Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0704 Ceratophyllum demersum HOM05D006131 ORTHO05D008649 3.9e-176 621.3 305 100.0
Ca_21065_v3 Cicer arietinum L. HOM05D006131 ORTHO05D008649 1.2e-108 397.1 249 75.9
TAR627G0028 Trochodendron aralioides HOM05D006131 ORTHO05D008649 2.0e-108 396.4 246 77.6
Nitab4.5_0004743g0170 Nicotiana tabacum HOM05D006131 ORTHO05D008649 2.3e-107 392.9 246 76.8
Nn7g38008 Nelumbo nucifera HOM05D006131 ORTHO05D008649 3.9e-107 392.1 245 77.6
Nitab4.5_0001409g0150 Nicotiana tabacum HOM05D006131 ORTHO05D008649 3.9e-107 392.1 246 76.8
CANSAT56G3890 Cannabis sativa HOM05D006131 ORTHO05D008649 1.1e-106 390.6 246 76.0
Solyc02g080990.2 Solanum lycopersicum HOM05D006131 ORTHO05D008649 1.5e-106 390.2 246 77.2
Sopen02g025670 Solanum pennellii HOM05D006131 ORTHO05D008649 1.9e-106 389.8 246 77.2
Medtr4g132500 Medicago truncatula HOM05D006131 ORTHO05D008649 2.5e-106 389.4 246 75.2
TPR.G36994 Trifolium pratense HOM05D006131 ORTHO05D008649 3.3e-106 389.0 246 75.6
Glyma.07G263100 Glycine max HOM05D006131 ORTHO05D008649 4.3e-106 388.7 246 76.0
QL05p072288 Quercus lobata HOM05D006131 ORTHO05D008649 5.6e-106 388.3 243 77.8
ClCG01G021720 Citrullus lanatus HOM05D006131 ORTHO05D008649 1.2e-105 387.1 249 73.9
arahy.Tifrunner.gnm1.ann1.34DY78 Arachis hypogaea HOM05D006131 ORTHO05D008649 1.6e-105 386.7 246 75.2
VMungo1215G1261 Vigna mungo HOM05D006131 ORTHO05D008649 2.1e-105 386.3 245 76.3
Psat4g005600 Pisum sativum HOM05D006131 ORTHO05D008649 2.8e-105 386.0 246 74.8
CAN.G1014.35 Capsicum annuum HOM05D006131 ORTHO05D008649 4.7e-105 385.2 246 76.4
Cpa.g.sc152.47 Carica papaya HOM05D006131 ORTHO05D008649 6.2e-105 384.8 246 75.2
Sed0009561 Sechium edule HOM05D006131 ORTHO05D008649 8.0e-105 384.4 249 73.5
Hma1.2p1_0298F.1_g117540 Hydrangea macrophylla HOM05D006131 ORTHO05D008649 1.0e-104 384.0 246 75.2
Hma1.2p1_0298F.1_g117550 Hydrangea macrophylla HOM05D006131 ORTHO05D008649 1.0e-104 384.0 246 75.2
Potri.011G009600 Populus trichocarpa HOM05D006131 ORTHO05D008649 1.4e-104 383.6 243 76.1
Lalb_Chr07g0177101 Lupinus albus HOM05D006131 ORTHO05D008649 2.3e-104 382.9 246 74.4
Cfa000174 Carpinus fangiana HOM05D006131 ORTHO05D008649 4.0e-104 382.1 243 74.5
MBI07_g07142_MAGBIO Magnolia biondii HOM05D006131 ORTHO05D008649 5.2e-104 381.7 249 73.1
arahy.Tifrunner.gnm1.ann1.EVIY4K Arachis hypogaea HOM05D006131 ORTHO05D008649 6.8e-104 381.3 246 74.0
Sabra11G0007600 Salix brachista HOM05D006131 ORTHO05D008649 6.8e-104 381.3 243 75.7
EL10Ac8g20116 Beta vulgaris HOM05D006131 ORTHO05D008649 8.9e-104 380.9 243 75.3
Actinidia02346 Actinidia chinensis HOM05D006131 ORTHO05D008649 1.2e-103 380.6 247 74.1
CsaV3_6G048760 Cucumis sativus L. HOM05D006131 ORTHO05D008649 1.2e-103 380.6 249 72.7
GSVIVG01012668001 Vitis vinifera HOM05D006131 ORTHO05D008649 1.5e-103 380.2 243 74.9
Aqoxy1G03037 Aquilegia oxysepala HOM05D006131 ORTHO05D008649 2.6e-103 379.4 249 74.3
Lj4g0011530 Lotus japonicus HOM05D006131 ORTHO05D008649 2.6e-103 379.4 246 72.8
Prupe.4G016400 Prunus persica HOM05D006131 ORTHO05D008649 2.6e-103 379.4 246 73.6
THA.LOC104806315 Tarenaya hassleriana HOM05D006131 ORTHO05D008649 2.6e-103 379.4 246 74.8
Lj1C1234T13 Lonicera japonica HOM05D006131 ORTHO05D008649 4.4e-103 378.6 243 73.7
Aqoxy1G02886 Aquilegia oxysepala HOM05D006131 ORTHO05D008649 5.8e-103 378.3 249 73.9
Cc09_g01330 Coffea canephora HOM05D006131 ORTHO05D008649 5.8e-103 378.3 249 73.5
PSO541G3086 Papaver somniferum HOM05D006131 ORTHO05D008649 5.8e-103 378.3 272 70.6
MD10G1325600 Malus domestica HOM05D006131 ORTHO05D008649 7.5e-103 377.9 246 73.6
CSS0011000 Camellia sinensis var. sinensis HOM05D006131 ORTHO05D008649 9.8e-103 377.5 247 74.5
Duzib235G1477 Durio zibethinus HOM05D006131 ORTHO05D008649 9.8e-103 377.5 243 75.7
Gohir.A06G150500 Gossypium hirsutum HOM05D006131 ORTHO05D008649 2.2e-102 376.3 243 74.1
AUR62021912 Chenopodium quinoa HOM05D006131 ORTHO05D008649 2.9e-102 375.9 243 73.7
Hund21429 Selenicereus undatus HOM05D006131 ORTHO05D008649 6.4e-102 374.8 243 73.7
Gorai.010G183100 Gossypium raimondii HOM05D006131 ORTHO05D008649 8.3e-102 374.4 243 74.5
HanXRQChr16g0516961 Helianthus annuus HOM05D006131 ORTHO05D008649 1.1e-101 374.0 246 71.1
Manes.17G028300 Manihot esculenta HOM05D006131 ORTHO05D008649 1.1e-101 374.0 246 75.2
BolC3t15934H Brassica oleracea HOM05D006131 ORTHO05D008649 1.4e-101 373.6 246 72.0
Migut.M01378 Erythranthe guttata HOM05D006131 ORTHO05D008649 1.4e-101 373.6 243 73.3
Lsat_1_v5_gn_4_61541 Lactuca sativa HOM05D006131 ORTHO05D008649 1.9e-101 373.2 246 72.0
Zm00001eb334790 Zea mays HOM05D006131 ORTHO05D008649 1.9e-101 373.2 243 73.3
Ciclev10014171m.g Citrus clementina HOM05D006131 ORTHO05D008649 2.4e-101 372.9 246 73.2
Oeu051199.1 Olea europaea HOM05D006131 ORTHO05D008649 2.4e-101 372.9 243 72.8
Gohir.D06G156700 Gossypium hirsutum HOM05D006131 ORTHO05D008649 3.2e-101 372.5 243 74.1
TWI38G1228 Tripterygium wilfordii HOM05D006131 ORTHO05D008649 3.2e-101 372.5 245 72.2
CiPaw.09G096900 Carya illinoinensis HOM05D006131 ORTHO05D008649 4.1e-101 372.1 243 73.7
Sp6g04490 Schrenkiella parvula HOM05D006131 ORTHO05D008649 9.2e-101 370.9 246 72.0
C03p36250 Brassica napus HOM05D006131 ORTHO05D008649 1.2e-100 370.5 246 71.1
COL.COLO4_31819 Corchorus olitorius HOM05D006131 ORTHO05D008649 1.2e-100 370.5 243 74.1
Ah.09g234600 Amaranthus hybridus HOM05D006131 ORTHO05D008649 2.0e-100 369.8 246 73.2
AUR62012745 Chenopodium quinoa HOM05D006131 ORTHO05D008649 2.0e-100 369.8 243 73.3
SalBow8G4181 Salvia bowleyana HOM05D006131 ORTHO05D008649 3.5e-100 369.0 245 71.8
A03p29960 Brassica napus HOM05D006131 ORTHO05D008649 6.0e-100 368.2 246 71.5
BraA03t12185Z Brassica rapa HOM05D006131 ORTHO05D008649 6.0e-100 368.2 246 71.5
Thhalv10028396m.g Eutrema salsugineum HOM05D006131 ORTHO05D008649 6.0e-100 368.2 246 71.5
ECA234G4389 Erigeron canadensis HOM05D000006 ORTHO05D000091 7.8e-100 367.9 246 70.3
FvH4_3g01570 Fragaria vesca HOM05D006131 ORTHO05D008649 1.7e-99 366.7 245 72.2
Eucgr.E03997 Eucalyptus grandis HOM05D006131 ORTHO05D008649 3.0e-99 365.9 246 70.7
Os01g0120300 Oryza sativa ssp. japonica HOM05D006131 ORTHO05D008649 3.0e-99 365.9 243 71.6
unitig_748.g7594 Utricularia gibba HOM05D006131 ORTHO05D008649 3.0e-99 365.9 237 74.7
FAN25G2733 Fragaria x ananassa HOM05D006131 ORTHO05D008649 3.9e-99 365.5 245 71.8
Peaxi162Scf00178g00056 Petunia axillaris HOM05D006131 ORTHO05D008649 3.9e-99 365.5 246 72.8
Aqoxy1G02667 Aquilegia oxysepala HOM05D006131 ORTHO05D008649 6.6e-99 364.8 282 66.0
Carub.0006s3219 Capsella rubella HOM05D006131 ORTHO05D008649 6.6e-99 364.8 246 70.7
CARHR253090 Cardamine hirsuta HOM05D006131 ORTHO05D008649 8.6e-99 364.4 249 68.7
Haze_06845 Corylus avellana HOM05D006131 ORTHO05D008649 1.5e-98 363.6 279 65.2
vmacro03670 Vaccinium macrocarpon HOM05D006131 ORTHO05D008649 1.9e-98 363.2 246 72.0
Aa31LG9G9850 Aethionema arabicum HOM05D006131 ORTHO05D008649 2.5e-98 362.8 246 70.3
AT4G04350 Arabidopsis thaliana HOM05D006131 ORTHO05D008649 5.6e-98 361.7 246 69.5
PGR042G2674 Punica granatum HOM05D006131 ORTHO05D008649 7.3e-98 361.3 246 72.4
BcaB01g02598 Brassica carinata HOM05D006131 ORTHO05D008649 1.6e-97 360.1 242 70.7
AL6G47890 Arabidopsis lyrata HOM05D006131 ORTHO05D008649 2.1e-97 359.8 246 69.5
AL6G47902 Arabidopsis lyrata HOM05D006131 ORTHO05D008649 2.1e-97 359.8 246 69.5
DCAR_028357 Daucus carota HOM05D006131 ORTHO05D008649 1.4e-96 357.1 246 69.5
Nitab4.5_0004743g0060 Nicotiana tabacum HOM05D006131 ORTHO05D008649 1.8e-96 356.7 301 62.1
RcHm_v2.0_Chr5g0002381 Rosa chinensis HOM05D006131 ORTHO05D008649 4.0e-96 355.5 245 71.0
ATR0317G053 Amborella trichopoda HOM05D006131 ORTHO05D008649 3.7e-94 349.0 243 67.9
AagrBONN_evm.TU.Sc2ySwM_362.2691 Anthoceros agrestis HOM05D006131 ORTHO05D008649 3.6e-89 332.4 221 69.7
ATR0317G090 Amborella trichopoda HOM05D006131 ORTHO05D021223 1.1e-88 330.9 243 65.8
MELO3C007414.2 Cucumis melo HOM05D006131 ORTHO05D008649 4.4e-87 325.5 200 75.0
Rhsim13G0150700 Rhododendron simsii HOM05D006131 ORTHO05D008649 4.9e-86 322.0 197 77.2
Mapoly0024s0038 Marchantia polymorpha HOM05D006131 ORTHO05D008649 3.2e-85 319.3 249 61.0
Pp3c7_13710 Physcomitrium patens HOM05D006131 ORTHO05D008649 1.2e-84 317.4 239 64.0
CSS0007614 Camellia sinensis var. sinensis HOM05D006131 ORTHO05D008649 2.1e-81 306.6 254 63.8
SGA_v2.0_scaffold7G03775 Striga asiatica HOM05D006131 ORTHO05D008649 2.8e-81 306.2 245 61.6
CBR_g51980 Chara braunii HOM05D006131 ORTHO05D008649 1.4e-80 303.9 242 59.9
HPP92_003825 Vanilla planifolia HOM05D006131 ORTHO05D008649 1.3e-78 297.4 187 74.9
Cre13.g578451 Chlamydomonas reinhardtii HOM05D006131 ORTHO05D008649 2.1e-68 263.5 243 54.3
Atru.chr10.2271 Acer truncatum HOM05D000321 ORTHO05D008649 3.3e-66 256.1 219 59.4
PRCOL_00006602 Prasinoderma coloniale HOM05D006131 ORTHO05D008649 9.6e-66 254.6 247 52.2
Glyma.17G010750 Glycine max HOM05D006131 ORTHO05D008649 1.3e-65 254.2 229 56.8
Sc17g0007540 Simmondsia chinensis HOM05D006131 ORTHO05D008649 2.2e-62 243.4 153 75.2
MCO01G222 Micromonas commoda HOM05D006131 ORTHO05D008649 2.4e-56 223.4 213 52.1
Phvul.003G081300 Phaseolus vulgaris HOM05D006131 ORTHO05D008649 1.9e-50 203.8 127 74.0
SEGI_30887 Sequoiadendron giganteum HOM05D006131 ORTHO05D008649 3.8e-46 189.5 141 61.0
Thecc.06G226400 Theobroma cacao HOM05D006131 ORTHO05D008649 4.6e-44 182.6 142 66.9
Lj1A1234T51 Lonicera japonica HOM05D006131 ORTHO05D008649 3.6e-36 156.4 201 45.8
Oeu051886.1 Olea europaea HOM05D006131 ORTHO05D021223 2.6e-31 140.2 168 48.8
MD05G1351000 Malus domestica HOM05D006131 ORTHO05D021223 1.1e-26 124.8 92 67.4
SEGI_22271 Sequoiadendron giganteum HOM05D006131 ORTHO05D021223 9.1e-24 115.2 69 73.9
Aqoxy144s008 Aquilegia oxysepala HOM05D006131 ORTHO05D077905 1.2e-23 114.8 221 32.1
A03p29990 Brassica napus HOM05D006131 ORTHO05D021223 2.6e-23 113.6 103 58.3
Cfa023421 Carpinus fangiana HOM05D006131 ORTHO05D123919 4.2e-13 79.7 206 29.1
PRCOL_00006335 Prasinoderma coloniale HOM05D001392 ORTHO05D006407 6.3e-09 65.9 230 26.1
Cre07.g350500 Chlamydomonas reinhardtii HOM05D001392 ORTHO05D006407 4.5e-07 59.7 216 26.4
MD05G1351100 Malus domestica HOM05D006131 ORTHO05D008649 3.8e-06 56.6 54 50.0
HanXRQChr10g0283681 Helianthus annuus HOM05D001392 ORTHO05D006407 5.0e-06 56.2 208 26.4


User provided reference genes

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