Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 6.5e-161 570.9 326 100.0
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.6e-114 416.8 295 70.8
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 2.7e-114 416.0 298 70.8
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 2.7e-114 416.0 298 69.8
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.0e-113 414.1 295 69.8
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.7e-113 413.3 295 70.2
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.7e-113 413.3 295 69.2
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 8.6e-113 411.0 295 70.5
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.5e-112 410.2 297 69.0
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 1.9e-112 409.8 295 68.5
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 3.3e-112 409.1 292 68.5
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 1.6e-111 406.8 290 70.0
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 1.6e-111 406.8 295 69.8
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.4e-110 403.7 295 68.8
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.8e-110 403.3 291 70.1
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 6.8e-110 401.4 290 69.3
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.9e-110 401.0 288 68.4
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.2e-109 400.6 291 69.8
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.5e-109 400.2 296 67.2
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.5e-109 400.2 288 68.4
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.5e-109 400.2 291 66.7
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.0e-109 399.8 287 70.0
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.6e-109 399.4 291 68.0
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 4.4e-109 398.7 294 67.7
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 5.7e-109 398.3 295 67.8
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.8e-109 397.5 288 68.1
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.2e-108 396.4 295 66.8
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 2.2e-108 396.4 296 67.6
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 2.9e-108 396.0 295 68.5
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 3.7e-108 395.6 296 66.9
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 4.9e-108 395.2 292 67.1
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 8.3e-108 394.4 290 67.6
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.1e-107 394.0 290 67.2
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 1.4e-107 393.7 291 68.4
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.4e-107 393.7 293 67.2
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.4e-107 393.7 290 66.6
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.8e-107 393.3 294 67.0
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.8e-107 393.3 297 67.7
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.8e-107 393.3 295 66.1
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 2.4e-107 392.9 295 67.5
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.4e-107 391.7 290 67.9
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 7.0e-107 391.3 291 67.7
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.0e-106 389.8 285 68.1
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 2.7e-106 389.4 292 66.4
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.7e-106 389.4 290 67.9
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 6.0e-106 388.3 289 67.1
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 6.0e-106 388.3 292 68.5
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 6.0e-106 388.3 288 65.6
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.3e-105 387.1 292 68.2
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.3e-105 386.3 299 64.5
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 6.6e-105 384.8 286 66.1
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 8.6e-105 384.4 293 65.5
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.1e-104 384.0 293 66.2
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 1.1e-104 384.0 294 66.3
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 1.5e-104 383.6 293 65.5
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 4.3e-104 382.1 293 63.8
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 4.3e-104 382.1 289 66.1
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 4.3e-104 382.1 293 65.2
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 5.6e-104 381.7 301 64.8
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 7.3e-104 381.3 291 66.3
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 9.5e-104 380.9 295 64.7
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 1.2e-103 380.6 295 64.7
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.2e-103 380.6 295 64.7
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.2e-103 380.6 295 64.7
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.6e-103 380.2 292 66.4
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 2.1e-103 379.8 292 63.4
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 2.8e-103 379.4 287 65.2
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 6.2e-103 378.3 295 64.4
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 6.2e-103 378.3 293 64.2
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 8.0e-103 377.9 295 62.4
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 8.0e-103 377.9 290 65.2
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.8e-102 376.7 295 64.1
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 4.0e-102 375.6 295 63.4
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 5.2e-102 375.2 300 63.3
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.5e-101 373.6 293 64.8
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 1.5e-101 373.6 293 63.8
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 3.4e-101 372.5 297 63.3
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.7e-100 370.2 295 63.7
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 3.7e-100 369.0 299 62.5
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 4.9e-100 368.6 291 64.6
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 6.4e-100 368.2 288 64.6
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 6.4e-100 368.2 288 62.5
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 8.3e-100 367.9 292 62.7
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.9e-99 366.7 286 65.0
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 2.4e-99 366.3 286 64.0
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 3.2e-99 365.9 288 62.2
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 3.2e-99 365.9 290 65.2
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 4.1e-99 365.5 302 61.9
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 4.1e-99 365.5 288 64.2
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 1.2e-98 364.0 313 62.0
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 3.5e-98 362.5 354 55.1
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 4.6e-98 362.1 292 61.6
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 4.6e-98 362.1 296 62.8
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 3.0e-97 359.4 285 62.1
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 3.9e-97 359.0 282 64.9
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.9e-97 359.0 325 56.9
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 4.3e-96 355.5 294 60.9
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 5.6e-96 355.1 290 61.0
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 7.3e-96 354.8 297 62.6
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.8e-95 352.8 294 60.2
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 8.1e-95 351.3 294 60.9
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.1e-94 350.9 294 59.5
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.1e-94 350.9 294 60.5
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.4e-94 350.5 294 61.2
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.4e-94 350.5 294 61.2
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-93 347.4 294 60.5
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.2e-93 347.4 294 60.5
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 2.0e-93 346.7 294 60.5
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 4.4e-93 345.5 263 67.3
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 7.5e-93 344.7 380 49.7
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.7e-92 343.6 294 60.2
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.7e-92 343.6 255 66.3
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.7e-92 343.6 312 57.1
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-92 343.2 294 59.9
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 3.7e-92 342.4 294 59.2
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 8.3e-92 341.3 294 59.9
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 8.3e-92 341.3 291 59.8
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 3.2e-91 339.3 294 58.8
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 7.1e-91 338.2 317 58.0
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 7.8e-90 334.7 300 60.0
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 7.8e-90 334.7 291 58.4
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 1.0e-89 334.3 299 58.9
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 5.6e-88 328.6 294 58.2
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 1.6e-87 327.0 297 56.9
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 5.2e-86 322.0 312 54.8
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 2.6e-85 319.7 296 57.8
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 4.1e-83 312.4 300 56.0
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 4.6e-82 308.9 260 61.5
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.5e-80 303.9 347 49.9
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.6e-77 293.1 295 51.9
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 4.9e-76 288.9 289 54.0
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 7.1e-75 285.0 295 51.5
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 6.4e-68 261.9 294 50.3
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 3.2e-67 259.6 301 49.2
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 1.8e-65 253.8 246 54.1
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 3.3e-64 249.6 295 49.2
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 4.8e-63 245.7 284 48.6
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 9.0e-62 241.5 293 47.8
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 2.0e-61 240.4 293 48.5
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 3.4e-61 239.6 253 52.6
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 5.5e-59 232.3 178 65.2
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 1.7e-52 210.7 167 62.9
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 1.1e-51 208.0 237 50.6
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 3.5e-50 203.0 147 66.7
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 3.0e-49 199.9 201 54.2
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 2.4e-46 190.3 190 54.7
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.7e-40 169.1 139 62.6
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.7e-39 167.5 303 36.3
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.2e-37 161.4 154 57.8
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 5.9e-37 159.1 157 54.1
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 4.7e-34 149.4 305 38.0
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 3.0e-33 146.7 157 55.4
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.8e-31 140.2 173 50.3
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 8.2e-31 138.7 314 34.1
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 6.5e-28 129.0 83 77.1
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 3.2e-27 126.7 119 58.0
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.1e-22 111.7 78 66.7
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.6e-21 107.8 111 49.5
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.7e-20 104.4 76 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.2e-18 98.2 92 55.4
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.2e-16 91.7 99 54.5
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 6.3e-15 85.9 61 73.8
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 4.0e-09 66.6 67 49.3
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 8.8e-09 65.5 52 57.7
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 4.4e-08 63.2 45 66.7
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 2.8e-07 60.5 125 36.8
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 5.4e-06 56.2 62 50.0


User provided reference genes

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