019 Actinidia chinensis HOM05D003406 ORTHO05D004026 3.3e-17 94.4 164 45.7
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.5e-14 84.3 98 42.9
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 1.5e-12 79.0 283 35.3
Aqoxy2G01592 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 5.5e-12 77.0 156 39.7
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-11 75.9 54 61.1
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 2.3e-10 71.6 30 100.0
Hma1.2p1_1396F.1_g280660 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 5.2e-10 70.5 122 44.3
Actinidia19465 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.4e-09 67.4 245 35.9
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.0e-06 58.5 38 65.8
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 2.7e-06 58.2 64 40.6
Aa31LG8G12410 Aethionema arabicum HOM05D061913 ORTHO05D030983 2.7e-06 58.2 45 60.0


User provided reference genes

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