Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G2152 Ceratophyllum demersum HOM05D004736 ORTHO05D006424 1.3e-140 503.1 260 100.0
Gorai.002G229900 Gossypium raimondii HOM05D004736 ORTHO05D006424 7.5e-120 434.1 293 78.2
CDE07G0848 Ceratophyllum demersum HOM05D004736 ORTHO05D006424 1.4e-118 429.9 280 83.9
TAR628G0315 Trochodendron aralioides HOM05D004736 ORTHO05D006424 7.8e-117 424.1 281 79.7
FAN05G2919 Fragaria x ananassa HOM05D004736 ORTHO05D006424 6.6e-116 421.0 281 80.1
RcHm_v2.0_Chr3g0481011 Rosa chinensis HOM05D004736 ORTHO05D006424 6.6e-116 421.0 281 80.1
FvH4_6g23200 Fragaria vesca HOM05D004736 ORTHO05D006424 1.1e-115 420.2 279 80.3
Prupe.7G067800 Prunus persica HOM05D004736 ORTHO05D006424 1.5e-115 419.9 281 80.1
Aqoxy2G02127 Aquilegia oxysepala HOM05D004736 ORTHO05D006424 1.9e-115 419.5 284 79.6
Potri.016G052800 Populus trichocarpa HOM05D004736 ORTHO05D006424 1.9e-115 419.5 281 80.1
Dinv24126 Davidia involucrata HOM05D004736 ORTHO05D006424 5.6e-115 417.9 278 80.6
Phvul.006G173700 Phaseolus vulgaris HOM05D004736 ORTHO05D006424 1.6e-114 416.4 281 79.4
VMungo0540G2280 Vigna mungo HOM05D004736 ORTHO05D006424 1.6e-114 416.4 281 79.4
Cfa016861 Carpinus fangiana HOM05D004736 ORTHO05D006424 2.1e-114 416.0 280 80.0
Cc06_g16570 Coffea canephora HOM05D004736 ORTHO05D006424 3.6e-114 415.2 278 80.2
Glyma.15G085200 Glycine max HOM05D004736 ORTHO05D006424 4.7e-114 414.8 281 79.0
Lj6g0012418 Lotus japonicus HOM05D004736 ORTHO05D006424 4.7e-114 414.8 281 79.0
TWI36G0105 Tripterygium wilfordii HOM05D004736 ORTHO05D006424 4.7e-114 414.8 279 79.6
Dinv17005 Davidia involucrata HOM05D004736 ORTHO05D006424 6.2e-114 414.5 281 79.4
Glyma.13G227200 Glycine max HOM05D004736 ORTHO05D006424 6.2e-114 414.5 281 79.0
FAN14G3352 Fragaria x ananassa HOM05D004736 ORTHO05D006424 8.1e-114 414.1 284 78.9
MD14G1066600 Malus domestica HOM05D004736 ORTHO05D006424 8.1e-114 414.1 281 77.9
Ciclev10005464m.g Citrus clementina HOM05D004736 ORTHO05D006424 1.4e-113 413.3 281 79.4
Lalb_Chr18g0054721 Lupinus albus HOM05D004736 ORTHO05D006424 1.4e-113 413.3 281 79.0
Ca_00461_v3 Cicer arietinum L. HOM05D004736 ORTHO05D006424 2.3e-113 412.5 281 78.6
Psat1g195560 Pisum sativum HOM05D004736 ORTHO05D006424 3.1e-113 412.1 284 77.5
CiPaw.10G031000 Carya illinoinensis HOM05D004736 ORTHO05D006424 5.2e-113 411.4 284 78.9
Sabra16G0056000 Salix brachista HOM05D004736 ORTHO05D006424 5.2e-113 411.4 291 77.3
Medtr2g016690 Medicago truncatula HOM05D004736 ORTHO05D006424 6.8e-113 411.0 276 79.3
CSS0036113 Camellia sinensis var. sinensis HOM05D004736 ORTHO05D006424 1.2e-112 410.2 278 79.5
ECA247G3948 Erigeron canadensis HOM05D004736 ORTHO05D006424 1.2e-112 410.2 278 79.5
MD12G1066500 Malus domestica HOM05D004736 ORTHO05D006424 1.2e-112 410.2 282 78.4
DCAR_016999 Daucus carota HOM05D004736 ORTHO05D006424 1.5e-112 409.8 277 79.4
Cpa.g.sc92.4 Carica papaya HOM05D004736 ORTHO05D006424 2.0e-112 409.5 278 78.1
Lalb_Chr20g0117571 Lupinus albus HOM05D004736 ORTHO05D006424 2.0e-112 409.5 279 78.1
HanXRQChr16g0517691 Helianthus annuus HOM05D004736 ORTHO05D006424 3.4e-112 408.7 278 79.1
Lj1A1176G54 Lonicera japonica HOM05D004736 ORTHO05D006424 5.8e-112 407.9 281 79.4
TPR.G4590 Trifolium pratense HOM05D004736 ORTHO05D006424 5.8e-112 407.9 277 78.3
arahy.Tifrunner.gnm1.ann1.K7PES2 Arachis hypogaea HOM05D004736 ORTHO05D006424 1.3e-111 406.8 282 78.0
Eucgr.A02398 Eucalyptus grandis HOM05D004736 ORTHO05D006424 1.9e-110 402.9 281 77.6
Peaxi162Scf00189g00319 Petunia axillaris HOM05D004736 ORTHO05D006424 5.4e-110 401.4 278 76.6
Solyc03g059310.3 Solanum lycopersicum HOM05D004736 ORTHO05D006424 2.7e-109 399.1 278 76.6
Sopen03g013810 Solanum pennellii HOM05D004736 ORTHO05D006424 3.5e-109 398.7 278 76.3
Thecc.05G162800 Theobroma cacao HOM05D004736 ORTHO05D006424 6.0e-109 397.9 279 77.4
CSS0019519 Camellia sinensis var. sinensis HOM05D004736 ORTHO05D006424 7.8e-109 397.5 279 78.1
PSO151G0150 Papaver somniferum HOM05D004736 ORTHO05D006424 1.0e-108 397.1 283 74.9
arahy.Tifrunner.gnm1.ann1.0PUU86 Arachis hypogaea HOM05D004736 ORTHO05D006424 3.9e-108 395.2 275 77.5
PSO339G4417 Papaver somniferum HOM05D004736 ORTHO05D006424 6.6e-108 394.4 283 74.6
Actinidia38567 Actinidia chinensis HOM05D004736 ORTHO05D006424 1.9e-107 392.9 277 76.2
Gohir.A01G196200 Gossypium hirsutum HOM05D004736 ORTHO05D006424 1.9e-107 392.9 281 76.2
Gohir.D01G186500 Gossypium hirsutum HOM05D004736 ORTHO05D006424 1.9e-107 392.9 281 76.2
Hma1.2p1_0418F.1_g149210 Hydrangea macrophylla HOM05D004736 ORTHO05D006424 3.3e-107 392.1 281 75.8
COL.COLO4_28679 Corchorus olitorius HOM05D004736 ORTHO05D006424 5.6e-107 391.3 281 76.2
Sed0000735 Sechium edule HOM05D004736 ORTHO05D006424 5.6e-107 391.3 279 75.3
ClCG10G017240 Citrullus lanatus HOM05D004736 ORTHO05D006424 7.3e-107 391.0 278 69.8
Haze_19912 Corylus avellana HOM05D004736 ORTHO05D006424 7.3e-107 391.0 280 76.8
ATR0559G151 Amborella trichopoda HOM05D004736 ORTHO05D006424 9.6e-107 390.6 281 76.2
GSVIVG01033328001 Vitis vinifera HOM05D004736 ORTHO05D006424 1.6e-106 389.8 278 75.9
Lsat_1_v5_gn_1_13520 Lactuca sativa HOM05D004736 ORTHO05D006424 2.8e-106 389.0 278 70.9
QL07p021737 Quercus lobata HOM05D004736 ORTHO05D006424 4.7e-106 388.3 277 76.9
Nn4g25079 Nelumbo nucifera HOM05D004736 ORTHO05D006424 6.2e-106 387.9 273 77.7
Lj8A7T16 Lonicera japonica HOM05D004736 ORTHO05D006424 1.8e-105 386.3 278 76.6
Duzib093G0982 Durio zibethinus HOM05D004736 ORTHO05D006424 4.0e-105 385.2 277 75.8
Hund24745 Selenicereus undatus HOM05D004736 ORTHO05D006424 5.2e-105 384.8 279 73.8
Os03g0681700 Oryza sativa ssp. japonica HOM05D004736 ORTHO05D006424 2.0e-104 382.9 280 74.3
FAN02G0078 Fragaria x ananassa HOM05D004736 ORTHO05D006424 2.6e-104 382.5 218 90.8
SEGI_13063 Sequoiadendron giganteum HOM05D004736 ORTHO05D006424 2.6e-104 382.5 277 75.5
SalBow1G5652 Salvia bowleyana HOM05D004736 ORTHO05D006424 4.4e-104 381.7 278 75.5
PSO339G3699 Papaver somniferum HOM05D004736 ORTHO05D006424 7.6e-104 380.9 281 75.1
SHI12817 Sapria himalayana HOM05D004736 ORTHO05D006424 7.6e-104 380.9 277 74.0
Nitab4.5_0004538g0010 Nicotiana tabacum HOM05D004736 ORTHO05D006424 2.9e-103 379.0 265 76.6
Oeu018009.1 Olea europaea HOM05D004736 ORTHO05D006424 8.4e-103 377.5 278 74.8
Oeu064319.1 Olea europaea HOM05D004736 ORTHO05D006424 1.4e-102 376.7 275 74.5
SGA_v2.0_scaffold94G28453 Striga asiatica HOM05D004736 ORTHO05D006424 3.2e-102 375.6 278 74.8
Sc13g0001970 Simmondsia chinensis HOM05D004736 ORTHO05D006424 5.4e-102 374.8 307 68.4
FAN09G0911 Fragaria x ananassa HOM05D004736 ORTHO05D006424 7.1e-102 374.4 286 66.4
MSTRG.6450 Avicennia marina HOM05D004736 ORTHO05D006424 9.3e-102 374.0 281 73.7
AUR62024392 Chenopodium quinoa HOM05D004736 ORTHO05D006424 1.6e-101 373.2 289 72.0
Atru.chr1.1029 Acer truncatum HOM05D004736 ORTHO05D006424 2.1e-101 372.9 217 89.9
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 2.7e-101 372.5 217 88.9
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 2.7e-101 372.5 217 88.9
Ah.04g151930 Amaranthus hybridus HOM05D004736 ORTHO05D006424 4.6e-101 371.7 277 74.0
Migut.K00069 Erythranthe guttata HOM05D004736 ORTHO05D006424 1.3e-100 370.2 217 88.5
SGA_v2.0_scaffold62G21541 Striga asiatica HOM05D004736 ORTHO05D006424 1.3e-100 370.2 278 73.0
Duzib106G0765 Durio zibethinus HOM05D004736 ORTHO05D006424 1.1e-99 367.1 245 80.0
unitig_26.g9041 Utricularia gibba HOM05D004736 ORTHO05D006424 1.1e-99 367.1 278 71.2
SMO236G0112 Selaginella moellendorffii HOM05D004736 ORTHO05D006424 1.5e-99 366.7 276 71.7
HPP92_003386 Vanilla planifolia HOM05D004736 ORTHO05D006424 7.3e-99 364.4 278 72.7
HPP92_003388 Vanilla planifolia HOM05D004736 ORTHO05D006424 7.3e-99 364.4 278 72.7
Pp3c11_25160 Physcomitrium patens HOM05D004736 ORTHO05D006424 1.6e-98 363.2 278 70.9
GSVIVG01024957001 Vitis vinifera HOM05D004736 ORTHO05D006424 8.1e-98 360.9 216 86.6
Mapoly0012s0149 Marchantia polymorpha HOM05D004736 ORTHO05D006424 1.2e-96 357.1 281 67.6
PGR031G2657 Punica granatum HOM05D004736 ORTHO05D006424 2.2e-95 352.8 218 84.9
Rhsim04G0099500 Rhododendron simsii HOM05D004736 ORTHO05D006424 2.2e-95 352.8 278 65.8
THA.LOC104820361 Tarenaya hassleriana HOM05D004736 ORTHO05D006424 2.7e-93 345.9 216 86.1
Thhalv10021207m.g Eutrema salsugineum HOM05D004736 ORTHO05D006424 6.0e-93 344.7 269 71.4
vmacro09094 Vaccinium macrocarpon HOM05D004736 ORTHO05D006424 1.8e-92 343.2 247 76.5
AL3G31290 Arabidopsis lyrata HOM05D004736 ORTHO05D006424 3.0e-92 342.4 272 70.6
Carub.0003s1786 Capsella rubella HOM05D004736 ORTHO05D006424 3.0e-92 342.4 272 70.6
CARHR093440 Cardamine hirsuta HOM05D004736 ORTHO05D006424 8.7e-92 340.9 272 70.2
C05p48040 Brassica napus HOM05D004736 ORTHO05D006424 1.1e-91 340.5 272 70.6
AT3G18140 Arabidopsis thaliana HOM05D004736 ORTHO05D006424 1.9e-91 339.7 272 70.2
A05p31660 Brassica napus HOM05D004736 ORTHO05D006424 1.9e-91 339.7 272 70.2
Sp3g16250 Schrenkiella parvula HOM05D004736 ORTHO05D006424 5.6e-91 338.2 272 69.9
BcaC05g28666 Brassica carinata HOM05D004736 ORTHO05D006424 2.8e-90 335.9 272 69.9
PSO384G0718 Papaver somniferum HOM05D004736 ORTHO05D006424 8.1e-90 334.3 238 78.6
Aa31LG8G4970 Aethionema arabicum HOM05D002288 ORTHO05D002894 1.4e-86 323.6 216 76.4
EL10Ac3g07012 Beta vulgaris HOM05D004736 ORTHO05D006424 2.7e-85 319.3 201 83.6
Nitab4.5_0008117g0050 Nicotiana tabacum HOM05D004736 ORTHO05D006424 2.3e-84 316.2 217 78.8
CARHR113170 Cardamine hirsuta HOM05D004736 ORTHO05D006424 1.5e-83 313.5 274 63.9
AUR62025989 Chenopodium quinoa HOM05D004736 ORTHO05D006424 2.5e-83 312.8 194 84.5
Manes.05G190600 Manihot esculenta HOM05D004736 ORTHO05D006424 2.5e-83 312.8 187 89.3
AagrBONN_evm.TU.Sc2ySwM_228.1939 Anthoceros agrestis HOM05D004736 ORTHO05D006424 4.6e-77 292.0 275 61.1
Haze_19845 Corylus avellana HOM05D004736 ORTHO05D006424 1.9e-75 286.6 215 74.9
AL4G11350 Arabidopsis lyrata HOM05D004736 ORTHO05D006424 9.7e-75 284.3 217 73.3
Carub.0004s0119 Capsella rubella HOM05D004736 ORTHO05D006424 8.2e-74 281.2 274 61.3
MCO14G383 Micromonas commoda HOM05D004736 ORTHO05D006424 7.6e-72 274.6 217 68.7
Cre17.g713900 Chlamydomonas reinhardtii HOM05D004736 ORTHO05D006424 1.3e-71 273.9 217 67.3
MELO3C009659.2 Cucumis melo HOM05D004736 ORTHO05D006424 2.2e-71 273.1 229 62.4
AT2G22040 Arabidopsis thaliana HOM05D004736 ORTHO05D006424 3.8e-71 272.3 217 71.0
Sp4g01080 Schrenkiella parvula HOM05D004736 ORTHO05D006424 5.5e-70 268.5 293 54.6
PRCOL_00005554 Prasinoderma coloniale HOM05D004736 ORTHO05D006424 2.2e-66 256.5 238 61.8
BolC5t33511H Brassica oleracea HOM05D004736 ORTHO05D006424 4.8e-66 255.4 274 59.1
BcaC07g41105 Brassica carinata HOM05D004736 ORTHO05D006424 2.2e-63 246.5 227 55.5
BcaC07g41100 Brassica carinata HOM05D004736 ORTHO05D006424 1.1e-62 244.2 227 55.9
CBR_g49895 Chara braunii HOM05D004736 ORTHO05D006424 3.2e-62 242.7 170 79.4
C08p41070 Brassica napus HOM05D004736 ORTHO05D006424 4.2e-62 242.3 227 55.1
BolC8t51671H Brassica oleracea HOM05D004736 ORTHO05D006424 4.2e-62 242.3 227 55.1
A09p57830 Brassica napus HOM05D004736 ORTHO05D006424 1.2e-61 240.7 227 55.1
Thhalv10000630m.g Eutrema salsugineum HOM05D004736 ORTHO05D006424 3.9e-60 235.7 223 56.5
BraA09t41176Z Brassica rapa HOM05D004736 ORTHO05D006424 5.1e-60 235.3 230 53.9
Zm00001eb114830 Zea mays HOM05D004736 ORTHO05D006424 8.8e-60 234.6 206 60.7
BraA05t21999Z Brassica rapa HOM05D004736 ORTHO05D006424 5.5e-54 215.3 272 46.3
BcaB08g35029 Brassica carinata HOM05D004736 ORTHO05D006424 1.1e-51 207.6 226 50.9
Cfa022040 Carpinus fangiana HOM05D004736 ORTHO05D006424 1.3e-50 204.1 234 44.0
AagrBONN_evm.TU.Sc2ySwM_228.1924 Anthoceros agrestis HOM05D004736 ORTHO05D006424 2.0e-43 180.3 99 83.8
BcaC07g41104 Brassica carinata HOM05D004736 ORTHO05D006424 5.0e-39 165.6 226 45.6
BcaC07g41101 Brassica carinata HOM05D004736 ORTHO05D006424 5.4e-33 145.6 233 41.6
PSO832G1575 Papaver somniferum HOM05D004736 ORTHO05D030424 2.9e-23 113.2 68 80.9
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 8.6e-23 111.7 64 82.8
Duzib128G1746 Durio zibethinus HOM05D004736 ORTHO05D006424 1.1e-22 111.3 130 50.0
PSO541G6250 Papaver somniferum HOM05D004736 ORTHO05D030424 6.8e-20 102.1 106 53.8
Lsat_1_v5_gn_4_59001 Lactuca sativa HOM05D004736 ORTHO05D006424 4.6e-16 89.4 57 70.2
Lsat_1_v5_gn_5_97320 Lactuca sativa HOM05D004736 ORTHO05D006424 5.6e-14 82.4 93 48.4
EL10Ac3g07013 Beta vulgaris HOM05D004736 ORTHO05D006424 4.4e-11 72.8 88 50.0
TPR.G20938 Trifolium pratense HOM05D004736 ORTHO05D030424 4.4e-11 72.8 36 83.3
Lsat_1_v5_gn_2_37301 Lactuca sativa HOM05D004736 ORTHO05D006424 4.9e-10 69.3 99 39.4
Lsat_1_v5_gn_6_12661 Lactuca sativa HOM05D004736 ORTHO05D011576 4.9e-10 69.3 99 39.4
Lsat_1_v5_gn_8_137581 Lactuca sativa HOM05D004736 ORTHO05D011576 1.4e-09 67.8 99 38.4
Lsat_1_v5_gn_3_125721 Lactuca sativa HOM05D004736 ORTHO05D006424 5.4e-09 65.9 46 71.7
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 7.0e-09 65.5 233 24.0
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 7.0e-09 65.5 231 23.8
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 2.1e-08 63.9 232 24.1
Medtr7g055590 Medicago truncatula HOM05D000526 ORTHO05D000956 2.7e-08 63.5 212 23.6
Medtr7g057540 Medicago truncatula HOM05D000526 ORTHO05D000956 2.7e-08 63.5 212 23.6
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 7.8e-08 62.0 230 21.7
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 8.6e-07 58.5 228 22.4
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 1.5e-06 57.8 65 36.9
Phvul.004G080000 Phaseolus vulgaris HOM05D000526 ORTHO05D000956 1.5e-06 57.8 186 23.7
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 1.5e-06 57.8 218 22.0
TPR.G34449 Trifolium pratense HOM05D000526 ORTHO05D000956 1.9e-06 57.4 186 24.2
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 2.5e-06 57.0 65 38.5
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 3.3e-06 56.6 229 21.8
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 3.3e-06 56.6 65 36.9
Ah.05g175900 Amaranthus hybridus HOM05D001335 ORTHO05D001184 4.3e-06 56.2 222 20.3
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 4.3e-06 56.2 120 32.5
CARHR286400 Cardamine hirsuta HOM05D000526 ORTHO05D000956 4.3e-06 56.2 181 25.4
Lsat_1_v5_gn_4_12620 Lactuca sativa HOM05D004736 ORTHO05D230337 4.3e-06 56.2 27 88.9
Lsat_1_v5_gn_6_107640 Lactuca sativa HOM05D004736 ORTHO05D011576 4.3e-06 56.2 27 88.9
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 4.3e-06 56.2 65 36.9
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 4.3e-06 56.2 237 21.5
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 7.3e-06 55.5 66 39.4
Lsat_1_v5_gn_7_46360 Lactuca sativa HOM05D004736 ORTHO05D231097 7.3e-06 55.5 113 36.3
Sed0006740 Sechium edule HOM05D000836 ORTHO05D000709 7.3e-06 55.5 144 24.3
Ah.05g175920 Amaranthus hybridus HOM05D001335 ORTHO05D001184 9.5e-06 55.1 235 20.9
AT5G27570 Arabidopsis thaliana HOM05D000526 ORTHO05D000956 9.5e-06 55.1 198 24.2
Hma1.2p1_1375F.1_g279040 Hydrangea macrophylla HOM05D003825 ORTHO05D004491 9.5e-06 55.1 200 25.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 9.5e-06 55.1 65 35.4


User provided reference genes

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