Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 2.1e-92 342.4 184 100.0
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 7.1e-56 221.1 122 91.0
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.3e-52 210.3 189 58.7
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 1.6e-52 209.9 188 56.9
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.6e-52 209.9 187 58.3
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 8.1e-52 207.6 188 55.9
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 2.4e-51 206.1 189 58.2
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 5.3e-51 204.9 185 56.2
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 6.9e-51 204.5 187 56.7
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 9.0e-51 204.1 185 55.1
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.5e-50 203.4 187 55.6
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.0e-50 203.0 190 55.3
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.0e-50 203.0 189 53.4
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 2.6e-50 202.6 193 57.0
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 3.4e-50 202.2 188 56.4
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.5e-50 201.8 186 55.4
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.2e-49 199.5 187 55.1
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 2.2e-49 199.5 189 56.1
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 6.4e-49 198.0 186 55.9
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 8.4e-49 197.6 190 54.7
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 8.4e-49 197.6 188 53.7
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 8.4e-49 197.6 188 53.7
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.1e-48 197.2 187 55.1
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.4e-48 196.8 188 53.2
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.9e-48 196.4 187 54.5
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.9e-48 196.4 187 55.1
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.4e-48 196.1 190 53.2
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 4.2e-48 195.3 189 55.6
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 5.4e-48 194.9 189 54.5
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.4e-48 194.9 188 54.3
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 7.1e-48 194.5 191 53.4
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.2e-47 193.7 187 55.1
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 1.2e-47 193.7 187 54.0
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.6e-47 193.4 187 54.0
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.7e-47 192.6 186 55.9
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 2.7e-47 192.6 188 53.2
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.7e-47 192.6 187 54.5
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 3.5e-47 192.2 189 51.9
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 3.5e-47 192.2 187 54.5
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.6e-47 191.8 187 51.9
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 7.9e-47 191.0 186 53.8
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.0e-46 190.7 186 52.2
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 1.0e-46 190.7 187 52.9
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 1.3e-46 190.3 186 52.2
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.8e-46 189.9 186 52.7
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 2.3e-46 189.5 186 52.7
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 2.3e-46 189.5 186 52.7
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 3.0e-46 189.1 184 51.1
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 3.9e-46 188.7 192 52.6
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 5.1e-46 188.3 189 54.0
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.1e-45 187.2 189 52.9
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 1.1e-45 187.2 189 52.9
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.1e-45 187.2 186 53.2
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.1e-45 187.2 186 53.2
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.1e-45 187.2 186 53.2
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.5e-45 186.8 189 52.9
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.5e-45 186.8 186 51.6
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.5e-45 186.8 192 50.0
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.9e-45 186.4 186 52.7
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 4.3e-45 185.3 192 52.6
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 4.3e-45 185.3 192 49.0
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.3e-45 185.3 187 51.3
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 4.3e-45 185.3 187 52.4
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 5.6e-45 184.9 186 51.6
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 7.4e-45 184.5 185 50.8
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 9.6e-45 184.1 184 52.7
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 9.6e-45 184.1 187 51.3
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 9.6e-45 184.1 187 51.3
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 1.3e-44 183.7 192 50.0
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.3e-44 183.7 188 48.9
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.1e-44 183.0 192 48.4
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 2.8e-44 182.6 188 48.9
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 3.7e-44 182.2 189 51.3
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 4.8e-44 181.8 188 49.5
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 4.8e-44 181.8 187 52.4
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 8.1e-44 181.0 187 54.5
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.1e-43 180.6 191 50.8
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.1e-43 180.6 191 50.8
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.1e-43 180.6 191 51.8
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.4e-43 180.3 190 51.6
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.8e-43 179.9 194 48.5
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 3.1e-43 179.1 191 51.3
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 3.1e-43 179.1 191 51.3
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 4.0e-43 178.7 187 51.3
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 5.3e-43 178.3 191 50.8
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.3e-43 178.3 194 47.9
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.3e-43 178.3 192 47.4
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.3e-43 178.3 194 47.9
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 6.9e-43 177.9 187 51.3
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 9.0e-43 177.6 191 50.8
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 9.0e-43 177.6 191 50.8
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.2e-42 177.2 191 50.8
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 2.0e-42 176.4 189 50.8
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 2.6e-42 176.0 186 47.8
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 2.6e-42 176.0 196 49.0
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 3.4e-42 175.6 192 48.4
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 4.5e-42 175.3 193 46.1
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 7.6e-42 174.5 178 48.9
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 1.0e-41 174.1 187 50.3
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.3e-41 173.7 189 50.3
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 4.9e-41 171.8 191 49.2
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 6.5e-41 171.4 185 44.9
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.1e-40 170.6 191 47.6
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.1e-40 170.6 188 51.1
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 3.2e-40 169.1 193 46.6
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 3.2e-40 169.1 187 56.1
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.2e-39 167.2 189 48.1
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 2.1e-39 166.4 187 47.1
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.1e-39 166.4 185 49.2
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 3.5e-39 165.6 187 47.1
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 6.0e-39 164.9 188 48.4
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 6.0e-39 164.9 187 44.9
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 3.0e-38 162.5 194 44.3
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 3.9e-38 162.2 193 44.6
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.1e-37 160.6 192 46.9
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.5e-37 160.2 187 47.1
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 1.5e-37 160.2 193 46.1
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.5e-37 160.2 192 49.0
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.9e-37 159.8 193 46.1
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.9e-37 159.8 186 47.3
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 4.3e-37 158.7 190 45.8
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 4.3e-37 158.7 187 47.1
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 5.7e-37 158.3 194 44.3
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 9.6e-37 157.5 186 46.8
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 2.8e-36 156.0 188 46.3
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 3.7e-36 155.6 188 46.8
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 3.7e-36 155.6 189 41.8
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 6.2e-36 154.8 188 46.8
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 1.1e-35 154.1 189 44.4
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 1.8e-35 153.3 158 55.1
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 4.1e-35 152.1 188 46.3
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 4.1e-35 152.1 193 44.0
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 5.3e-35 151.8 177 46.9
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 5.3e-35 151.8 187 48.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 3.4e-34 149.1 173 47.4
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.3e-33 147.1 186 41.4
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.7e-33 146.7 201 42.3
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.7e-33 146.7 173 46.2
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.2e-33 146.4 177 45.2
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.8e-33 145.6 187 43.3
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 1.2e-31 140.6 94 66.0
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 4.6e-31 138.7 124 54.0
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 5.1e-30 135.2 101 64.4
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.5e-29 133.7 172 44.2
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.5e-29 133.7 101 63.4
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 2.5e-29 132.9 184 43.5
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 5.7e-29 131.7 185 39.5
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 9.7e-29 131.0 91 72.5
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.2e-26 124.0 199 35.7
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.2e-25 119.8 190 35.3
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 5.1e-22 108.6 87 64.4
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 6.7e-22 108.2 184 34.2
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 2.4e-19 99.8 80 61.2
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.1e-19 99.0 66 68.2
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 4.1e-19 99.0 189 34.9
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 2.0e-18 96.7 113 43.4
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 3.2e-16 89.4 58 69.0
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.2e-15 87.4 108 44.4
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.7e-15 86.3 106 43.4
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.7e-15 86.3 106 43.4
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-13 80.9 106 41.5
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.4e-11 73.9 105 39.0


User provided reference genes

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