Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.5e-250 869.0 433 100.0
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.9e-224 782.3 432 88.4
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.6e-223 779.2 433 88.2
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.6e-223 779.2 433 87.5
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.1e-223 778.9 433 87.8
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.7e-223 778.5 433 89.1
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 7.9e-223 776.9 433 87.3
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.3e-222 776.2 433 86.8
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 6.7e-222 773.9 433 86.6
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 8.7e-222 773.5 433 87.1
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.5e-221 772.7 433 87.3
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 2.5e-221 771.9 433 87.8
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 3.3e-221 771.5 433 87.5
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 5.7e-221 770.8 433 87.3
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.4e-221 770.4 433 86.8
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.3e-220 769.6 433 86.4
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 2.2e-220 768.8 433 87.1
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 2.8e-220 768.5 433 85.9
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 2.8e-220 768.5 432 87.0
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 2.8e-220 768.5 433 86.6
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 4.8e-220 767.7 433 86.6
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 4.8e-220 767.7 433 86.6
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.4e-219 766.1 432 86.3
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.4e-219 766.1 433 86.4
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.8e-219 765.8 433 86.4
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 2.4e-219 765.4 433 85.5
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 2.4e-219 765.4 433 85.9
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 2.4e-219 765.4 433 86.1
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 2.4e-219 765.4 433 86.4
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 5.3e-219 764.2 433 86.4
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 6.9e-219 763.8 433 85.5
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.0e-218 762.3 433 85.0
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.0e-218 762.3 433 85.0
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 2.6e-218 761.9 433 85.2
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 2.6e-218 761.9 433 85.0
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 3.4e-218 761.5 433 85.0
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 5.9e-218 760.8 457 83.6
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 5.9e-218 760.8 433 85.5
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.0e-217 760.0 433 85.0
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.3e-217 759.6 433 85.2
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.7e-217 759.2 432 85.2
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 1.7e-217 759.2 433 86.6
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.7e-217 759.2 433 85.5
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 2.2e-217 758.8 433 85.2
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 2.9e-217 758.4 433 85.2
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 3.8e-217 758.1 433 85.2
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 5.0e-217 757.7 433 85.2
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 6.5e-217 757.3 433 85.5
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 8.5e-217 756.9 441 84.6
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.1e-216 756.5 433 85.7
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.4e-216 756.1 433 84.1
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.4e-216 756.1 433 84.1
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.9e-216 755.7 433 85.0
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.9e-216 755.7 466 80.3
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.9e-216 755.7 433 85.9
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 1.9e-216 755.7 433 85.0
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.9e-216 755.7 433 84.8
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.5e-216 755.4 433 84.1
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.5e-216 755.4 433 85.5
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 3.2e-216 755.0 433 85.9
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 4.2e-216 754.6 416 89.7
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 4.2e-216 754.6 433 84.8
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 5.5e-216 754.2 433 83.8
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 5.5e-216 754.2 433 84.5
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 7.2e-216 753.8 433 84.3
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 7.2e-216 753.8 433 84.5
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 7.2e-216 753.8 433 85.0
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 9.4e-216 753.4 433 84.5
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.2e-215 753.1 433 83.8
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.6e-215 752.7 433 84.8
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.1e-215 752.3 433 84.8
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 2.7e-215 751.9 433 84.5
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 3.6e-215 751.5 433 84.5
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 3.6e-215 751.5 433 84.8
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.0e-214 750.0 416 88.0
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.0e-214 750.0 433 84.8
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 1.0e-214 750.0 433 84.1
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 3.0e-214 748.4 433 84.8
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 2.5e-213 745.3 468 79.9
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 3.3e-213 745.0 433 82.9
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 3.3e-213 745.0 433 84.8
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.8e-212 741.9 433 84.8
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.4e-211 739.6 433 82.9
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.1e-211 738.0 426 84.0
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.6e-210 735.3 433 84.1
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 2.6e-210 735.3 433 82.4
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.5e-210 734.6 466 79.0
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.5e-210 734.6 466 79.0
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 7.7e-210 733.8 433 82.4
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 1.7e-209 732.6 433 82.2
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 3.8e-209 731.5 500 74.8
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 1.1e-208 729.9 433 82.0
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.1e-208 729.9 433 82.0
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 2.5e-208 728.8 433 83.4
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 2.5e-208 728.8 433 81.3
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 4.2e-208 728.0 433 81.5
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 2.1e-207 725.7 433 81.8
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 2.1e-207 725.7 433 81.8
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 2.7e-207 725.3 433 82.0
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 4.7e-207 724.5 433 81.5
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 6.1e-207 724.2 433 83.1
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.0e-206 723.4 433 81.3
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 1.4e-206 723.0 433 81.5
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.4e-206 723.0 433 81.5
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.4e-206 723.0 433 81.5
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.4e-206 723.0 433 81.5
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.4e-206 723.0 433 81.5
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.0e-206 721.8 449 78.4
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 3.9e-206 721.5 433 81.3
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 6.7e-206 720.7 433 81.1
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 6.7e-206 720.7 416 84.4
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.4e-203 713.0 443 80.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 2.4e-203 712.2 447 79.0
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 5.3e-203 711.1 438 80.6
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 4.5e-202 708.0 433 77.4
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 5.9e-202 707.6 445 79.6
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.3e-201 706.4 416 82.2
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 6.1e-199 697.6 433 77.6
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.4e-195 685.6 402 83.8
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 3.5e-194 681.8 433 74.4
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 4.5e-194 681.4 436 75.5
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.3e-193 679.9 433 77.1
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.3e-193 679.9 381 86.1
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 2.9e-193 678.7 403 83.6
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 5.0e-193 677.9 433 79.7
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.2e-185 652.5 450 74.0
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.2e-185 652.5 402 81.1
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.9e-185 652.1 428 76.2
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 4.1e-179 631.7 435 70.3
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 2.9e-177 625.5 433 69.5
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 5.5e-176 621.3 421 69.8
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.8e-174 616.3 443 72.0
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.4e-171 606.7 433 70.2
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 3.1e-171 605.5 433 72.1
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 4.3e-160 568.5 364 76.9
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 7.0e-155 551.2 336 79.5
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 8.3e-148 527.7 302 85.1
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 7.1e-147 524.6 437 60.9
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 6.6e-129 464.9 339 73.2
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.4e-125 452.6 447 53.2
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.7e-116 423.7 271 79.3
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.1e-112 411.0 237 84.0
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 3.8e-100 369.4 277 65.7
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 2.6e-93 346.7 216 78.2
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 3.2e-67 260.0 150 82.7
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 3.3e-59 233.4 135 80.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 4.2e-59 233.0 131 85.5
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 7.5e-56 222.2 452 33.4
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 2.9e-55 220.3 185 64.3
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 5.9e-53 212.6 117 88.9
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 4.7e-50 203.0 115 86.1
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 1.8e-49 201.1 109 89.0
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 8.9e-49 198.7 114 82.5
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 8.3e-47 192.2 103 86.4
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.0e-44 185.3 115 76.5
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 2.5e-43 180.6 252 46.8
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.1e-27 128.6 116 61.2
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 3.3e-27 127.1 61 98.4
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.7e-23 114.8 70 78.6
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 4.6e-21 106.7 56 91.1
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 6.0e-21 106.3 212 35.4
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 1.6e-13 81.6 67 61.2
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 8.1e-10 69.3 53 66.0
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 1.4e-09 68.6 40 82.5


User provided reference genes

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