Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 2.0e-183 645.6 309 100.0
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.0e-115 420.6 289 67.5
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 6.2e-113 411.4 292 66.1
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.4e-112 410.2 295 65.4
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 3.1e-112 409.1 300 63.3
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.6e-111 406.0 293 63.8
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.2e-110 402.9 291 64.3
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 6.4e-110 401.4 291 63.9
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 6.4e-110 401.4 286 65.4
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 8.4e-110 401.0 294 63.3
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 3.2e-109 399.1 286 64.7
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 3.2e-109 399.1 292 63.7
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 9.3e-109 397.5 288 62.8
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 3.5e-108 395.6 298 61.4
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 7.9e-108 394.4 286 64.3
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.0e-107 394.0 288 62.2
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.0e-107 394.0 288 61.5
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 1.3e-107 393.7 291 62.2
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 2.3e-107 392.9 288 62.5
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 2.3e-107 392.9 287 64.1
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 3.0e-107 392.5 282 63.8
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 3.0e-107 392.5 304 61.2
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 3.0e-107 392.5 285 62.5
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.5e-106 390.2 298 60.4
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 2.5e-106 389.4 303 60.1
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 3.3e-106 389.0 287 63.8
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 4.3e-106 388.7 288 62.2
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 9.6e-106 387.5 306 59.5
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.6e-105 386.7 288 61.8
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.6e-105 386.7 306 59.5
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 2.1e-105 386.3 304 59.2
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 2.8e-105 386.0 298 60.1
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 4.8e-105 385.2 285 62.5
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 1.4e-104 383.6 309 58.3
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 1.8e-104 383.3 288 59.0
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.8e-104 383.3 285 61.1
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 2.4e-104 382.9 285 61.1
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.9e-104 381.3 307 60.6
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 2.6e-103 379.4 286 61.5
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 2.6e-103 379.4 304 58.9
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 3.4e-103 379.0 297 62.3
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 5.8e-103 378.3 299 58.5
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.7e-102 376.7 285 60.7
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 2.9e-102 375.9 316 57.9
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 4.9e-102 375.2 291 61.2
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.4e-101 373.6 283 60.1
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.5e-101 372.9 258 66.3
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 4.6e-100 368.6 247 66.8
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 6.0e-100 368.2 285 61.8
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.0e-99 367.5 292 59.2
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.0e-99 367.5 249 68.3
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.3e-99 367.1 288 58.7
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 3.9e-99 365.5 309 58.9
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 1.5e-98 363.6 283 58.7
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 4.3e-98 362.1 256 66.4
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 7.4e-98 361.3 292 58.6
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 7.4e-98 361.3 286 56.6
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 9.6e-98 360.9 286 57.0
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 9.6e-98 360.9 299 54.2
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.6e-97 360.1 285 57.5
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.8e-96 356.7 246 65.9
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 2.4e-96 356.3 286 55.9
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 4.1e-96 355.5 286 55.6
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 4.1e-96 355.5 305 57.4
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 5.3e-96 355.1 279 58.1
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 6.9e-96 354.8 290 54.5
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 9.0e-96 354.4 280 59.6
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.2e-95 354.0 252 63.5
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.0e-95 353.2 278 59.7
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 2.0e-95 353.2 278 59.7
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 7.6e-95 351.3 301 57.8
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 1.0e-94 350.9 284 56.3
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.0e-94 350.9 290 54.5
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.9e-94 349.4 296 54.7
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 2.9e-94 349.4 292 53.1
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 5.0e-94 348.6 255 62.4
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.1e-93 347.4 298 52.7
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.5e-93 346.3 290 54.8
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 4.2e-93 345.5 285 55.1
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 6.1e-92 341.7 217 70.5
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 2.5e-90 336.3 301 51.8
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.3e-89 334.0 245 62.0
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 1.6e-89 333.6 245 64.1
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 3.4e-87 325.9 280 52.9
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.9e-87 325.1 283 53.4
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.0e-86 324.3 263 55.9
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 7.2e-85 318.2 279 53.0
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 8.2e-81 304.7 298 47.7
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 3.1e-80 302.8 278 51.4
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 5.9e-79 298.5 291 52.2
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.0e-78 297.7 306 49.0
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.9e-78 296.2 283 50.9
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 2.9e-78 296.2 265 53.2
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.5e-78 295.0 306 48.7
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.4e-77 293.9 278 49.6
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.4e-75 287.3 190 67.4
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.1e-74 284.3 194 66.0
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 9.7e-74 281.2 212 62.3
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.3e-73 280.8 288 47.6
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.3e-73 280.8 225 59.6
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 6.3e-73 278.5 187 65.8
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.6e-71 273.9 284 48.2
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 2.0e-71 273.5 185 64.9
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 2.6e-66 256.5 161 70.2
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.4e-64 250.0 153 70.6
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.9e-62 243.0 299 44.5
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 2.7e-60 236.5 153 66.0
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.5e-55 219.5 240 49.2
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.5e-53 214.2 240 48.3
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.1e-52 210.3 175 56.6
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 2.3e-51 206.8 148 62.8
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.8e-48 197.2 293 39.9
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.9e-46 189.9 163 60.1
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.0e-43 181.4 195 51.8
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.2e-43 179.1 229 47.2
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 6.8e-43 178.7 215 37.2
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 9.8e-42 174.9 127 62.2
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 3.5e-39 166.4 111 64.9
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 4.6e-39 166.0 135 59.3
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.9e-37 160.6 148 53.4
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 2.0e-34 150.6 128 58.6
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 5.4e-32 142.5 127 55.1
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 7.3e-29 132.1 277 29.6
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 6.8e-27 125.6 102 59.8
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 3.4e-26 123.2 102 59.8
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 9.8e-26 121.7 73 68.5
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 6.4e-25 119.0 105 54.3
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.8e-17 93.2 76 53.9
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 9.2e-16 88.6 65 64.6
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.0e-14 83.6 85 51.8
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.2e-12 78.2 69 55.1
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.4e-11 74.7 160 32.5
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.1e-08 65.1 70 47.1


User provided reference genes

Program Settings