Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2540 Ceratophyllum demersum HOM05D068094 ORTHO05D043877 1.1e-226 789.6 389 100.0
CDE02G0694 Ceratophyllum demersum HOM05D068094 ORTHO05D043877 9.7e-63 245.0 170 78.2
Gohir.D05G199500 Gossypium hirsutum HOM05D007745 ORTHO05D009771 2.3e-11 74.3 271 28.0
Duzib041G0319 Durio zibethinus HOM05D007745 ORTHO05D009771 3.0e-11 73.9 300 28.3
GSVIVG01009651001 Vitis vinifera HOM05D007745 ORTHO05D009771 4.3e-10 70.1 395 25.6
Gohir.A05G196400 Gossypium hirsutum HOM05D007745 ORTHO05D009771 5.6e-10 69.7 271 27.7
Gorai.009G204700 Gossypium raimondii HOM05D007745 ORTHO05D009771 7.3e-10 69.3 390 23.6
Dinv39385 Davidia involucrata HOM05D000626 ORTHO05D000824 2.8e-09 67.4 294 25.9
Dinv36046 Davidia involucrata HOM05D007745 ORTHO05D009771 3.6e-09 67.0 403 25.8
Sc02g0006490 Simmondsia chinensis HOM05D007745 ORTHO05D009771 6.2e-09 66.2 141 30.5
Lj4A44T41 Lonicera japonica HOM05D007745 ORTHO05D009771 1.1e-08 65.5 399 24.3
PSO541G3078 Papaver somniferum HOM05D007745 ORTHO05D009771 1.4e-08 65.1 416 23.6
Gohir.D11G035200 Gossypium hirsutum HOM05D000010 ORTHO05D000302 1.8e-08 64.7 124 33.9
Gorai.007G038100 Gossypium raimondii HOM05D000010 ORTHO05D000302 1.8e-08 64.7 124 33.9
CSS0036766 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 3.1e-08 63.9 300 26.3
FAN27G0058 Fragaria x ananassa HOM05D007745 ORTHO05D009771 3.1e-08 63.9 306 25.2
THA.LOC104801492 Tarenaya hassleriana HOM05D000010 ORTHO05D000302 3.1e-08 63.9 135 30.4
Gohir.A11G031781 Gossypium hirsutum HOM05D000010 ORTHO05D000302 4.0e-08 63.5 124 33.1
Duzib068G1144 Durio zibethinus HOM05D000010 ORTHO05D000302 6.8e-08 62.8 142 31.7
Pp3c3_25610 Physcomitrium patens HOM05D000010 ORTHO05D000302 8.9e-08 62.4 155 24.5
SEGI_27986 Sequoiadendron giganteum HOM05D000010 ORTHO05D000063 8.9e-08 62.4 168 30.4
THA.LOC104819413 Tarenaya hassleriana HOM05D000010 ORTHO05D000302 8.9e-08 62.4 128 30.5
ATR0582G162 Amborella trichopoda HOM05D000010 ORTHO05D001550 1.2e-07 62.0 114 28.9
Lalb_Chr11g0064291 Lupinus albus HOM05D000010 ORTHO05D000302 1.2e-07 62.0 145 29.0
Haze_00316 Corylus avellana HOM05D000010 ORTHO05D000063 1.5e-07 61.6 215 27.4
FAN20G1509 Fragaria x ananassa HOM05D007745 ORTHO05D009771 1.5e-07 61.6 104 33.7
ECA232G1309 Erigeron canadensis HOM05D000010 ORTHO05D000302 2.0e-07 61.2 185 27.0
Gohir.A06G011800 Gossypium hirsutum HOM05D007745 ORTHO05D009771 2.0e-07 61.2 276 27.2
Gohir.D12G181100 Gossypium hirsutum HOM05D000010 ORTHO05D000302 2.0e-07 61.2 142 31.0
Gorai.008G194400 Gossypium raimondii HOM05D000010 ORTHO05D000302 2.0e-07 61.2 142 31.0
Nn1g05100 Nelumbo nucifera HOM05D000010 ORTHO05D009771 2.0e-07 61.2 218 31.2
Duzib205G0167 Durio zibethinus HOM05D000010 ORTHO05D000302 2.6e-07 60.8 142 31.0
Gohir.A12G178600 Gossypium hirsutum HOM05D000010 ORTHO05D000302 2.6e-07 60.8 161 29.2
MD09G1053700 Malus domestica HOM05D000010 ORTHO05D000302 2.6e-07 60.8 144 29.9
vmacro22460 Vaccinium macrocarpon HOM05D000010 ORTHO05D000151 2.6e-07 60.8 59 42.4
Migut.N00516 Erythranthe guttata HOM05D007745 ORTHO05D009771 3.4e-07 60.5 122 30.3
MBI16_g33266_MAGBIO Magnolia biondii HOM05D007745 ORTHO05D009771 3.4e-07 60.5 398 24.1
Manes.02G047801 Manihot esculenta HOM05D000010 ORTHO05D000302 3.4e-07 60.5 128 30.5
AT5G39610 Arabidopsis thaliana HOM05D000010 ORTHO05D000302 4.4e-07 60.1 95 34.7
Glyma.09G235700 Glycine max HOM05D000010 ORTHO05D000302 4.4e-07 60.1 102 33.3
Manes.14G080400 Manihot esculenta HOM05D000010 ORTHO05D000302 4.4e-07 60.1 114 33.3
Thecc.03G092300 Theobroma cacao HOM05D000010 ORTHO05D000302 4.4e-07 60.1 142 31.0
vmacro21613 Vaccinium macrocarpon HOM05D007745 ORTHO05D009771 4.4e-07 60.1 393 22.6
Ciclev10001389m.g Citrus clementina HOM05D007745 ORTHO05D009771 5.8e-07 59.7 411 24.6
MELO3C010923.2 Cucumis melo HOM05D007745 ORTHO05D009771 5.8e-07 59.7 268 26.9
Actinidia06424 Actinidia chinensis HOM05D000010 ORTHO05D000302 7.6e-07 59.3 113 31.0
AT1G32870 Arabidopsis thaliana HOM05D000010 ORTHO05D004316 7.6e-07 59.3 233 27.5
Carub.0006s0665 Capsella rubella HOM05D000010 ORTHO05D000302 7.6e-07 59.3 116 31.9
Cpa.g.sc111.22 Carica papaya HOM05D000010 ORTHO05D000302 7.6e-07 59.3 116 31.9
COL.COLO4_00334 Corchorus olitorius HOM05D000010 ORTHO05D000302 7.6e-07 59.3 142 30.3
Migut.H00942 Erythranthe guttata HOM05D000010 ORTHO05D000302 7.6e-07 59.3 136 29.4
Sp6g35220 Schrenkiella parvula HOM05D000010 ORTHO05D000302 7.6e-07 59.3 116 31.9
THA.LOC104818320 Tarenaya hassleriana HOM05D000010 ORTHO05D000302 7.6e-07 59.3 128 30.5
VMungo0647G0672 Vigna mungo HOM05D000010 ORTHO05D000302 7.6e-07 59.3 158 27.2
Aa31LG11G1970 Aethionema arabicum HOM05D000010 ORTHO05D000302 9.9e-07 58.9 116 31.9
MSTRG.23923 Avicennia marina HOM05D000010 ORTHO05D000302 9.9e-07 58.9 143 29.4
Cpa.g.sc244.7 Carica papaya HOM05D000010 ORTHO05D000302 9.9e-07 58.9 113 30.1
Lj4A112T42 Lonicera japonica HOM05D000010 ORTHO05D000302 9.9e-07 58.9 105 33.3
MBI16_g27546_MAGBIO Magnolia biondii HOM05D007745 ORTHO05D009771 9.9e-07 58.9 302 24.8
Manes.01G093200 Manihot esculenta HOM05D000010 ORTHO05D000302 9.9e-07 58.9 144 29.2
Manes.09G185300 Manihot esculenta HOM05D000010 ORTHO05D001550 9.9e-07 58.9 117 29.9
Nitab4.5_0006603g0010 Nicotiana tabacum HOM05D000010 ORTHO05D000302 9.9e-07 58.9 158 27.2
Os10g0359500 Oryza sativa ssp. japonica HOM05D052549 ORTHO05D000063 9.9e-07 58.9 114 32.5
TWI15G0328 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 9.9e-07 58.9 114 32.5
AT5G61430 Arabidopsis thaliana HOM05D000010 ORTHO05D000302 1.3e-06 58.5 128 29.7
BcaC06g32414 Brassica carinata HOM05D000010 ORTHO05D000302 1.3e-06 58.5 116 31.9
BcaNung06185 Brassica carinata HOM05D000010 ORTHO05D000302 1.3e-06 58.5 116 31.9
C02p03260 Brassica napus HOM05D000010 ORTHO05D000302 1.3e-06 58.5 116 31.9
C09p69760 Brassica napus HOM05D000010 ORTHO05D000302 1.3e-06 58.5 116 31.9
BolC9t59721H Brassica oleracea HOM05D000010 ORTHO05D000302 1.3e-06 58.5 116 31.9
CARHR078180 Cardamine hirsuta HOM05D000010 ORTHO05D000302 1.3e-06 58.5 118 33.9
CiPaw.07G208700 Carya illinoinensis HOM05D000010 ORTHO05D000302 1.3e-06 58.5 110 34.5
Haze_21812 Corylus avellana HOM05D000010 ORTHO05D000302 1.3e-06 58.5 110 34.5
Dinv11513 Davidia involucrata HOM05D000010 ORTHO05D000302 1.3e-06 58.5 98 34.7
FAN13G0851 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.3e-06 58.5 130 30.8
Glyma.18G261300 Glycine max HOM05D000010 ORTHO05D000302 1.3e-06 58.5 79 38.0
Lalb_Chr25g0285171 Lupinus albus HOM05D000010 ORTHO05D006503 1.3e-06 58.5 63 42.9
Sabra12G0019900 Salix brachista HOM05D000010 ORTHO05D000302 1.3e-06 58.5 128 30.5
TPR.G11936 Trifolium pratense HOM05D000010 ORTHO05D000302 1.3e-06 58.5 116 31.9
vmacro22461 Vaccinium macrocarpon HOM05D000010 ORTHO05D000151 1.3e-06 58.5 58 39.7
AL6G18040 Arabidopsis lyrata HOM05D000010 ORTHO05D000302 1.7e-06 58.2 116 31.9
AT5G07680 Arabidopsis thaliana HOM05D000010 ORTHO05D000302 1.7e-06 58.2 116 31.9
BcaB05g21600 Brassica carinata HOM05D000010 ORTHO05D000302 1.7e-06 58.2 116 31.9
CiPaw.03G024500 Carya illinoinensis HOM05D000010 ORTHO05D000302 1.7e-06 58.2 154 28.6
Thhalv10014081m.g Eutrema salsugineum HOM05D000010 ORTHO05D000302 1.7e-06 58.2 116 31.9
Thhalv10027479m.g Eutrema salsugineum HOM05D000010 ORTHO05D000302 1.7e-06 58.2 114 32.5
Nitab4.5_0000568g0080 Nicotiana tabacum HOM05D000010 ORTHO05D000302 1.7e-06 58.2 95 34.7
PSO675G1126 Papaver somniferum HOM05D007745 ORTHO05D009771 1.7e-06 58.2 264 25.0
Phvul.001G059900 Phaseolus vulgaris HOM05D000010 ORTHO05D000302 1.7e-06 58.2 102 32.4
Potri.012G001400 Populus trichocarpa HOM05D000010 ORTHO05D000302 1.7e-06 58.2 141 30.5
Rhsim06G0036400 Rhododendron simsii HOM05D007745 ORTHO05D009771 1.7e-06 58.2 393 23.7
Rhsim09G0030900 Rhododendron simsii HOM05D000010 ORTHO05D000302 1.7e-06 58.2 113 31.0
GSVIVG01008601001 Vitis vinifera HOM05D000010 ORTHO05D001550 1.7e-06 58.2 116 31.0
Aa31LG11G11310 Aethionema arabicum HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 34.5
AL8G38110 Arabidopsis lyrata HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.0
BcaC06g33232 Brassica carinata HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.0
A03p47020 Brassica napus HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.0
C07p45090 Brassica napus HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.0
BolC7t45031H Brassica oleracea HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.0
BraA03t13825Z Brassica rapa HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.0
Carub.0008s2211 Capsella rubella HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.0
CARHR205490 Cardamine hirsuta HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.9
CARHR275190 Cardamine hirsuta HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.0
Thhalv10004550m.g Eutrema salsugineum HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.0
Prupe.5G196000 Prunus persica HOM05D000010 ORTHO05D000302 2.2e-06 57.8 144 29.9
Sp2g24630 Schrenkiella parvula HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.0
Hund19393 Selenicereus undatus HOM05D000010 ORTHO05D000302 2.2e-06 57.8 76 38.2
TWI32G0911 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 2.2e-06 57.8 116 31.9
BcaC06g33147 Brassica carinata HOM05D000010 ORTHO05D000302 2.9e-06 57.4 160 27.5
Cfa013323 Carpinus fangiana HOM05D000010 ORTHO05D000302 2.9e-06 57.4 110 33.6
CiPaw.04G015600 Carya illinoinensis HOM05D000010 ORTHO05D000302 2.9e-06 57.4 116 31.9
Lj3A936G54 Lonicera japonica HOM05D000010 ORTHO05D000063 2.9e-06 57.4 122 32.8
Manes.05G163200 Manihot esculenta HOM05D007745 ORTHO05D009771 2.9e-06 57.4 404 24.5
Manes.06G090500 Manihot esculenta HOM05D000010 ORTHO05D000302 2.9e-06 57.4 130 30.8
QL02p007506 Quercus lobata HOM05D007745 ORTHO05D009771 2.9e-06 57.4 285 24.6
RcHm_v2.0_Chr6g0300521 Rosa chinensis HOM05D007745 ORTHO05D009771 2.9e-06 57.4 104 34.6
Hund03274 Selenicereus undatus HOM05D000010 ORTHO05D000302 2.9e-06 57.4 107 30.8
Sc03g0010210 Simmondsia chinensis HOM05D000010 ORTHO05D000302 2.9e-06 57.4 107 29.0
TPR.G36423 Trifolium pratense HOM05D000010 ORTHO05D004316 2.9e-06 57.4 135 32.6
TWI32G0961 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 2.9e-06 57.4 113 30.1
vmacro00597 Vaccinium macrocarpon HOM05D000010 ORTHO05D000302 2.9e-06 57.4 113 31.0
Atru.chr7.2674 Acer truncatum HOM05D000010 ORTHO05D000302 3.7e-06 57.0 115 29.6
BcaC03g13585 Brassica carinata HOM05D000010 ORTHO05D000302 3.7e-06 57.0 97 35.1
A02p04810 Brassica napus HOM05D000010 ORTHO05D000302 3.7e-06 57.0 97 35.1
C02p09790 Brassica napus HOM05D000010 ORTHO05D000302 3.7e-06 57.0 97 35.1
BolC2t06887H Brassica oleracea HOM05D000010 ORTHO05D000302 3.7e-06 57.0 97 35.1
BraA02t05440Z Brassica rapa HOM05D000010 ORTHO05D000302 3.7e-06 57.0 97 35.1
Cfa007745 Carpinus fangiana HOM05D000189 ORTHO05D000474 3.7e-06 57.0 132 34.1
DCAR_012752 Daucus carota HOM05D007745 ORTHO05D009771 3.7e-06 57.0 261 26.1
Duzib116G0504 Durio zibethinus HOM05D000010 ORTHO05D004316 3.7e-06 57.0 132 31.1
FvH4_2g40240 Fragaria vesca HOM05D007745 ORTHO05D009771 3.7e-06 57.0 104 32.7
Gohir.A09G186966 Gossypium hirsutum HOM05D000010 ORTHO05D000063 3.7e-06 57.0 114 34.2
MD14G1203000 Malus domestica HOM05D000010 ORTHO05D000302 3.7e-06 57.0 116 31.0
Hund13195 Selenicereus undatus HOM05D000010 ORTHO05D000302 3.7e-06 57.0 95 33.7
A10p21240 Brassica napus HOM05D000010 ORTHO05D000302 4.9e-06 56.6 130 30.8
BraA10t44188Z Brassica rapa HOM05D000010 ORTHO05D000302 4.9e-06 56.6 130 30.8
CiPaw.08G022100 Carya illinoinensis HOM05D000010 ORTHO05D000302 4.9e-06 56.6 110 31.8
DCAR_025382 Daucus carota HOM05D000010 ORTHO05D000302 4.9e-06 56.6 108 30.6
Duzib084G1190 Durio zibethinus HOM05D000010 ORTHO05D000302 4.9e-06 56.6 94 34.0
FvH4_5g14670 Fragaria vesca HOM05D000010 ORTHO05D000302 4.9e-06 56.6 114 31.6
FAN18G0371 Fragaria x ananassa HOM05D000010 ORTHO05D000302 4.9e-06 56.6 114 31.6
Lsat_1_v5_gn_1_58960 Lactuca sativa HOM05D000010 ORTHO05D000302 4.9e-06 56.6 107 31.8
Nn5g29499 Nelumbo nucifera HOM05D007745 ORTHO05D009771 4.9e-06 56.6 369 23.6
Phvul.009G104400 Phaseolus vulgaris HOM05D000010 ORTHO05D000302 4.9e-06 56.6 111 29.7
Aa31LG5G14620 Aethionema arabicum HOM05D000010 ORTHO05D000302 6.4e-06 56.2 97 35.1
AL7G50700 Arabidopsis lyrata HOM05D000010 ORTHO05D000302 6.4e-06 56.2 95 33.7
arahy.Tifrunner.gnm1.ann1.7G7SK7 Arachis hypogaea HOM05D000010 ORTHO05D000302 6.4e-06 56.2 113 29.2
C01p49390 Brassica napus HOM05D000010 ORTHO05D000302 6.4e-06 56.2 134 26.1
Cfa018439 Carpinus fangiana HOM05D007745 ORTHO05D009771 6.4e-06 56.2 312 23.4
AUR62020634 Chenopodium quinoa HOM05D000010 ORTHO05D000302 6.4e-06 56.2 111 29.7
MD06G1196100 Malus domestica HOM05D000010 ORTHO05D000302 6.4e-06 56.2 142 28.9
Hund15590 Selenicereus undatus HOM05D000010 ORTHO05D000302 6.4e-06 56.2 78 37.2
TPR.G8803 Trifolium pratense HOM05D000010 ORTHO05D000302 6.4e-06 56.2 96 32.3
TWI60G1046 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 6.4e-06 56.2 111 32.4
AL3G13970 Arabidopsis lyrata HOM05D000010 ORTHO05D000302 8.4e-06 55.8 126 33.3
BcaB04g20823 Brassica carinata HOM05D000010 ORTHO05D000063 8.4e-06 55.8 66 43.9
COL.COLO4_18616 Corchorus olitorius HOM05D000010 ORTHO05D000302 8.4e-06 55.8 78 35.9
Lalb_Chr07g0182911 Lupinus albus HOM05D000010 ORTHO05D000302 8.4e-06 55.8 139 27.3
Manes.03G002200 Manihot esculenta HOM05D000010 ORTHO05D000302 8.4e-06 55.8 101 30.7
Medtr7g011130 Medicago truncatula HOM05D000010 ORTHO05D000302 8.4e-06 55.8 98 32.7
Oeu062101.1 Olea europaea HOM05D000010 ORTHO05D000302 8.4e-06 55.8 112 31.2
PGR044G2508 Punica granatum HOM05D000010 ORTHO05D000302 8.4e-06 55.8 76 36.8
Sp3g03030 Schrenkiella parvula HOM05D000010 ORTHO05D000302 8.4e-06 55.8 118 33.1
Sc04g0002770 Simmondsia chinensis HOM05D000010 ORTHO05D000302 8.4e-06 55.8 95 31.6
PGSC0003DMG400028779 Solanum tuberosum HOM05D000010 ORTHO05D000302 8.4e-06 55.8 101 29.7


User provided reference genes

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