Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1574 Ceratophyllum demersum HOM05D002575 ORTHO05D005851 4.4e-169 597.8 290 100.0
Lj5P161T22 Lonicera japonica HOM05D002575 ORTHO05D005851 8.8e-93 344.4 322 54.3
Thecc.03G042800 Theobroma cacao HOM05D002575 ORTHO05D005851 4.4e-92 342.0 322 53.1
Nn3g16592 Nelumbo nucifera HOM05D002575 ORTHO05D005851 2.8e-91 339.3 286 60.1
TAR636G1503 Trochodendron aralioides HOM05D002575 ORTHO05D005851 4.8e-91 338.6 263 60.8
Aqoxy1G02870 Aquilegia oxysepala HOM05D002575 ORTHO05D005851 6.3e-91 338.2 286 59.1
TAR636G2646 Trochodendron aralioides HOM05D002575 ORTHO05D005851 8.2e-91 337.8 322 52.8
Aqoxy3G02495 Aquilegia oxysepala HOM05D002575 ORTHO05D005851 1.4e-90 337.0 288 59.7
Nn3g16590 Nelumbo nucifera HOM05D002575 ORTHO05D005851 3.1e-90 335.9 324 54.3
Gohir.D09G051100 Gossypium hirsutum HOM05D002575 ORTHO05D005851 1.3e-88 330.5 263 60.5
Ciclev10018607m.g Citrus clementina HOM05D002575 ORTHO05D005851 1.7e-88 330.1 317 52.1
Haze_18906 Corylus avellana HOM05D002575 ORTHO05D005851 2.2e-88 329.7 269 58.7
Gorai.006G058600 Gossypium raimondii HOM05D002575 ORTHO05D005851 2.2e-88 329.7 321 52.6
Gohir.A09G049800 Gossypium hirsutum HOM05D002575 ORTHO05D005851 2.9e-88 329.3 321 52.3
Potri.015G034500 Populus trichocarpa HOM05D002575 ORTHO05D005851 2.9e-88 329.3 321 52.0
Actinidia18726 Actinidia chinensis HOM05D002575 ORTHO05D005851 6.5e-88 328.2 327 52.0
Cfa020632 Carpinus fangiana HOM05D002575 ORTHO05D005851 8.5e-88 327.8 269 58.4
COL.COLO4_38532 Corchorus olitorius HOM05D002575 ORTHO05D005851 8.5e-88 327.8 341 51.3
Lsat_1_v5_gn_8_145600 Lactuca sativa HOM05D002575 ORTHO05D005851 1.4e-87 327.0 252 62.7
Duzib205G1961 Durio zibethinus HOM05D002575 ORTHO05D005851 1.9e-87 326.6 321 53.0
CSS0040654 Camellia sinensis var. sinensis HOM05D002575 ORTHO05D005851 2.5e-87 326.2 326 53.1
Dinv02695 Davidia involucrata HOM05D002575 ORTHO05D005851 3.2e-87 325.9 326 52.1
Hma1.2p1_0471F.1_g159480 Hydrangea macrophylla HOM05D002575 ORTHO05D005851 5.5e-87 325.1 283 58.7
Rhsim08G0127300 Rhododendron simsii HOM05D002575 ORTHO05D005851 5.5e-87 325.1 313 52.7
RcHm_v2.0_Chr7g0178011 Rosa chinensis HOM05D002575 ORTHO05D005851 5.5e-87 325.1 269 59.1
GSVIVG01008482001 Vitis vinifera HOM05D002575 ORTHO05D005851 1.2e-86 323.9 290 58.3
Thhalv10006632m.g Eutrema salsugineum HOM05D002575 ORTHO05D005851 2.1e-86 323.2 264 57.6
MD06G1232100 Malus domestica HOM05D002575 ORTHO05D005851 4.7e-86 322.0 286 56.6
CiPaw.15G146400 Carya illinoinensis HOM05D002575 ORTHO05D005851 7.9e-86 321.2 322 52.8
FAN13G2332 Fragaria x ananassa HOM05D002575 ORTHO05D005851 7.9e-86 321.2 269 58.4
MD14G1238900 Malus domestica HOM05D002575 ORTHO05D005851 7.9e-86 321.2 327 51.7
FvH4_5g17660 Fragaria vesca HOM05D002575 ORTHO05D005851 1.0e-85 320.9 269 58.0
Atru.chr9.1637 Acer truncatum HOM05D002575 ORTHO05D005851 1.8e-85 320.1 273 57.1
CARHR030690 Cardamine hirsuta HOM05D002575 ORTHO05D005851 1.8e-85 320.1 252 59.9
FAN08G0580 Fragaria x ananassa HOM05D002575 ORTHO05D005851 1.8e-85 320.1 269 58.0
TPR.G22312 Trifolium pratense HOM05D002575 ORTHO05D005851 1.8e-85 320.1 324 50.0
EL10Ac3g05872 Beta vulgaris HOM05D002575 ORTHO05D005851 2.3e-85 319.7 319 50.8
Potri.012G043700 Populus trichocarpa HOM05D002575 ORTHO05D005851 2.3e-85 319.7 287 55.1
Cpa.g.sc3.363 Carica papaya HOM05D002575 ORTHO05D005851 3.0e-85 319.3 283 56.5
Glyma.09G173000 Glycine max HOM05D002575 ORTHO05D005851 3.0e-85 319.3 264 57.2
Lj2g0016045 Lotus japonicus HOM05D002575 ORTHO05D005851 3.0e-85 319.3 321 49.8
QL10p031431 Quercus lobata HOM05D002575 ORTHO05D005851 3.0e-85 319.3 294 56.1
AUR62031415 Chenopodium quinoa HOM05D002575 ORTHO05D005851 3.9e-85 318.9 322 50.3
VMungo0251G0922 Vigna mungo HOM05D002575 ORTHO05D005851 3.9e-85 318.9 325 50.5
Phvul.002G331600 Phaseolus vulgaris HOM05D002575 ORTHO05D005851 6.7e-85 318.2 325 50.5
Prupe.5G236400 Prunus persica HOM05D002575 ORTHO05D005851 6.7e-85 318.2 328 50.6
Sabra12G0030600 Salix brachista HOM05D002575 ORTHO05D005851 6.7e-85 318.2 287 54.4
BcaC05g24806 Brassica carinata HOM05D002575 ORTHO05D005851 8.8e-85 317.8 271 57.2
Eucgr.H00552 Eucalyptus grandis HOM05D002575 ORTHO05D005851 1.1e-84 317.4 280 58.2
Medtr6g071140 Medicago truncatula HOM05D002575 ORTHO05D005851 1.1e-84 317.4 321 50.2
Thecc.04G023100 Theobroma cacao HOM05D002575 ORTHO05D005851 1.1e-84 317.4 321 51.4
BcaC05g24802 Brassica carinata HOM05D002575 ORTHO05D005851 1.5e-84 317.0 275 58.5
FAN04G2427 Fragaria x ananassa HOM05D002575 ORTHO05D005851 1.5e-84 317.0 269 58.0
Carub.0001s2961 Capsella rubella HOM05D002575 ORTHO05D005851 2.0e-84 316.6 254 58.7
Cc00_g07980 Coffea canephora HOM05D002575 ORTHO05D005851 2.0e-84 316.6 263 58.2
Psat1g030040 Pisum sativum HOM05D002575 ORTHO05D005851 2.6e-84 316.2 321 50.2
Glyma.07G104700 Glycine max HOM05D002575 ORTHO05D005851 3.3e-84 315.8 264 56.8
Manes.06G003200 Manihot esculenta HOM05D002575 ORTHO05D005851 3.3e-84 315.8 322 49.7
C05p08310 Brassica napus HOM05D002575 ORTHO05D005851 4.4e-84 315.5 291 55.3
Thhalv10006708m.g Eutrema salsugineum HOM05D002575 ORTHO05D005851 4.4e-84 315.5 291 55.0
THA.LOC104814365 Tarenaya hassleriana HOM05D002575 ORTHO05D005851 4.4e-84 315.5 264 55.3
Lalb_Chr09g0330291 Lupinus albus HOM05D002575 ORTHO05D005851 5.7e-84 315.1 263 57.4
THA.LOC104798618 Tarenaya hassleriana HOM05D002575 ORTHO05D005851 5.7e-84 315.1 325 49.5
Ca_25356_v3 Cicer arietinum L. HOM05D002575 ORTHO05D005851 7.4e-84 314.7 292 54.8
AUR62021131 Chenopodium quinoa HOM05D002575 ORTHO05D005851 9.7e-84 314.3 322 50.3
Glyma.08G055900 Glycine max HOM05D002575 ORTHO05D005851 1.3e-83 313.9 322 51.2
arahy.Tifrunner.gnm1.ann1.TQ1MU5 Arachis hypogaea HOM05D002575 ORTHO05D005851 1.7e-83 313.5 282 56.0
A08p34150 Brassica napus HOM05D002575 ORTHO05D005851 1.7e-83 313.5 285 54.7
BolC5t29581H Brassica oleracea HOM05D002575 ORTHO05D005851 1.7e-83 313.5 273 57.9
BolC8t48974H Brassica oleracea HOM05D002575 ORTHO05D005851 1.7e-83 313.5 285 54.7
BraA08t35327Z Brassica rapa HOM05D002575 ORTHO05D005851 1.7e-83 313.5 285 54.7
A06p06820 Brassica napus HOM05D002575 ORTHO05D005851 2.8e-83 312.8 291 55.0
BraA06t23896Z Brassica rapa HOM05D002575 ORTHO05D005851 2.8e-83 312.8 291 55.0
Peaxi162Scf00314g00047 Petunia axillaris HOM05D002575 ORTHO05D005851 2.8e-83 312.8 279 57.0
Zm00001eb280780 Zea mays HOM05D002575 ORTHO05D005851 2.8e-83 312.8 260 58.8
Os06g0252300 Oryza sativa ssp. japonica HOM05D002575 ORTHO05D005851 3.7e-83 312.4 271 57.2
Rhsim05G0011000 Rhododendron simsii HOM05D002575 ORTHO05D005851 3.7e-83 312.4 313 51.1
Sp1g08800 Schrenkiella parvula HOM05D002575 ORTHO05D005851 3.7e-83 312.4 253 59.7
C08p13440 Brassica napus HOM05D002575 ORTHO05D005851 4.8e-83 312.0 285 54.4
MELO3C002148.2 Cucumis melo HOM05D002575 ORTHO05D005851 4.8e-83 312.0 268 57.1
PGR083G2696 Punica granatum HOM05D000154 ORTHO05D005851 4.8e-83 312.0 270 58.1
Aa31LG9G16040 Aethionema arabicum HOM05D002575 ORTHO05D005851 8.2e-83 311.2 254 58.3
CsaV3_1G007320 Cucumis sativus L. HOM05D002575 ORTHO05D005851 8.2e-83 311.2 327 50.2
BcaC07g38555 Brassica carinata HOM05D002575 ORTHO05D005851 1.1e-82 310.8 285 54.4
PGSC0003DMG400014182 Solanum tuberosum HOM05D002575 ORTHO05D005851 1.8e-82 310.1 259 57.1
PSO478G3706 Papaver somniferum HOM05D002575 ORTHO05D005851 2.4e-82 309.7 270 57.8
ECA233G4261 Erigeron canadensis HOM05D002575 ORTHO05D005851 3.1e-82 309.3 323 49.2
Sed0021537 Sechium edule HOM05D002575 ORTHO05D005851 3.1e-82 309.3 288 54.9
AL1G49270 Arabidopsis lyrata HOM05D002575 ORTHO05D005851 9.1e-82 307.8 251 57.4
CAN.G843.28 Capsicum annuum HOM05D002575 ORTHO05D005851 9.1e-82 307.8 279 55.6
ClCG04G010460 Citrullus lanatus HOM05D002575 ORTHO05D005851 9.1e-82 307.8 268 56.7
TWI15G0942 Tripterygium wilfordii HOM05D000154 ORTHO05D005851 9.1e-82 307.8 321 49.5
Ah.07g206610 Amaranthus hybridus HOM05D002575 ORTHO05D005851 1.2e-81 307.4 284 54.2
Hund11722 Selenicereus undatus HOM05D002575 ORTHO05D005851 1.2e-81 307.4 322 50.6
Sc09g0000650 Simmondsia chinensis HOM05D002575 ORTHO05D005851 1.2e-81 307.4 322 49.1
DCAR_003534 Daucus carota HOM05D002575 ORTHO05D005851 1.6e-81 307.0 263 57.4
HanXRQChr08g0227431 Helianthus annuus HOM05D002575 ORTHO05D005851 1.6e-81 307.0 320 49.7
PSO017G5700 Papaver somniferum HOM05D002575 ORTHO05D005851 1.6e-81 307.0 328 49.7
Sopen03g037310 Solanum pennellii HOM05D002575 ORTHO05D005851 2.0e-81 306.6 259 56.0
Oeu035881.1 Olea europaea HOM05D002575 ORTHO05D005851 4.5e-81 305.4 269 55.4
CARHR010270 Cardamine hirsuta HOM05D002575 ORTHO05D005851 5.9e-81 305.1 272 56.2
Solyc03g118420.4 Solanum lycopersicum HOM05D002575 ORTHO05D005851 7.7e-81 304.7 259 55.6
AL1G20860 Arabidopsis lyrata HOM05D002575 ORTHO05D005851 1.7e-80 303.5 255 58.8
Zm00001eb371520 Zea mays HOM05D002575 ORTHO05D005851 2.2e-80 303.1 260 57.3
SalBow3G3712 Salvia bowleyana HOM05D002575 ORTHO05D005851 2.5e-79 299.7 283 53.7
CSS0046441 Camellia sinensis var. sinensis HOM05D002575 ORTHO05D005851 3.2e-79 299.3 326 50.3
AT1G10170 Arabidopsis thaliana HOM05D002575 ORTHO05D005851 1.6e-78 297.0 255 56.9
Nitab4.5_0002450g0070 Nicotiana tabacum HOM05D002575 ORTHO05D005851 2.1e-78 296.6 287 51.6
Medtr4g027040 Medicago truncatula HOM05D002575 ORTHO05D005851 3.6e-78 295.8 260 55.8
Carub.0001s0958 Capsella rubella HOM05D002575 ORTHO05D005851 4.7e-78 295.4 255 57.6
BolC8t52442H Brassica oleracea HOM05D002575 ORTHO05D005851 6.1e-78 295.0 268 54.1
A09p65160 Brassica napus HOM05D002575 ORTHO05D005851 5.2e-77 292.0 286 52.4
Ah.13g069130 Amaranthus hybridus HOM05D002575 ORTHO05D005851 4.4e-76 288.9 268 52.6
Migut.D01221 Erythranthe guttata HOM05D002575 ORTHO05D005851 4.4e-76 288.9 258 52.7
ATR0753G085 Amborella trichopoda HOM05D002575 ORTHO05D005851 5.7e-76 288.5 265 55.8
SGA_v2.0_scaffold40G15642 Striga asiatica HOM05D002575 ORTHO05D005851 9.7e-76 287.7 294 51.0
BraA09t41859Z Brassica rapa HOM05D002575 ORTHO05D005851 1.3e-75 287.3 286 51.4
Psat7g000840 Pisum sativum HOM05D002575 ORTHO05D005851 1.3e-75 287.3 275 52.4
Ca_17175_v3 Cicer arietinum L. HOM05D002575 ORTHO05D005851 3.7e-75 285.8 323 47.7
unitig_62.g23809 Utricularia gibba HOM05D002575 ORTHO05D005851 1.2e-73 280.8 262 51.9
Lj4g0001149 Lotus japonicus HOM05D002575 ORTHO05D005851 4.5e-73 278.9 246 55.3
Ah.10g031020 Amaranthus hybridus HOM05D002575 ORTHO05D005851 7.7e-73 278.1 238 55.0
Eucgr.K02284 Eucalyptus grandis HOM05D002575 ORTHO05D005851 8.5e-72 274.6 257 52.9
C08p49100 Brassica napus HOM05D002575 ORTHO05D005851 1.6e-70 270.4 268 51.5
SHI07444 Sapria himalayana HOM05D002575 ORTHO05D005851 1.3e-67 260.8 316 43.7
SEGI_29365 Sequoiadendron giganteum HOM05D002575 ORTHO05D005851 1.7e-67 260.4 284 49.6
Mapoly0036s0109 Marchantia polymorpha HOM05D002575 ORTHO05D005851 1.0e-64 251.1 324 43.2
Glyma.05G247466 Glycine max HOM05D002575 ORTHO05D005851 2.2e-64 250.0 196 57.7
HPP92_020386 Vanilla planifolia HOM05D002575 ORTHO05D005851 1.9e-63 246.9 209 58.9
BcaC07g41825 Brassica carinata HOM05D002575 ORTHO05D005851 8.0e-62 241.5 216 53.7
BcaB08g37336 Brassica carinata HOM05D002575 ORTHO05D005851 6.8e-61 238.4 241 51.9
Sabra15G0028500 Salix brachista HOM05D000154 ORTHO05D005851 4.3e-55 219.2 321 40.5
HanXRQChr01g0030461 Helianthus annuus HOM05D002575 ORTHO05D005851 5.6e-55 218.8 251 48.2
HanXRQChr01g0030941 Helianthus annuus HOM05D002575 ORTHO05D005851 5.6e-55 218.8 251 48.2
SEGI_07791 Sequoiadendron giganteum HOM05D002575 ORTHO05D005851 2.3e-53 213.4 255 45.5
Pp3c25_1050 Physcomitrium patens HOM05D002575 ORTHO05D005851 4.0e-53 212.6 268 44.4
Pp3c25_1058 Physcomitrium patens HOM05D002575 ORTHO05D005851 4.0e-53 212.6 268 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1691 Anthoceros agrestis HOM05D002575 ORTHO05D005851 3.7e-51 206.1 256 41.4
CSS0048466 Camellia sinensis var. sinensis HOM05D002575 ORTHO05D005851 1.2e-49 201.1 307 39.7
HanXRQChr01g0030921 Helianthus annuus HOM05D002575 ORTHO05D005851 1.3e-48 197.6 274 43.4
SMO118G0512 Selaginella moellendorffii HOM05D002575 ORTHO05D005851 4.7e-46 189.1 258 37.6
CBR_g24300 Chara braunii HOM05D002575 ORTHO05D005851 6.2e-46 188.7 351 36.2
CDE11G0366 Ceratophyllum demersum HOM05D002575 ORTHO05D024796 2.6e-36 156.8 142 59.9
CAN.G149.6 Capsicum annuum HOM05D002575 ORTHO05D024796 4.4e-28 129.4 99 62.6
CBR_g19005 Chara braunii HOM05D002575 ORTHO05D005851 2.7e-25 120.2 173 35.8
AUR62021129 Chenopodium quinoa HOM05D002575 ORTHO05D005851 5.1e-16 89.4 153 35.3
CAN.G135.19 Capsicum annuum HOM05D002575 ORTHO05D024796 1.2e-12 78.2 57 63.2
CAN.G758.9 Capsicum annuum HOM05D002575 ORTHO05D024796 1.2e-12 78.2 57 64.9


User provided reference genes

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