Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 0.0e+00 1139.8 583 100.0
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 5.3e-206 721.5 606 64.4
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.1e-203 713.8 588 67.2
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 6.1e-202 708.0 609 65.2
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 6.7e-201 704.5 602 63.3
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 1.2e-197 693.7 611 61.0
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 8.5e-196 687.6 603 62.5
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 8.5e-196 687.6 613 60.8
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 1.4e-195 686.8 603 62.4
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.5e-192 676.8 610 60.7
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 2.9e-188 662.5 606 59.1
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 6.5e-188 661.4 626 58.0
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 4.7e-186 655.2 612 58.8
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 1.4e-185 653.7 612 58.5
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 3.0e-185 652.5 584 61.5
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 4.0e-185 652.1 610 59.3
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 3.1e-182 642.5 609 57.8
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.6e-181 640.2 611 58.3
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.7e-181 639.4 745 51.7
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.9e-181 638.3 611 57.8
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 3.8e-180 635.6 602 57.1
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 1.5e-179 633.6 597 59.0
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 1.9e-179 633.3 612 57.7
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.3e-177 626.3 610 56.6
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 3.0e-177 625.9 610 57.0
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 4.0e-177 625.5 610 56.6
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 2.0e-176 623.2 610 56.6
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 3.4e-176 622.5 563 60.9
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 9.8e-176 620.9 612 56.4
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 9.8e-176 620.9 603 57.7
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 1.7e-175 620.2 611 57.1
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 6.3e-175 618.2 611 56.0
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 1.8e-174 616.7 611 55.8
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 1.6e-173 613.6 607 55.2
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.5e-173 612.5 600 57.5
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 2.2e-172 609.8 614 55.5
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.8e-172 609.0 601 58.4
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 5.0e-172 608.6 715 51.2
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 8.5e-172 607.8 610 55.6
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 3.2e-171 605.9 611 55.3
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 1.2e-168 597.4 599 55.3
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 2.0e-168 596.7 610 56.2
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 4.4e-168 595.5 706 49.3
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 7.5e-168 594.7 623 54.9
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 1.7e-167 593.6 613 55.3
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 2.2e-167 593.2 611 55.2
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 2.8e-167 592.8 606 55.3
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 9.2e-166 587.8 609 54.4
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.6e-165 587.0 611 54.3
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 3.8e-164 582.4 491 63.7
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 8.6e-164 581.3 572 57.9
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.5e-163 580.5 607 54.7
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 4.3e-163 578.9 578 56.2
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 5.6e-163 578.6 601 55.1
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.0e-160 570.1 597 55.3
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 2.6e-160 569.7 601 54.4
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.7e-160 568.5 603 53.4
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 1.8e-158 563.5 597 54.4
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 3.2e-158 562.8 610 53.3
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 4.1e-158 562.4 585 53.5
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 7.0e-158 561.6 610 51.3
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 7.8e-157 558.1 639 51.5
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.0e-156 557.8 613 52.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 1.0e-156 557.8 612 52.9
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 2.3e-156 556.6 613 51.5
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 3.0e-156 556.2 599 52.9
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 8.6e-156 554.7 610 52.1
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.1e-155 554.3 611 52.2
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 1.9e-155 553.5 610 51.5
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 3.3e-155 552.7 610 51.8
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.8e-154 549.7 610 50.5
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 3.6e-154 549.3 612 51.6
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.8e-153 547.0 601 51.4
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 6.8e-153 545.0 635 50.2
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.5e-152 543.9 611 50.6
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 7.5e-152 541.6 603 51.6
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.3e-151 540.8 606 52.0
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 1.7e-151 540.4 611 51.2
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.9e-151 539.7 449 65.5
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 4.9e-151 538.9 606 51.0
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 4.9e-151 538.9 661 49.8
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.4e-150 537.3 604 51.0
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 1.4e-150 537.3 605 51.1
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 3.2e-150 536.2 604 50.8
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.3e-148 530.8 592 50.8
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.3e-148 530.0 603 50.9
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.5e-147 527.3 727 44.7
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 3.3e-147 526.2 608 50.0
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 4.3e-147 525.8 604 50.2
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 4.3e-147 525.8 604 50.2
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 4.3e-147 525.8 604 50.2
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 4.3e-147 525.8 605 50.1
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 3.6e-146 522.7 610 50.8
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 4.7e-146 522.3 670 47.3
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.1e-145 521.2 511 55.8
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.3e-145 520.0 592 50.7
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.3e-143 514.2 367 73.6
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 3.7e-143 512.7 470 60.2
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 1.1e-142 511.1 563 52.2
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.5e-139 500.7 606 48.7
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 7.3e-139 498.4 610 47.5
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.1e-137 494.6 515 53.2
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 8.9e-137 491.5 597 47.2
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.2e-136 491.1 493 57.0
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 4.4e-136 489.2 610 49.0
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 2.9e-135 486.5 585 48.9
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 3.3e-131 473.0 525 52.0
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 6.2e-130 468.8 609 48.1
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.4e-129 467.6 603 45.8
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 4.0e-129 466.1 414 60.1
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 3.4e-128 463.0 606 47.0
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.5e-123 447.6 587 47.2
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.3e-122 444.5 367 65.4
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 5.4e-118 429.1 427 55.7
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 3.5e-109 399.8 421 54.6
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 1.0e-108 398.3 478 49.6
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 8.4e-103 378.6 375 57.1
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 1.4e-102 377.9 459 49.9
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 9.3e-102 375.2 569 43.1
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 3.3e-99 366.7 393 52.9
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 5.7e-99 365.9 478 47.7
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 7.4e-99 365.5 610 40.8
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 4.2e-86 323.2 552 40.4
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.3e-82 311.6 389 49.1
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.1e-81 305.4 464 42.7
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.0e-76 292.0 414 44.0
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 6.7e-76 289.3 350 49.4
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.6e-75 287.3 380 46.8
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 1.8e-73 281.2 225 65.3
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.0e-68 265.4 315 48.9
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-64 251.9 341 46.3
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 5.2e-60 236.5 222 59.5
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-56 225.3 350 41.1
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.6e-56 224.9 171 63.2
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 2.7e-56 224.2 478 36.6
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.5e-56 223.4 212 57.1
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-55 221.1 257 47.9
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.5e-54 217.6 312 45.8
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 8.8e-52 209.1 218 54.1
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.4e-49 201.8 202 56.4
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.7e-48 197.6 291 43.6
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 1.0e-47 195.7 175 59.4
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 1.0e-47 195.7 213 52.6
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.3e-47 195.3 175 59.4
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 7.3e-46 189.5 144 70.1
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.8e-45 187.6 218 47.7
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 5.2e-44 183.3 120 74.2
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.7e-39 168.3 187 53.5
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 3.9e-39 167.2 250 42.4
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 5.6e-38 163.3 150 60.0
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.2e-37 162.2 206 46.6
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 2.0e-35 154.8 167 52.7
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.7e-32 144.4 222 41.0
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 2.3e-31 141.4 236 39.8
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.9e-25 121.7 165 42.4
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 8.1e-21 106.3 304 28.6
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 2.3e-20 104.8 80 63.8
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 1.5e-19 102.1 501 25.3
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 5.8e-19 100.1 76 65.8
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 5.8e-19 100.1 69 71.0
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 9.9e-19 99.4 186 35.5
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 2.9e-18 97.8 157 42.0
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 1.1e-17 95.9 159 42.1
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 1.9e-17 95.1 80 58.8
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 1.2e-16 92.4 106 47.2
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 2.1e-16 91.7 180 37.8
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 3.9e-15 87.4 126 39.7
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.1e-14 85.9 73 57.5
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 1.8e-12 78.6 234 26.5
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.2e-11 75.9 68 58.8
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 2.0e-11 75.1 208 33.2
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 1.9e-09 68.6 56 58.9
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.9e-09 68.6 53 64.2
SEGI_40538 Sequoiadendron giganteum HOM05D003810 ORTHO05D004416 3.2e-09 67.8 59 59.3
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 6.0e-08 63.5 49 67.3
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 7.8e-08 63.2 102 38.2
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.3e-07 61.6 216 31.9
Mapoly0063s0044 Marchantia polymorpha HOM05D003810 ORTHO05D004416 2.3e-07 61.6 83 44.6
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.3e-07 61.6 195 28.7
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 8.7e-07 59.7 58 53.4
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.1e-06 59.3 44 61.4
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 1.9e-06 58.5 148 34.5


User provided reference genes

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