Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1758 Ceratophyllum demersum HOM05D002718 ORTHO05D003269 3.1e-44 181.4 92 100.0
Cpa.g.sc148.1 Carica papaya HOM05D002718 ORTHO05D003269 8.6e-10 67.0 92 53.3
CiPaw.07G209700 Carya illinoinensis HOM05D002718 ORTHO05D003269 3.3e-09 65.1 72 61.1
ATR0626G149 Amborella trichopoda HOM05D002718 ORTHO05D003269 5.6e-09 64.3 83 54.2
ClCG10G008570 Citrullus lanatus HOM05D002718 ORTHO05D003269 5.6e-09 64.3 77 54.5
Haze_19055 Corylus avellana HOM05D002718 ORTHO05D003269 5.6e-09 64.3 72 59.7
arahy.Tifrunner.gnm1.ann1.YWBJ1A Arachis hypogaea HOM05D002718 ORTHO05D003269 7.3e-09 63.9 92 51.1
QL12p025880 Quercus lobata HOM05D002718 ORTHO05D003269 9.5e-09 63.5 72 59.7
arahy.Tifrunner.gnm1.ann1.NA6C8E Arachis hypogaea HOM05D002718 ORTHO05D003269 1.2e-08 63.2 92 51.1
Ciclev10007339m.g Citrus clementina HOM05D002718 ORTHO05D003269 1.2e-08 63.2 72 59.7
MBI16_g37213_MAGBIO Magnolia biondii HOM05D002718 ORTHO05D003269 1.2e-08 63.2 83 53.0
Cfa013311 Carpinus fangiana HOM05D002718 ORTHO05D003269 1.6e-08 62.8 72 58.3
Haze_21795 Corylus avellana HOM05D002718 ORTHO05D003269 1.6e-08 62.8 72 58.3
THA.LOC104820278 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 1.6e-08 62.8 72 59.7
CiPaw.08G021400 Carya illinoinensis HOM05D002718 ORTHO05D003269 2.1e-08 62.4 72 56.9
ClCG05G026320 Citrullus lanatus HOM05D002718 ORTHO05D003269 2.1e-08 62.4 73 57.5
Dinv38809 Davidia involucrata HOM05D002718 ORTHO05D003269 2.1e-08 62.4 72 59.7
TAR383G0086 Trochodendron aralioides HOM05D002718 ORTHO05D003269 2.1e-08 62.4 72 59.7
CANSAT35G0611 Cannabis sativa HOM05D002718 ORTHO05D003269 2.8e-08 62.0 77 54.5
MELO3C003601.2 Cucumis melo HOM05D002718 ORTHO05D003269 2.8e-08 62.0 72 54.2
CsaV3_4G009070 Cucumis sativus L. HOM05D002718 ORTHO05D003269 2.8e-08 62.0 72 59.7
Dinv37495 Davidia involucrata HOM05D002718 ORTHO05D003269 2.8e-08 62.0 69 59.4
Os02g0141300 Oryza sativa ssp. japonica HOM05D002718 ORTHO05D003269 2.8e-08 62.0 83 53.0
Sed0009215 Sechium edule HOM05D002718 ORTHO05D003269 2.8e-08 62.0 72 59.7
SEGI_20112 Sequoiadendron giganteum HOM05D002718 ORTHO05D003269 2.8e-08 62.0 69 62.3
THA.LOC104802597 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 2.8e-08 62.0 72 59.7
EL10Ac2g03697 Beta vulgaris HOM05D002718 ORTHO05D003269 3.6e-08 61.6 69 62.3
CANSAT25G2302 Cannabis sativa HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 59.7
Ca_12844_v3 Cicer arietinum L. HOM05D002718 ORTHO05D003269 3.6e-08 61.6 73 56.2
Eucgr.C02132 Eucalyptus grandis HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 58.3
FvH4_2g36460 Fragaria vesca HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 59.7
FAN15G0923 Fragaria x ananassa HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 59.7
FAN20G1933 Fragaria x ananassa HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 59.7
FAN27G0986 Fragaria x ananassa HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 59.7
Glyma.17G194400 Glycine max HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 58.3
Lj7C753T13 Lonicera japonica HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 55.6
Medtr1g009190 Medicago truncatula HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 58.3
Nn8g41097 Nelumbo nucifera HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 59.7
PGR084G0004 Punica granatum HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 59.7
PGR142G1783 Punica granatum HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 59.7
RcHm_v2.0_Chr6g0305421 Rosa chinensis HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 59.7
SHI02366 Sapria himalayana HOM05D002718 ORTHO05D003269 3.6e-08 61.6 70 57.1
TPR.G12004 Trifolium pratense HOM05D002718 ORTHO05D003269 3.6e-08 61.6 73 56.2
TWI32G0829 Tripterygium wilfordii HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 58.3
unitig_32.g11648 Utricularia gibba HOM05D002718 ORTHO05D003269 3.6e-08 61.6 69 56.5
GSVIVG01035565001 Vitis vinifera HOM05D002718 ORTHO05D003269 3.6e-08 61.6 72 59.7
Zm00001eb208110 Zea mays HOM05D002718 ORTHO05D003269 3.6e-08 61.6 69 60.9
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 4.7e-08 61.2 69 60.9
MSTRG.10465 Avicennia marina HOM05D002718 ORTHO05D003269 4.7e-08 61.2 72 58.3
CAN.G480.17 Capsicum annuum HOM05D002718 ORTHO05D003269 4.7e-08 61.2 72 59.7
CAN.G600.6 Capsicum annuum HOM05D002718 ORTHO05D003269 4.7e-08 61.2 77 53.2
AUR62038736 Chenopodium quinoa HOM05D002718 ORTHO05D003269 4.7e-08 61.2 69 60.9
Migut.A00453 Erythranthe guttata HOM05D002718 ORTHO05D003269 4.7e-08 61.2 75 56.0
Nitab4.5_0000970g0150 Nicotiana tabacum HOM05D002718 ORTHO05D003269 4.7e-08 61.2 72 59.7
Nitab4.5_0001535g0050 Nicotiana tabacum HOM05D002718 ORTHO05D003269 4.7e-08 61.2 77 54.5
Peaxi162Scf00213g00943 Petunia axillaris HOM05D002718 ORTHO05D003269 4.7e-08 61.2 72 59.7
Solyc08g069231.1 Solanum lycopersicum HOM05D002718 ORTHO05D003269 4.7e-08 61.2 72 59.7
Sopen08g022860 Solanum pennellii HOM05D002718 ORTHO05D003269 4.7e-08 61.2 72 59.7
Aa31LG10G6050 Aethionema arabicum HOM05D002718 ORTHO05D003269 6.1e-08 60.8 79 51.9
CARHR222420 Cardamine hirsuta HOM05D002718 ORTHO05D003269 6.1e-08 60.8 76 53.9
Cc11_g03230 Coffea canephora HOM05D002718 ORTHO05D003269 6.1e-08 60.8 72 56.9
MELO3C018969.2 Cucumis melo HOM05D002718 ORTHO05D003269 6.1e-08 60.8 72 58.3
CsaV3_3G047280 Cucumis sativus L. HOM05D002718 ORTHO05D003269 6.1e-08 60.8 69 55.1
Thhalv10024313m.g Eutrema salsugineum HOM05D002718 ORTHO05D003269 6.1e-08 60.8 76 53.9
Nitab4.5_0000899g0120 Nicotiana tabacum HOM05D002718 ORTHO05D003269 6.1e-08 60.8 77 53.2
Oeu059291.2 Olea europaea HOM05D002718 ORTHO05D003269 6.1e-08 60.8 72 58.3
Potri.018G003100 Populus trichocarpa HOM05D002718 ORTHO05D003269 6.1e-08 60.8 77 53.2
Sabra18G0002900 Salix brachista HOM05D002718 ORTHO05D003269 6.1e-08 60.8 77 53.2
Sabra18G0006300 Salix brachista HOM05D002718 ORTHO05D003269 6.1e-08 60.8 77 53.2
Sabra18G0006600 Salix brachista HOM05D002718 ORTHO05D003269 6.1e-08 60.8 77 53.2
Sabra18G0008300 Salix brachista HOM05D002718 ORTHO05D003269 6.1e-08 60.8 77 53.2
Sabra18G0008500 Salix brachista HOM05D002718 ORTHO05D003269 6.1e-08 60.8 77 53.2
Sabra18G0009800 Salix brachista HOM05D002718 ORTHO05D003269 6.1e-08 60.8 77 53.2
Sabra18G0016400 Salix brachista HOM05D002718 ORTHO05D003269 6.1e-08 60.8 77 53.2
MSTRG.25768 Avicennia marina HOM05D002718 ORTHO05D003269 8.0e-08 60.5 72 59.7
DCAR_004565 Daucus carota HOM05D002718 ORTHO05D003269 8.0e-08 60.5 69 56.5
Glyma.14G138300 Glycine max HOM05D002718 ORTHO05D003269 8.0e-08 60.5 69 58.0
Hma1.2p1_0331F.1_g127520 Hydrangea macrophylla HOM05D002718 ORTHO05D003269 8.0e-08 60.5 72 58.3
Lsat_1_v5_gn_3_26460 Lactuca sativa HOM05D002718 ORTHO05D003269 8.0e-08 60.5 72 56.9
Manes.16G137600 Manihot esculenta HOM05D002718 ORTHO05D003269 8.0e-08 60.5 78 52.6
Nitab4.5_0001942g0140 Nicotiana tabacum HOM05D002718 ORTHO05D003269 8.0e-08 60.5 72 59.7
Phvul.001G077700 Phaseolus vulgaris HOM05D002718 ORTHO05D003269 8.0e-08 60.5 72 56.9
QL11p009227 Quercus lobata HOM05D002718 ORTHO05D003269 8.0e-08 60.5 69 56.5
Hund03264 Selenicereus undatus HOM05D000185 ORTHO05D000105 8.0e-08 60.5 68 61.8
Sc06g0001240 Simmondsia chinensis HOM05D002718 ORTHO05D003269 8.0e-08 60.5 69 60.9
Actinidia25741 Actinidia chinensis HOM05D002718 ORTHO05D003269 1.0e-07 60.1 72 56.9
Aqoxy4G00376 Aquilegia oxysepala HOM05D002718 ORTHO05D003269 1.0e-07 60.1 97 46.4
DCAR_000671 Daucus carota HOM05D002718 ORTHO05D003269 1.0e-07 60.1 69 60.9
ECA246G1707 Erigeron canadensis HOM05D002718 ORTHO05D003269 1.0e-07 60.1 72 56.9
HanXRQChr17g0539291 Helianthus annuus HOM05D002718 ORTHO05D003269 1.0e-07 60.1 72 56.9
Lj5g0024079 Lotus japonicus HOM05D002718 ORTHO05D003269 1.0e-07 60.1 72 58.3
Lalb_Chr22g0361171 Lupinus albus HOM05D002718 ORTHO05D003269 1.0e-07 60.1 70 57.1
Peaxi162Scf00320g00216 Petunia axillaris HOM05D002718 ORTHO05D003269 1.0e-07 60.1 79 49.4
Prupe.1G456000 Prunus persica HOM05D002718 ORTHO05D003269 1.0e-07 60.1 72 58.3
Rhsim04G0184400 Rhododendron simsii HOM05D002718 ORTHO05D003269 1.0e-07 60.1 72 56.9
SGA_v2.0_scaffold27G11655 Striga asiatica HOM05D002718 ORTHO05D003269 1.0e-07 60.1 72 55.6
AL7G39040 Arabidopsis lyrata HOM05D002718 ORTHO05D003269 1.4e-07 59.7 69 59.4
AT4G16130 Arabidopsis thaliana HOM05D002718 ORTHO05D003269 1.4e-07 59.7 69 59.4
CSS0012006 Camellia sinensis var. sinensis HOM05D002718 ORTHO05D003269 1.4e-07 59.7 77 51.9
Carub.0007s2548 Capsella rubella HOM05D002718 ORTHO05D003269 1.4e-07 59.7 74 55.4
Oeu028830.2 Olea europaea HOM05D002718 ORTHO05D003269 1.4e-07 59.7 85 48.2
Sp7g14590 Schrenkiella parvula HOM05D002718 ORTHO05D003269 1.4e-07 59.7 69 59.4
vmacro08496 Vaccinium macrocarpon HOM05D002718 ORTHO05D003269 1.4e-07 59.7 69 58.0
vmacro23159 Vaccinium macrocarpon HOM05D002718 ORTHO05D003269 1.4e-07 59.7 69 58.0
VMungo0647G1266 Vigna mungo HOM05D002718 ORTHO05D003269 1.4e-07 59.7 72 56.9
BcaC09g50300 Brassica carinata HOM05D002718 ORTHO05D003269 1.8e-07 59.3 69 59.4
BcaNung00226 Brassica carinata HOM05D002718 ORTHO05D003269 1.8e-07 59.3 69 59.4
A01p21500 Brassica napus HOM05D002718 ORTHO05D003269 1.8e-07 59.3 69 59.4
A09p58030 Brassica napus HOM05D002718 ORTHO05D003269 1.8e-07 59.3 69 59.4
C01p26840 Brassica napus HOM05D002718 ORTHO05D003269 1.8e-07 59.3 69 59.4
BolC1t02628H Brassica oleracea HOM05D002718 ORTHO05D003269 1.8e-07 59.3 69 59.4
BolC5t31465H Brassica oleracea HOM05D002718 ORTHO05D003269 1.8e-07 59.3 69 59.4
BraA01t02056Z Brassica rapa HOM05D002718 ORTHO05D003269 1.8e-07 59.3 69 59.4
MD08G1124400 Malus domestica HOM05D002718 ORTHO05D003269 1.8e-07 59.3 72 58.3
PSO170G4524 Papaver somniferum HOM05D002718 ORTHO05D003269 1.8e-07 59.3 77 51.9
SalBow4G0158 Salvia bowleyana HOM05D002718 ORTHO05D003269 1.8e-07 59.3 79 51.9
Solyc07g016170.4 Solanum lycopersicum HOM05D002718 ORTHO05D003269 1.8e-07 59.3 72 58.3
HPP92_010414 Vanilla planifolia HOM05D002718 ORTHO05D003269 1.8e-07 59.3 69 53.6
A03p54460 Brassica napus HOM05D002718 ORTHO05D003269 2.3e-07 58.9 69 59.4
A08p23110 Brassica napus HOM05D002718 ORTHO05D003269 2.3e-07 58.9 69 59.4
BraA03t14512Z Brassica rapa HOM05D002718 ORTHO05D003269 2.3e-07 58.9 69 59.4
HanXRQChr12g0384051 Helianthus annuus HOM05D002718 ORTHO05D003269 2.3e-07 58.9 71 52.1
MD15G1103100 Malus domestica HOM05D002718 ORTHO05D003269 2.3e-07 58.9 72 58.3
Manes.03G001300 Manihot esculenta HOM05D002718 ORTHO05D003269 2.3e-07 58.9 78 51.3
QL11p011549 Quercus lobata HOM05D002718 ORTHO05D003269 2.3e-07 58.9 69 56.5
Carub.0005s0889 Capsella rubella HOM05D002718 ORTHO05D003269 3.0e-07 58.5 90 46.7
Thecc.09G002800 Theobroma cacao HOM05D002718 ORTHO05D003269 4.0e-07 58.2 77 49.4
HPP92_017382 Vanilla planifolia HOM05D002718 ORTHO05D003269 4.0e-07 58.2 69 58.0
Cpa.g.sc115.31 Carica papaya HOM05D002718 ORTHO05D003269 5.2e-07 57.8 70 58.6
Cc00_g00350 Coffea canephora HOM05D002718 ORTHO05D003269 5.2e-07 57.8 72 59.7
COL.COLO4_18626 Corchorus olitorius HOM05D002718 ORTHO05D003269 5.2e-07 57.8 77 49.4
AL5G21150 Arabidopsis lyrata HOM05D002718 ORTHO05D003269 6.8e-07 57.4 90 43.3
Lj3C988G10 Lonicera japonica HOM05D002718 ORTHO05D003269 6.8e-07 57.4 72 52.8
unitig_748.g8176 Utricularia gibba HOM05D002718 ORTHO05D003269 8.9e-07 57.0 72 54.2
MSTRG.11818 Avicennia marina HOM05D002718 ORTHO05D003269 1.2e-06 56.6 72 54.2
Lalb_Chr08g0243461 Lupinus albus HOM05D002718 ORTHO05D003269 1.2e-06 56.6 72 55.6
SalBow5G2825 Salvia bowleyana HOM05D002718 ORTHO05D003269 1.2e-06 56.6 72 48.6
BcaC05g26867 Brassica carinata HOM05D002718 ORTHO05D003269 1.5e-06 56.2 68 58.8
Lsat_1_v5_gn_5_56521 Lactuca sativa HOM05D002718 ORTHO05D003269 1.5e-06 56.2 72 54.2
AT3G42850 Arabidopsis thaliana HOM05D002718 ORTHO05D003269 2.0e-06 55.8 90 42.2
Duzib168G0110 Durio zibethinus HOM05D002718 ORTHO05D003269 2.0e-06 55.8 77 49.4
Potri.018G138204 Populus trichocarpa HOM05D002718 ORTHO05D003269 2.0e-06 55.8 72 54.2
Potri.018G145700 Populus trichocarpa HOM05D002718 ORTHO05D003269 2.0e-06 55.8 72 54.2
THA.LOC104810997 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 2.0e-06 55.8 79 48.1
Gohir.D06G109800 Gossypium hirsutum HOM05D002718 ORTHO05D003269 2.6e-06 55.5 78 47.4
Gorai.010G124600 Gossypium raimondii HOM05D002718 ORTHO05D003269 2.6e-06 55.5 78 47.4
Nn5g27632 Nelumbo nucifera HOM05D002718 ORTHO05D003269 2.6e-06 55.5 72 56.9
Sabra18G0120000 Salix brachista HOM05D002718 ORTHO05D003269 2.6e-06 55.5 72 50.0
Sabra18G0127600 Salix brachista HOM05D002718 ORTHO05D003269 2.6e-06 55.5 72 50.0
Actinidia03340 Actinidia chinensis HOM05D002718 ORTHO05D003269 3.4e-06 55.1 72 54.2
Gohir.A06G107500 Gossypium hirsutum HOM05D002718 ORTHO05D003269 4.4e-06 54.7 78 47.4
PSO675G2426 Papaver somniferum HOM05D002718 ORTHO05D003269 7.5e-06 53.9 77 49.4
PSO675G7617 Papaver somniferum HOM05D002718 ORTHO05D003269 9.8e-06 53.5 80 46.2
Zm00001eb315700 Zea mays HOM05D002718 ORTHO05D003269 9.8e-06 53.5 69 55.1
Zm00001eb347750 Zea mays HOM05D002718 ORTHO05D003269 9.8e-06 53.5 69 55.1


User provided reference genes

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