Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 8.5e-243 843.2 410 100.0
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.4e-223 777.7 409 93.4
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 4.3e-154 548.5 407 66.6
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 5.7e-154 548.1 406 69.0
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 8.2e-153 544.3 410 66.1
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 2.6e-151 539.3 403 66.3
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 3.4e-151 538.9 413 65.1
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.2e-150 536.2 406 64.8
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 5.0e-150 535.0 404 64.9
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 6.5e-150 534.6 404 64.9
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.4e-149 533.5 408 64.5
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.5e-149 532.7 408 64.5
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 1.2e-148 530.4 408 63.2
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 3.5e-148 528.9 412 64.3
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 4.6e-148 528.5 403 64.3
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 4.6e-148 528.5 406 64.3
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 7.9e-148 527.7 406 62.8
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.0e-147 527.3 406 64.0
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 2.3e-147 526.2 407 64.4
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 3.0e-147 525.8 407 62.9
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 6.7e-147 524.6 402 64.9
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 3.3e-146 522.3 405 62.7
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 9.7e-146 520.8 403 64.3
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 9.7e-146 520.8 412 63.6
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.6e-145 520.0 405 62.7
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.8e-145 519.2 405 63.0
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.8e-145 518.5 406 62.6
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 6.3e-145 518.1 403 63.0
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 8.2e-145 517.7 405 63.0
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.4e-144 516.9 406 64.0
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 1.8e-144 516.5 408 64.0
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 2.4e-144 516.2 409 63.3
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 3.1e-144 515.8 411 62.8
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 5.3e-144 515.0 412 61.4
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 6.9e-144 514.6 410 60.7
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.2e-143 513.8 405 61.7
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.4e-143 512.3 407 63.4
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 7.7e-143 511.1 411 62.8
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 2.2e-142 509.6 408 62.0
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 5.0e-142 508.4 405 61.7
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.5e-142 508.1 405 62.0
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.4e-141 506.9 376 66.0
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 2.5e-141 506.1 407 61.9
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.5e-141 506.1 408 61.3
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 3.2e-141 505.8 404 60.9
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 3.2e-141 505.8 426 60.8
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 4.2e-141 505.4 410 62.7
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 2.1e-140 503.1 405 61.2
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 3.6e-140 502.3 405 63.0
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 4.6e-140 501.9 406 62.6
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 7.9e-140 501.1 414 63.5
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.4e-139 500.4 408 61.3
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.4e-139 500.4 408 63.2
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 1.4e-139 500.4 405 62.7
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 2.3e-139 499.6 409 60.9
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.3e-139 499.6 407 61.9
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 3.9e-139 498.8 411 60.8
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 3.9e-139 498.8 411 60.8
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 5.1e-139 498.4 412 60.9
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 5.1e-139 498.4 415 61.9
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 6.7e-139 498.0 411 60.8
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 8.8e-139 497.7 408 60.8
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 8.8e-139 497.7 405 62.2
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.1e-138 497.3 412 60.7
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.5e-138 496.9 406 62.6
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.5e-138 496.9 405 62.5
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.5e-138 496.1 414 59.7
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 2.5e-138 496.1 407 60.7
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 5.7e-138 495.0 406 62.1
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 7.4e-138 494.6 435 58.9
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 9.7e-138 494.2 406 60.6
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.3e-137 493.8 405 60.0
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.8e-137 492.7 406 60.3
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 4.8e-137 491.9 413 59.8
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 4.8e-137 491.9 408 60.8
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 6.3e-137 491.5 408 61.8
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 4.1e-136 488.8 406 60.6
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.1e-136 488.8 407 60.4
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 5.3e-136 488.4 405 60.2
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 5.3e-136 488.4 406 61.3
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 5.3e-136 488.4 406 61.3
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 6.9e-136 488.0 406 61.3
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.5e-135 486.9 405 60.7
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.5e-135 486.9 406 60.3
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.5e-135 486.9 419 60.9
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.6e-135 486.1 408 60.8
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 3.4e-135 485.7 406 60.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 4.5e-135 485.3 406 60.8
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 5.9e-135 485.0 406 60.8
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 7.7e-135 484.6 403 59.6
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 8.5e-134 481.1 418 60.3
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 1.9e-133 479.9 407 60.9
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 5.5e-133 478.4 413 57.6
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 7.2e-133 478.0 410 59.8
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 1.6e-132 476.9 406 60.6
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 1.6e-132 476.9 404 58.2
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 2.7e-132 476.1 406 60.1
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 4.7e-132 475.3 406 59.6
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 7.9e-132 474.6 406 60.8
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 1.4e-131 473.8 406 59.4
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.1e-131 471.9 406 57.6
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.1e-131 471.9 406 57.6
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 6.7e-131 471.5 419 58.7
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 6.7e-131 471.5 401 59.4
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 6.7e-131 471.5 435 57.0
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 8.8e-131 471.1 406 57.4
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.5e-130 470.3 406 57.4
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 2.6e-130 469.5 409 57.2
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 2.6e-130 469.5 406 59.4
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 4.4e-130 468.8 406 59.1
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 4.4e-130 468.8 406 57.1
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 9.7e-130 467.6 421 58.2
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.2e-129 466.5 406 57.1
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.8e-129 466.1 418 58.6
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.7e-129 465.7 411 58.4
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.7e-129 465.7 418 57.9
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 4.8e-129 465.3 415 58.3
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 8.2e-129 464.5 419 57.5
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 7.0e-128 461.5 423 57.2
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 9.1e-128 461.1 418 58.6
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 2.0e-127 459.9 382 61.5
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 4.5e-127 458.8 410 55.6
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 2.9e-126 456.1 413 58.4
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 3.8e-126 455.7 407 59.2
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 2.5e-125 453.0 415 57.1
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 3.2e-125 452.6 405 57.8
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 6.1e-124 448.4 444 55.0
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.0e-123 446.0 418 56.2
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 8.8e-123 444.5 408 54.9
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 4.8e-121 438.7 447 53.5
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 1.4e-120 437.2 413 53.8
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.8e-120 436.8 407 55.0
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 5.9e-119 431.8 355 61.1
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 3.8e-118 429.1 411 55.7
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 2.6e-114 416.4 323 65.9
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 1.7e-113 413.7 443 51.0
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 3.7e-113 412.5 414 53.6
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 4.1e-112 409.1 416 54.3
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 5.0e-110 402.1 403 52.1
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.2e-106 391.0 401 52.9
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 4.4e-106 389.0 417 50.4
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.2e-103 380.9 400 51.8
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 2.0e-103 380.2 415 48.9
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 1.0e-102 377.9 421 46.8
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 3.8e-102 375.9 418 46.9
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.9e-101 373.6 422 50.2
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 5.5e-101 372.1 298 61.4
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 1.6e-95 354.0 411 49.4
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 5.0e-94 349.0 308 57.8
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 5.2e-91 339.0 326 51.5
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.9e-88 330.5 433 42.5
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 4.1e-88 329.3 430 43.0
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 3.3e-85 319.7 265 61.1
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 3.1e-83 313.2 446 39.7
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 8.3e-81 305.1 421 41.8
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.9e-80 303.9 209 67.5
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 1.3e-62 244.6 159 72.3
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 2.8e-60 236.9 256 52.7
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 7.1e-48 195.7 203 53.7
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 7.9e-47 192.2 119 75.6
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.3e-46 190.7 204 51.5
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.1e-40 171.8 379 30.6
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 6.0e-39 166.0 207 47.8
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.5e-37 160.6 109 71.6
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 4.2e-32 143.3 102 66.7
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.2e-31 141.7 370 30.5
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.0e-30 138.7 388 28.4
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 7.4e-29 132.5 379 26.4
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.1e-23 114.4 205 36.6
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 5.7e-21 106.3 94 57.4
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 1.5e-08 65.1 109 41.3
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.5e-08 65.1 90 43.3
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 4.7e-07 60.1 197 22.3
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 6.1e-07 59.7 125 26.4
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 6.1e-07 59.7 125 27.2
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 1.0e-06 58.9 168 22.0
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 2.3e-06 57.8 123 26.8
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 2.3e-06 57.8 166 22.3
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 4.0e-06 57.0 166 22.9
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 4.0e-06 57.0 125 26.4
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 6.7e-06 56.2 121 24.8
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 8.8e-06 55.8 121 26.4
Gohir.A05G075300 Gossypium hirsutum HOM05D006479 ORTHO05D008310 8.8e-06 55.8 121 32.2


User provided reference genes

Program Settings