Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 0.0e+00 1092.8 556 100.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.8e-232 809.3 594 71.7
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.9e-229 799.3 601 68.4
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 5.6e-229 797.7 601 70.0
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.0e-227 792.0 603 67.5
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 5.7e-226 787.7 601 67.6
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 9.8e-226 786.9 605 66.4
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 3.7e-225 785.0 601 68.7
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 4.9e-225 784.6 617 66.1
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 2.4e-224 782.3 592 69.6
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 4.1e-224 781.6 609 66.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.6e-223 778.1 601 66.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 7.8e-223 777.3 604 67.2
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 1.7e-222 776.2 601 67.2
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 2.3e-222 775.8 593 66.9
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 3.9e-222 775.0 604 66.6
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.9e-221 772.7 601 66.9
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 7.3e-221 770.8 602 67.1
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.6e-220 769.6 625 65.8
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.8e-220 768.8 592 66.2
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 6.2e-220 767.7 604 66.2
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 8.0e-220 767.3 601 66.9
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.0e-219 766.9 599 67.9
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.4e-219 766.5 602 66.9
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.8e-219 766.1 602 67.3
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.3e-219 765.8 601 65.4
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 4.0e-219 765.0 596 67.1
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.9e-219 763.8 602 66.4
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.5e-218 763.1 593 66.1
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.3e-217 760.0 600 66.5
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.7e-217 759.6 601 65.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.2e-217 759.2 601 66.4
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.9e-217 758.8 596 66.4
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 2.9e-217 758.8 604 65.1
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 6.4e-217 757.7 596 66.3
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.4e-216 756.5 604 64.9
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 3.2e-216 755.4 595 65.9
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.2e-216 755.4 602 65.9
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 4.1e-216 755.0 604 65.2
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 4.1e-216 755.0 607 66.1
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 7.0e-216 754.2 602 66.4
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 2.0e-215 752.7 596 65.3
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 3.5e-215 751.9 593 65.8
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 3.5e-215 751.9 604 65.7
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 4.6e-215 751.5 604 64.2
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 4.6e-215 751.5 591 64.8
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 4.6e-215 751.5 649 61.3
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 7.8e-215 750.7 605 65.6
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.7e-214 749.6 605 64.3
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 2.3e-214 749.2 568 68.1
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.0e-214 748.8 602 65.0
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 6.6e-214 747.7 602 64.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 8.6e-214 747.3 604 64.1
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.5e-213 746.5 604 65.2
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.5e-213 746.5 613 64.6
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.9e-213 746.1 613 63.3
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 4.3e-213 745.0 594 65.3
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 4.3e-213 745.0 604 64.7
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 9.5e-213 743.8 604 64.1
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.2e-212 743.4 602 65.0
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.2e-212 743.4 616 63.6
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.1e-212 742.7 602 64.3
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.6e-212 741.9 592 65.5
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 4.7e-212 741.5 604 64.7
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 8.1e-212 740.7 592 65.5
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 1.8e-211 739.6 601 64.7
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.3e-211 739.2 604 64.6
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 2.0e-210 736.1 603 65.2
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 2.0e-210 736.1 601 63.9
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 5.8e-210 734.6 603 63.7
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 7.5e-210 734.2 599 64.9
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.9e-209 732.3 603 64.8
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 4.9e-209 731.5 607 64.9
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 8.3e-209 730.7 658 59.7
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 2.4e-208 729.2 601 63.1
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 2.4e-208 729.2 601 63.1
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 2.4e-208 729.2 601 63.1
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 3.2e-208 728.8 601 62.9
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 3.2e-208 728.8 595 64.9
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 7.1e-208 727.6 601 63.1
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 7.1e-208 727.6 601 62.7
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 7.1e-208 727.6 598 64.2
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.2e-207 726.9 607 63.9
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 1.2e-207 726.9 619 62.5
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 3.5e-207 725.3 597 63.5
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.5e-207 725.3 599 64.4
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 6.0e-207 724.5 601 63.1
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 6.0e-207 724.5 601 63.4
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.0e-206 723.8 592 63.0
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 3.0e-206 722.2 596 62.9
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.5e-205 719.9 597 63.5
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 3.3e-205 718.8 603 62.7
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 4.3e-205 718.4 682 57.6
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 9.5e-205 717.2 599 62.4
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 9.5e-205 717.2 570 66.7
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.6e-204 716.5 591 63.5
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.4e-200 703.4 596 62.9
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 3.5e-199 698.7 562 64.6
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 1.3e-198 696.8 548 66.8
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.5e-197 692.6 552 65.2
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.7e-196 688.3 564 64.5
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.4e-195 686.8 625 59.7
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.9e-192 676.4 611 60.4
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.2e-192 675.2 504 70.4
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.1e-189 667.2 551 63.7
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.9e-189 666.4 603 60.7
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 4.3e-189 665.2 598 61.2
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.4e-187 660.2 567 62.3
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 4.0e-187 658.7 604 57.1
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.0e-186 656.4 601 57.2
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 5.8e-186 654.8 643 57.4
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.4e-185 651.4 592 60.1
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.1e-181 640.6 656 53.4
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.2e-175 620.5 479 67.6
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.8e-172 608.6 459 67.8
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.9e-171 604.7 526 62.7
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.9e-169 599.4 477 65.6
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 5.7e-157 558.5 441 65.1
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.6e-156 557.0 504 61.9
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.1e-149 534.3 606 48.5
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 1.7e-148 530.4 437 62.0
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 1.1e-147 527.7 579 48.7
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.8e-147 526.9 427 64.6
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.8e-140 503.1 601 46.1
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 4.2e-136 489.2 376 66.5
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.0e-125 453.8 330 71.2
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.2e-117 427.9 329 72.6
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 4.1e-115 419.5 604 41.1
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-114 417.2 367 60.2
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 2.7e-114 416.8 571 41.7
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.0e-109 400.6 260 82.7
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.6e-109 400.2 504 47.6
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.5e-104 384.4 288 70.1
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.5e-101 374.4 429 49.0
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.5e-98 363.2 317 60.6
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 6.6e-89 332.4 278 61.5
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 8.4e-84 315.5 292 58.6
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 8.4e-60 235.7 683 28.8
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 9.0e-54 215.7 181 66.9
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 6.0e-50 203.0 560 28.6
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.5e-44 182.6 102 85.3
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.1e-43 182.2 120 76.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.4e-38 164.5 112 72.3
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 6.5e-36 156.4 149 59.7
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 3.2e-35 154.1 142 60.6
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.3e-33 147.9 618 26.4
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.0e-32 144.8 120 58.3
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.7e-26 124.4 163 43.6
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.7e-20 105.1 79 59.5
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 2.9e-20 104.4 98 53.1
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.8e-20 104.0 98 52.0
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 4.7e-18 97.1 72 62.5
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 3.3e-16 90.9 70 58.6
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 3.7e-15 87.4 72 52.8
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.4e-14 85.5 49 79.6
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 7.0e-14 83.2 48 79.2
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.0e-12 79.3 96 47.9
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 5.5e-11 73.6 53 75.5
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.6e-10 72.0 53 73.6
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 2.1e-10 71.6 61 63.9
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.6e-10 70.9 94 44.7
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 2.3e-09 68.2 69 50.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 4.4e-08 63.9 54 63.0


User provided reference genes

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