Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.4e-160 569.3 410 100.0
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 6.1e-132 474.9 296 88.9
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 4.7e-84 315.8 218 73.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 4.7e-84 315.8 221 74.7
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.4e-83 314.3 260 68.5
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 3.1e-83 313.2 228 72.4
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 4.0e-83 312.8 270 66.3
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 6.8e-83 312.0 217 73.3
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.2e-82 311.2 219 72.1
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.2e-82 311.2 215 73.5
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 2.0e-82 310.5 221 71.9
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 2.6e-82 310.1 215 73.0
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 4.4e-82 309.3 216 73.1
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 4.4e-82 309.3 206 77.7
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 4.4e-82 309.3 213 74.2
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 5.8e-82 308.9 210 74.8
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 5.8e-82 308.9 210 74.8
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 5.8e-82 308.9 212 73.6
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 9.8e-82 308.1 221 72.9
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.3e-81 307.8 219 72.6
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.7e-81 307.4 215 73.5
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.7e-81 307.4 224 71.4
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 2.2e-81 307.0 230 70.4
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.1e-80 304.7 209 73.7
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.4e-80 303.5 218 73.4
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 2.4e-80 303.5 212 73.1
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 3.2e-80 303.1 215 72.6
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 3.2e-80 303.1 221 72.4
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 4.1e-80 302.8 218 73.4
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 5.4e-80 302.4 223 70.4
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 5.4e-80 302.4 293 57.7
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 7.1e-80 302.0 216 72.7
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 7.1e-80 302.0 210 73.3
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 1.2e-79 301.2 276 62.0
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.1e-79 300.4 207 73.9
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 2.1e-79 300.4 272 62.1
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 3.5e-79 299.7 285 59.6
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 6.0e-79 298.9 213 70.4
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 7.8e-79 298.5 213 71.4
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 1.0e-78 298.1 207 73.4
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 1.3e-78 297.7 214 71.5
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.3e-78 297.7 216 69.4
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.7e-78 297.4 210 72.4
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.3e-78 297.0 225 68.9
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.0e-78 296.6 226 68.1
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 3.9e-78 296.2 209 70.8
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.9e-78 296.2 226 68.1
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 5.1e-78 295.8 209 69.9
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 5.1e-78 295.8 258 63.2
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.6e-78 295.0 209 71.8
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.6e-78 295.0 209 71.8
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-77 294.7 216 69.0
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 1.1e-77 294.7 210 71.9
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.1e-77 294.7 206 72.8
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 1.9e-77 293.9 242 65.3
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 3.3e-77 293.1 219 69.4
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 5.6e-77 292.4 240 66.2
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 7.3e-77 292.0 220 68.6
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 9.5e-77 291.6 280 58.6
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 1.6e-76 290.8 226 68.6
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.6e-76 290.8 209 72.2
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 2.8e-76 290.0 220 68.6
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 3.6e-76 289.7 220 68.2
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 3.6e-76 289.7 209 69.4
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 3.6e-76 289.7 295 56.3
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 3.6e-76 289.7 272 60.3
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 3.6e-76 289.7 249 63.1
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 4.7e-76 289.3 207 72.0
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 4.7e-76 289.3 204 73.0
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.2e-76 288.9 259 61.8
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 6.2e-76 288.9 288 59.4
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.1e-75 288.1 234 65.8
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 4.0e-75 286.2 211 69.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 4.0e-75 286.2 287 58.2
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.2e-74 284.6 321 54.8
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.2e-74 284.6 250 62.8
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 2.0e-74 283.9 303 58.1
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.0e-74 283.9 199 75.4
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 4.4e-74 282.7 293 57.7
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 5.8e-74 282.3 281 59.1
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.7e-73 280.8 288 57.3
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 6.4e-73 278.9 261 63.2
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 1.1e-72 278.1 196 73.0
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.9e-72 277.3 194 73.2
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 3.2e-72 276.6 294 56.1
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.6e-71 274.2 252 60.3
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 2.1e-71 273.9 295 55.9
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 2.7e-71 273.5 202 70.3
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 2.3e-70 270.4 313 52.1
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 3.9e-70 269.6 295 55.3
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 3.3e-69 266.5 295 54.9
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 3.3e-69 266.5 295 54.9
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 3.3e-69 266.5 192 71.4
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.2e-68 264.6 185 73.0
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 1.4e-67 261.2 185 71.9
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.4e-67 261.2 218 60.1
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 9.3e-64 248.4 273 53.1
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 5.6e-61 239.2 203 61.1
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 9.6e-61 238.4 225 59.1
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 9.6e-61 238.4 312 48.7
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 9.0e-59 231.9 198 62.1
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 9.0e-59 231.9 291 49.1
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.9e-54 216.5 188 62.2
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.1e-53 214.9 177 67.8
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 2.8e-52 210.3 200 64.0
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.5e-50 204.5 170 65.9
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 2.1e-47 194.1 240 51.2
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 7.1e-40 169.1 147 59.9
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 4.3e-29 133.3 115 54.8
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.5e-26 124.8 208 37.5
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 5.9e-26 122.9 94 63.8
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.4e-22 111.7 79 74.7
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.1e-21 108.6 63 84.1
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.2e-20 104.4 77 64.9
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 6.3e-20 102.8 212 32.5
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 6.9e-19 99.4 82 65.9
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 3.8e-17 93.6 76 60.5
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 3.8e-17 93.6 64 73.4
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 2.1e-15 87.8 63 71.4
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 7.9e-15 85.9 107 44.9
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 2.3e-14 84.3 165 35.8
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 6.7e-14 82.8 76 57.9
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 2.6e-13 80.9 100 42.0
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 2.6e-13 80.9 100 42.0
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.3e-13 80.5 56 71.4
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 7.4e-13 79.3 164 34.8
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.3e-12 78.6 63 57.1
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.7e-12 78.2 160 38.8
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 5.9e-10 69.7 155 33.5
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 2.7e-07 60.8 35 82.9
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 3.0e-06 57.4 70 52.9
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 6.7e-06 56.2 135 35.6


User provided reference genes

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