Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0784 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 1.6e-171 605.9 293 100.0
Nn6g34999 Nelumbo nucifera HOM05D000144 ORTHO05D007336 1.4e-135 486.5 293 77.8
Gohir.A07G108500 Gossypium hirsutum HOM05D000144 ORTHO05D007336 3.9e-133 478.4 293 76.5
TAR636G0978 Trochodendron aralioides HOM05D000144 ORTHO05D007336 1.5e-132 476.5 293 76.1
Duzib170G0934 Durio zibethinus HOM05D000144 ORTHO05D007336 2.5e-132 475.7 293 77.1
Gohir.D07G112300 Gossypium hirsutum HOM05D000144 ORTHO05D007336 5.7e-132 474.6 293 75.8
Gorai.001G120700 Gossypium raimondii HOM05D000144 ORTHO05D007336 5.7e-132 474.6 293 75.8
VMungo1080G0899 Vigna mungo HOM05D000144 ORTHO05D007336 1.4e-130 469.9 293 77.1
Thecc.09G288400 Theobroma cacao HOM05D000144 ORTHO05D007336 1.8e-130 469.5 293 76.1
arahy.Tifrunner.gnm1.ann1.GZ1FF1 Arachis hypogaea HOM05D000144 ORTHO05D007336 1.2e-129 466.8 276 78.6
arahy.Tifrunner.gnm1.ann1.LG5WAH Arachis hypogaea HOM05D000144 ORTHO05D007336 1.2e-129 466.8 276 78.6
Glyma.13G318300 Glycine max HOM05D000144 ORTHO05D007336 3.4e-129 465.3 276 79.7
Glyma.12G182700 Glycine max HOM05D000144 ORTHO05D007336 5.9e-129 464.5 276 80.1
Ca_01669_v3 Cicer arietinum L. HOM05D000144 ORTHO05D007336 1.3e-128 463.4 287 74.9
FAN21G0232 Fragaria x ananassa HOM05D000144 ORTHO05D007336 1.3e-128 463.4 278 77.0
ATR0820G178 Amborella trichopoda HOM05D000144 ORTHO05D007336 1.7e-128 463.0 290 76.2
PGR119G0139 Punica granatum HOM05D000144 ORTHO05D007336 2.9e-128 462.2 276 77.2
CiPaw.14G102500 Carya illinoinensis HOM05D000144 ORTHO05D007336 5.0e-128 461.5 293 74.1
Dinv42577 Davidia involucrata HOM05D000144 ORTHO05D007336 6.5e-128 461.1 293 75.1
RcHm_v2.0_Chr5g0043591 Rosa chinensis HOM05D000144 ORTHO05D007336 1.1e-127 460.3 278 77.3
FAN11G0873 Fragaria x ananassa HOM05D000144 ORTHO05D007336 1.4e-127 459.9 278 76.6
Oeu035545.1 Olea europaea HOM05D000144 ORTHO05D007336 1.4e-127 459.9 291 73.9
Cfa010061 Carpinus fangiana HOM05D000144 ORTHO05D007336 1.9e-127 459.5 293 74.4
QL01p013297 Quercus lobata HOM05D000144 ORTHO05D007336 2.5e-127 459.1 278 78.1
Potri.009G146400 Populus trichocarpa HOM05D000144 ORTHO05D007336 3.2e-127 458.8 278 77.3
Sed0002834 Sechium edule HOM05D000144 ORTHO05D007336 3.2e-127 458.8 293 74.7
Sabra09G0113200 Salix brachista HOM05D000144 ORTHO05D007336 1.2e-126 456.8 278 76.3
Sabra09G0115600 Salix brachista HOM05D000144 ORTHO05D007336 1.2e-126 456.8 278 76.3
Phvul.005G126100 Phaseolus vulgaris HOM05D000144 ORTHO05D007336 1.6e-126 456.4 293 75.4
Prupe.6G123000 Prunus persica HOM05D000144 ORTHO05D007336 2.1e-126 456.1 278 76.6
TPR.G23395 Trifolium pratense HOM05D000144 ORTHO05D007336 2.1e-126 456.1 276 75.0
FAN25G0117 Fragaria x ananassa HOM05D000144 ORTHO05D007336 2.7e-126 455.7 283 75.3
FAN25G0992 Fragaria x ananassa HOM05D000144 ORTHO05D007336 2.7e-126 455.7 283 75.3
Eucgr.J00461 Eucalyptus grandis HOM05D000144 ORTHO05D007336 4.7e-126 454.9 276 77.9
COL.COLO4_19942 Corchorus olitorius HOM05D000144 ORTHO05D007336 1.0e-125 453.8 328 68.9
Hma1.2p1_0305F.1_g119430 Hydrangea macrophylla HOM05D000144 ORTHO05D007336 1.0e-125 453.8 276 76.1
DCAR_006150 Daucus carota HOM05D000144 ORTHO05D007336 2.3e-125 452.6 283 75.3
Lj3g0007481 Lotus japonicus HOM05D000144 ORTHO05D007336 2.3e-125 452.6 287 74.6
PSO384G3065 Papaver somniferum HOM05D000144 ORTHO05D007336 2.3e-125 452.6 293 74.1
TWI79G0633 Tripterygium wilfordii HOM05D000144 ORTHO05D007336 3.0e-125 452.2 293 71.7
Carub.0015s0019 Capsella rubella HOM05D000144 ORTHO05D007336 3.9e-125 451.8 276 75.0
PSO339G1139 Papaver somniferum HOM05D000144 ORTHO05D007336 3.9e-125 451.8 293 74.1
Carub.0005s1024 Capsella rubella HOM05D000144 ORTHO05D007336 5.1e-125 451.4 276 75.0
MSTRG.17716 Avicennia marina HOM05D000144 ORTHO05D007336 6.7e-125 451.1 276 75.0
Nitab4.5_0003532g0080 Nicotiana tabacum HOM05D000144 ORTHO05D007336 6.7e-125 451.1 283 73.5
Psat5g256080 Pisum sativum HOM05D000144 ORTHO05D007336 6.7e-125 451.1 293 72.4
Aa31LG4G14360 Aethionema arabicum HOM05D000144 ORTHO05D007336 1.1e-124 450.3 277 74.4
Medtr2g085075 Medicago truncatula HOM05D000144 ORTHO05D007336 1.5e-124 449.9 295 72.5
THA.LOC104799539 Tarenaya hassleriana HOM05D000144 ORTHO05D007336 2.0e-124 449.5 300 70.0
Lalb_Chr14g0374131 Lupinus albus HOM05D000144 ORTHO05D007336 2.6e-124 449.1 293 73.0
Ciclev10028028m.g Citrus clementina HOM05D000144 ORTHO05D007336 3.3e-124 448.7 293 73.0
CAN.G644.8 Capsicum annuum HOM05D000144 ORTHO05D007336 4.4e-124 448.4 296 70.9
TWI79G1360 Tripterygium wilfordii HOM05D000144 ORTHO05D007336 5.7e-124 448.0 293 71.0
MD11G1160100 Malus domestica HOM05D000144 ORTHO05D007336 9.7e-124 447.2 280 75.0
Sc21g0004790 Simmondsia chinensis HOM05D000144 ORTHO05D007336 1.7e-123 446.4 286 74.1
ClCG01G012500 Citrullus lanatus HOM05D000144 ORTHO05D007336 2.2e-123 446.0 263 78.7
CsaV3_1G014630 Cucumis sativus L. HOM05D000144 ORTHO05D007336 2.8e-123 445.7 264 78.4
Peaxi162Scf00544g01012 Petunia axillaris HOM05D000144 ORTHO05D007336 4.8e-123 444.9 276 75.7
Atru.chr3.3339 Acer truncatum HOM05D000144 ORTHO05D007336 6.3e-123 444.5 295 72.2
SGA_v2.0_scaffold102G29927 Striga asiatica HOM05D000144 ORTHO05D007336 6.3e-123 444.5 276 74.6
Sp5g16610 Schrenkiella parvula HOM05D000144 ORTHO05D007336 8.2e-123 444.1 284 72.2
MELO3C004752.2 Cucumis melo HOM05D000144 ORTHO05D007336 1.1e-122 443.7 263 78.3
A06p21820 Brassica napus HOM05D000144 ORTHO05D007336 1.8e-122 443.0 293 72.0
SalBow3G1277 Salvia bowleyana HOM05D000144 ORTHO05D007336 1.8e-122 443.0 276 74.3
AT3G44600 Arabidopsis thaliana HOM05D000144 ORTHO05D007336 2.4e-122 442.6 275 74.2
Manes.04G006500 Manihot esculenta HOM05D000144 ORTHO05D007336 7.0e-122 441.0 262 77.9
BcaB01g01158 Brassica carinata HOM05D000144 ORTHO05D007336 9.1e-122 440.7 276 73.6
Migut.N02503 Erythranthe guttata HOM05D000144 ORTHO05D007336 9.1e-122 440.7 276 73.2
Thhalv10002440m.g Eutrema salsugineum HOM05D000144 ORTHO05D007336 9.1e-122 440.7 283 72.4
HanXRQChr04g0094681 Helianthus annuus HOM05D000144 ORTHO05D007336 9.1e-122 440.7 298 72.1
Hund20866 Selenicereus undatus HOM05D000144 ORTHO05D007336 1.2e-121 440.3 278 73.0
BcaC01g02060 Brassica carinata HOM05D000144 ORTHO05D007336 2.0e-121 439.5 293 71.7
C03p69060 Brassica napus HOM05D000144 ORTHO05D007336 2.0e-121 439.5 293 71.7
BolC3t19161H Brassica oleracea HOM05D000144 ORTHO05D007336 2.0e-121 439.5 293 71.7
BraA06t25273Z Brassica rapa HOM05D000144 ORTHO05D007336 2.0e-121 439.5 293 71.7
Aqoxy4G02840 Aquilegia oxysepala HOM05D000144 ORTHO05D007336 2.6e-121 439.1 270 75.2
CARHR151580 Cardamine hirsuta HOM05D000144 ORTHO05D007336 2.6e-121 439.1 272 73.9
CANSAT54G2980 Cannabis sativa HOM05D000144 ORTHO05D007336 4.5e-121 438.3 294 71.1
MD03G1138000 Malus domestica HOM05D000144 ORTHO05D007336 1.3e-120 436.8 264 76.9
EL10Ac7g15788 Beta vulgaris HOM05D000144 ORTHO05D007336 3.8e-120 435.3 289 71.3
Ah.08g215990 Amaranthus hybridus HOM05D000144 ORTHO05D007336 6.5e-120 434.5 294 69.0
CSS0014801 Camellia sinensis var. sinensis HOM05D000144 ORTHO05D007336 6.5e-120 434.5 263 77.6
Zm00001eb176200 Zea mays HOM05D000144 ORTHO05D007336 1.4e-119 433.3 277 73.3
AUR62009798 Chenopodium quinoa HOM05D000144 ORTHO05D007336 2.5e-119 432.6 291 70.1
PGSC0003DMG400007418 Solanum tuberosum HOM05D000144 ORTHO05D007336 3.2e-119 432.2 260 76.5
HPP92_001977 Vanilla planifolia HOM05D000144 ORTHO05D007336 3.2e-119 432.2 294 71.4
Cc01_g09550 Coffea canephora HOM05D000144 ORTHO05D007336 5.5e-119 431.4 260 76.2
Solyc11g067090.2 Solanum lycopersicum HOM05D000144 ORTHO05D007336 1.2e-118 430.3 260 75.8
Sopen11g026800 Solanum pennellii HOM05D000144 ORTHO05D007336 1.6e-118 429.9 260 75.8
AL5G22730 Arabidopsis lyrata HOM05D000144 ORTHO05D007336 3.6e-118 428.7 260 75.4
SEGI_28586 Sequoiadendron giganteum HOM05D000144 ORTHO05D007336 5.2e-117 424.9 277 71.8
Lsat_1_v5_gn_6_39720 Lactuca sativa HOM05D000144 ORTHO05D007336 8.8e-117 424.1 297 70.4
Os08g0557500 Oryza sativa ssp. japonica HOM05D000144 ORTHO05D007336 4.4e-116 421.8 260 75.8
Manes.14G162200 Manihot esculenta HOM05D000144 ORTHO05D007336 7.4e-116 421.0 296 69.6
ECA233G1240 Erigeron canadensis HOM05D000144 ORTHO05D007336 1.4e-114 416.8 276 70.7
Rhsim02G0084400 Rhododendron simsii HOM05D000144 ORTHO05D007336 1.8e-114 416.4 304 66.4
Gohir.A07G108720 Gossypium hirsutum HOM05D000144 ORTHO05D007336 3.1e-114 415.6 242 79.3
Mapoly0008s0208 Marchantia polymorpha HOM05D000144 ORTHO05D007336 5.9e-113 411.4 280 67.9
Haze_23428 Corylus avellana HOM05D000144 ORTHO05D007336 5.5e-111 404.8 343 60.9
Lj2C989G2 Lonicera japonica HOM05D000144 ORTHO05D007336 7.2e-111 404.4 279 69.5
Pp3c9_24450 Physcomitrium patens HOM05D000144 ORTHO05D007336 6.7e-109 397.9 291 65.6
Nitab4.5_0004240g0040 Nicotiana tabacum HOM05D000144 ORTHO05D007336 1.1e-106 390.6 280 66.4
AUR62039246 Chenopodium quinoa HOM05D000144 ORTHO05D007336 5.9e-105 384.8 241 73.4
Aqoxy7G01340 Aquilegia oxysepala HOM05D000144 ORTHO05D007336 4.2e-103 378.6 289 63.7
SMO364G0191 Selaginella moellendorffii HOM05D000144 ORTHO05D007336 4.4e-100 368.6 262 65.3
Cpa.g.sc31.94 Carica papaya HOM05D000144 ORTHO05D007336 4.1e-98 362.1 230 74.3
Actinidia07228 Actinidia chinensis HOM05D000144 ORTHO05D007336 3.3e-95 352.4 213 76.5
CBR_g45485 Chara braunii HOM05D000144 ORTHO05D007336 1.3e-88 330.5 237 65.0
AagrBONN_evm.TU.Sc2ySwM_344.1463 Anthoceros agrestis HOM05D000144 ORTHO05D007336 1.6e-81 307.0 213 65.3
Actinidia24194 Actinidia chinensis HOM05D000144 ORTHO05D007336 8.0e-78 294.7 285 56.1
Hma1.2p1_0305F.1_g119440 Hydrangea macrophylla HOM05D000144 ORTHO05D007336 5.2e-77 292.0 183 74.9
Cre10.g453900 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D007336 8.9e-77 291.2 288 48.3
MCO06G086 Micromonas commoda HOM05D000144 ORTHO05D007336 1.3e-75 287.3 266 53.0
PRCOL_00001826 Prasinoderma coloniale HOM05D000144 ORTHO05D007336 1.4e-66 257.3 279 45.5
FvH4_3g24280 Fragaria vesca HOM05D000144 ORTHO05D007336 4.3e-63 245.7 157 71.3
Haze_26326 Corylus avellana HOM05D000144 ORTHO05D007336 3.9e-56 222.6 251 42.6
TPR.G3403 Trifolium pratense HOM05D000477 ORTHO05D000338 1.8e-53 213.8 138 71.0
SHI00546 Sapria himalayana HOM05D000144 ORTHO05D007336 2.6e-36 156.8 157 51.6
Aa31LG9G7040 Aethionema arabicum HOM05D000144 ORTHO05D007336 8.7e-32 141.7 96 67.7
Lsat_1_v5_gn_8_43261 Lactuca sativa HOM05D000144 ORTHO05D007336 4.0e-29 132.9 78 76.9
MBI17_g37522_MAGBIO Magnolia biondii HOM05D000144 ORTHO05D007336 2.9e-27 126.7 86 70.9
Lsat_1_v5_gn_2_29280 Lactuca sativa HOM05D000144 ORTHO05D023591 6.9e-21 105.5 62 77.4
Lsat_1_v5_gn_6_56741 Lactuca sativa HOM05D000144 ORTHO05D007336 3.8e-19 99.8 61 77.0
Cpa.g.c27498 Carica papaya HOM05D000144 ORTHO05D007336 4.5e-12 76.3 36 94.4
SEGI_15813 Sequoiadendron giganteum HOM05D000144 ORTHO05D023591 4.7e-09 66.2 36 80.6
Lsat_1_v5_gn_4_98601 Lactuca sativa HOM05D000144 ORTHO05D023591 1.1e-07 61.6 30 86.7


User provided reference genes

Program Settings