Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0603 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 2.0e-95 352.4 183 100.0
CDE07G1719 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 2.9e-78 295.4 185 85.4
PSO339G0422 Papaver somniferum HOM05D003172 ORTHO05D003708 9.9e-34 147.5 201 46.8
TAR623G0379 Trochodendron aralioides HOM05D003172 ORTHO05D003708 6.4e-33 144.8 201 45.8
TWI32G0690 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 2.1e-31 139.8 195 47.7
MBI11_g10542_MAGBIO Magnolia biondii HOM05D003172 ORTHO05D003708 2.7e-31 139.4 174 51.1
PSO384G1776 Papaver somniferum HOM05D003172 ORTHO05D003708 1.3e-30 137.1 201 44.3
Dinv37006 Davidia involucrata HOM05D003172 ORTHO05D003708 2.3e-30 136.3 196 48.0
Manes.08G149400 Manihot esculenta HOM05D003172 ORTHO05D003708 3.9e-30 135.6 201 44.3
ClCG10G013300 Citrullus lanatus HOM05D003172 ORTHO05D003708 5.1e-30 135.2 204 45.6
Hma1.2p1_0183F.1_g080920 Hydrangea macrophylla HOM05D003172 ORTHO05D003708 2.5e-29 132.9 192 46.9
FAN04G3171 Fragaria x ananassa HOM05D003172 ORTHO05D003708 4.3e-29 132.1 203 46.8
Thecc.05G292800 Theobroma cacao HOM05D003172 ORTHO05D003708 4.3e-29 132.1 210 44.8
GSVIVG01033382001 Vitis vinifera HOM05D003172 ORTHO05D003708 5.6e-29 131.7 200 46.0
Sed0019950 Sechium edule HOM05D003172 ORTHO05D003708 7.4e-29 131.3 208 43.8
CSS0035842 Camellia sinensis var. sinensis HOM05D003172 ORTHO05D003708 1.3e-28 130.6 195 45.6
FAN18G2753 Fragaria x ananassa HOM05D003172 ORTHO05D003708 1.6e-28 130.2 204 46.6
COL.COLO4_13621 Corchorus olitorius HOM05D003172 ORTHO05D003708 2.8e-28 129.4 202 46.5
FvH4_5g18220 Fragaria vesca HOM05D003172 ORTHO05D003708 2.8e-28 129.4 204 46.1
MELO3C026894.2 Cucumis melo HOM05D003172 ORTHO05D003708 3.7e-28 129.0 211 44.1
Dinv14587 Davidia involucrata HOM05D003172 ORTHO05D003708 3.7e-28 129.0 198 45.5
Duzib177G0131 Durio zibethinus HOM05D003172 ORTHO05D003708 3.7e-28 129.0 201 45.3
Manes.09G142400 Manihot esculenta HOM05D003172 ORTHO05D003708 3.7e-28 129.0 207 43.0
Prupe.5G242100 Prunus persica HOM05D003172 ORTHO05D003708 3.7e-28 129.0 201 45.8
CsaV3_3G043330 Cucumis sativus L. HOM05D003172 ORTHO05D003708 6.2e-28 128.3 211 43.6
FAN13G1822 Fragaria x ananassa HOM05D003172 ORTHO05D003708 6.2e-28 128.3 204 45.6
CiPaw.09G000900 Carya illinoinensis HOM05D003172 ORTHO05D003708 8.1e-28 127.9 203 43.8
ATR0697G199 Amborella trichopoda HOM05D003172 ORTHO05D003708 1.1e-27 127.5 203 43.3
Gorai.013G123000 Gossypium raimondii HOM05D003172 ORTHO05D003708 1.1e-27 127.5 213 43.7
MD06G1237800 Malus domestica HOM05D003172 ORTHO05D003708 1.4e-27 127.1 200 46.0
MD14G1244600 Malus domestica HOM05D003172 ORTHO05D003708 1.4e-27 127.1 200 45.5
Actinidia30565 Actinidia chinensis HOM05D003172 ORTHO05D003708 1.8e-27 126.7 196 44.4
Duzib106G1828 Durio zibethinus HOM05D003172 ORTHO05D003708 1.8e-27 126.7 210 43.8
Gohir.A13G105600 Gossypium hirsutum HOM05D003172 ORTHO05D003708 4.0e-27 125.6 213 43.2
ATR0559G169 Amborella trichopoda HOM05D003172 ORTHO05D003708 5.3e-27 125.2 197 44.2
Cfa016432 Carpinus fangiana HOM05D003172 ORTHO05D003708 5.3e-27 125.2 210 43.3
Phvul.001G109300 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 5.3e-27 125.2 210 41.9
Potri.013G059800 Populus trichocarpa HOM05D003172 ORTHO05D003708 5.3e-27 125.2 198 42.4
Actinidia22095 Actinidia chinensis HOM05D003172 ORTHO05D003708 6.9e-27 124.8 196 43.4
Haze_19406 Corylus avellana HOM05D003172 ORTHO05D003708 6.9e-27 124.8 194 44.3
vmacro09149 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 6.9e-27 124.8 203 44.3
Potri.019G032800 Populus trichocarpa HOM05D003172 ORTHO05D003708 9.0e-27 124.4 198 43.9
Aqoxy2G00568 Aquilegia oxysepala HOM05D003172 ORTHO05D003708 1.5e-26 123.6 184 44.6
Gorai.007G287600 Gossypium raimondii HOM05D003172 ORTHO05D003708 1.5e-26 123.6 208 42.8
Gohir.A11G257900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 2.0e-26 123.2 209 42.6
FAN08G0762 Fragaria x ananassa HOM05D003172 ORTHO05D003708 3.4e-26 122.5 206 45.1
RcHm_v2.0_Chr7g0177371 Rosa chinensis HOM05D003172 ORTHO05D003708 4.5e-26 122.1 204 45.1
Gohir.D11G267900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 7.6e-26 121.3 200 43.5
Sc19g0006520 Simmondsia chinensis HOM05D003172 ORTHO05D003708 1.3e-25 120.6 193 45.6
Ciclev10018788m.g Citrus clementina HOM05D003172 ORTHO05D003708 2.2e-25 119.8 197 44.7
AUR62032669 Chenopodium quinoa HOM05D003172 ORTHO05D003708 2.9e-25 119.4 193 44.0
VMungo1383G1523 Vigna mungo HOM05D003172 ORTHO05D003708 8.4e-25 117.9 201 41.8
Oeu026879.1 Olea europaea HOM05D003172 ORTHO05D003708 1.1e-24 117.5 196 43.9
Phvul.004G079000 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 1.9e-24 116.7 196 38.8
Rhsim04G0086600 Rhododendron simsii HOM05D003172 ORTHO05D003708 1.9e-24 116.7 202 44.1
Lj2C357G5 Lonicera japonica HOM05D003172 ORTHO05D003708 3.2e-24 115.9 188 45.7
Nn7g35818 Nelumbo nucifera HOM05D003172 ORTHO05D003708 5.5e-24 115.2 198 41.4
Sed0012949 Sechium edule HOM05D003172 ORTHO05D003708 5.5e-24 115.2 210 43.3
DCAR_016860 Daucus carota HOM05D003172 ORTHO05D003708 9.3e-24 114.4 192 44.8
AUR62035298 Chenopodium quinoa HOM05D003172 ORTHO05D003708 1.6e-23 113.6 193 43.5
Ca_08256_v3 Cicer arietinum L. HOM05D003172 ORTHO05D003708 1.6e-23 113.6 200 41.0
Oeu035612.2 Olea europaea HOM05D003172 ORTHO05D003708 1.6e-23 113.6 205 42.9
TWI34G0902 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 2.7e-23 112.8 203 39.9
Atru.chr2.1341 Acer truncatum HOM05D003172 ORTHO05D003708 3.5e-23 112.5 212 41.5
Glyma.02G071300 Glycine max HOM05D003172 ORTHO05D003708 3.5e-23 112.5 203 38.9
Rhsim03G0000400 Rhododendron simsii HOM05D003172 ORTHO05D003708 3.5e-23 112.5 220 40.0
Lalb_Chr14g0364401 Lupinus albus HOM05D003172 ORTHO05D003708 4.6e-23 112.1 211 39.3
Atru.chr2.1318 Acer truncatum HOM05D003172 ORTHO05D003708 6.0e-23 111.7 214 41.1
DCAR_013693 Daucus carota HOM05D003172 ORTHO05D003708 6.0e-23 111.7 191 43.5
Lj1g0020713 Lotus japonicus HOM05D003172 ORTHO05D003708 1.3e-22 110.5 209 39.2
Hund24843 Selenicereus undatus HOM05D003172 ORTHO05D003708 3.9e-22 109.0 193 43.0
Migut.K00002 Erythranthe guttata HOM05D003172 ORTHO05D003708 6.7e-22 108.2 199 40.2
Migut.N01517 Erythranthe guttata HOM05D003172 ORTHO05D003708 6.7e-22 108.2 200 41.0
Medtr7g085350 Medicago truncatula HOM05D003172 ORTHO05D003708 8.7e-22 107.8 209 36.8
Migut.K00001 Erythranthe guttata HOM05D003172 ORTHO05D003708 1.1e-21 107.5 196 40.8
Glyma.16G152500 Glycine max HOM05D003172 ORTHO05D003708 1.1e-21 107.5 203 36.5
Nitab4.5_0003153g0030 Nicotiana tabacum HOM05D003172 ORTHO05D003708 1.1e-21 107.5 202 41.6
TPR.G5918 Trifolium pratense HOM05D003172 ORTHO05D003708 1.1e-21 107.5 209 37.8
TAR369G0048 Trochodendron aralioides HOM05D003172 ORTHO05D003708 1.1e-21 107.5 215 38.6
Nitab4.5_0000001g0360 Nicotiana tabacum HOM05D003172 ORTHO05D003708 2.5e-21 106.3 201 42.3
MSTRG.26061 Avicennia marina HOM05D003172 ORTHO05D003708 3.3e-21 105.9 199 42.2
Nn2g15889 Nelumbo nucifera HOM05D003172 ORTHO05D003708 3.3e-21 105.9 177 44.1
PGR142G1025 Punica granatum HOM05D003172 ORTHO05D003708 3.3e-21 105.9 195 41.5
Lalb_Chr21g0317121 Lupinus albus HOM05D003172 ORTHO05D003708 4.3e-21 105.5 203 37.4
Glyma.16G042600 Glycine max HOM05D003172 ORTHO05D003708 7.4e-21 104.8 212 39.2
Glyma.19G109500 Glycine max HOM05D003172 ORTHO05D003708 1.3e-20 104.0 225 36.4
Psat3g089480 Pisum sativum HOM05D003172 ORTHO05D003708 1.6e-20 103.6 203 39.4
THA.LOC104805751 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.1e-20 103.2 160 45.0
Zm00001eb218410 Zea mays HOM05D003172 ORTHO05D003708 2.8e-20 102.8 168 40.5
arahy.Tifrunner.gnm1.ann1.1H4ABR Arachis hypogaea HOM05D003172 ORTHO05D003708 4.8e-20 102.1 203 38.9
THA.LOC104805989 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 4.8e-20 102.1 163 44.2
arahy.Tifrunner.gnm1.ann1.74GIZX Arachis hypogaea HOM05D003172 ORTHO05D003708 6.2e-20 101.7 203 38.9
CANSAT78G1302 Cannabis sativa HOM05D003172 ORTHO05D003708 6.2e-20 101.7 202 40.6
arahy.Tifrunner.gnm1.ann1.WX09DK Arachis hypogaea HOM05D003172 ORTHO05D003708 8.2e-20 101.3 203 38.4
Peaxi162Scf00076g00918 Petunia axillaris HOM05D003172 ORTHO05D003708 8.2e-20 101.3 213 40.4
Sopen12g010260 Solanum pennellii HOM05D003172 ORTHO05D003708 8.2e-20 101.3 186 43.5
arahy.Tifrunner.gnm1.ann1.TX5S28 Arachis hypogaea HOM05D003172 ORTHO05D003708 1.1e-19 100.9 203 37.9
Solyc12g019860.2 Solanum lycopersicum HOM05D003172 ORTHO05D003708 1.8e-19 100.1 186 43.5
VMungo0464G1094 Vigna mungo HOM05D003172 ORTHO05D003708 1.8e-19 100.1 202 35.6
vmacro12579 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 2.4e-19 99.8 289 31.8
Cc06_g21440 Coffea canephora HOM05D003172 ORTHO05D003708 3.1e-19 99.4 201 42.8
EL10Ac3g06798 Beta vulgaris HOM05D003172 ORTHO05D003708 4.0e-19 99.0 193 40.4
CAN.G662.2 Capsicum annuum HOM05D003172 ORTHO05D003708 5.3e-19 98.6 189 41.8
QL07p020343 Quercus lobata HOM05D003172 ORTHO05D003708 9.0e-19 97.8 168 40.5
SGA_v2.0_scaffold94G28397 Striga asiatica HOM05D003172 ORTHO05D003708 1.2e-18 97.4 214 38.3
Sabra19G0041100 Salix brachista HOM05D003172 ORTHO05D003708 2.6e-18 96.3 235 34.5
HanXRQChr09g0252941 Helianthus annuus HOM05D003172 ORTHO05D003708 3.4e-18 95.9 177 41.2
Sp6g26090 Schrenkiella parvula HOM05D003172 ORTHO05D003708 1.7e-17 93.6 184 42.4
Zm00001eb052870 Zea mays HOM05D003172 ORTHO05D003708 1.7e-17 93.6 164 39.6
Lalb_Chr06g0173911 Lupinus albus HOM05D003172 ORTHO05D003708 2.9e-17 92.8 203 34.5
HPP92_013954 Vanilla planifolia HOM05D003172 ORTHO05D003708 2.9e-17 92.8 200 37.0
AL6G29440 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 3.8e-17 92.4 194 41.2
C03p10170 Brassica napus HOM05D003172 ORTHO05D003708 3.8e-17 92.4 166 43.4
BolC3t13502H Brassica oleracea HOM05D003172 ORTHO05D003708 3.8e-17 92.4 166 43.4
BraA03t10195Z Brassica rapa HOM05D003172 ORTHO05D003708 3.8e-17 92.4 166 43.4
BcaB01g05182 Brassica carinata HOM05D003172 ORTHO05D003708 4.9e-17 92.0 166 43.4
BcaNung04946 Brassica carinata HOM05D003172 ORTHO05D003708 4.9e-17 92.0 172 43.0
Os03g0652100 Oryza sativa ssp. japonica HOM05D003172 ORTHO05D003708 4.9e-17 92.0 169 39.1
ECA238G3293 Erigeron canadensis HOM05D003172 ORTHO05D003708 6.5e-17 91.7 180 40.0
CARHR217110 Cardamine hirsuta HOM05D003172 ORTHO05D003708 1.4e-16 90.5 135 47.4
Ah.04g153270 Amaranthus hybridus HOM05D003172 ORTHO05D003708 1.9e-16 90.1 191 37.2
AT5G18230 Arabidopsis thaliana HOM05D003172 ORTHO05D003708 1.9e-16 90.1 182 42.9
SGA_v2.0_scaffold274G46522 Striga asiatica HOM05D003172 ORTHO05D003708 5.5e-16 88.6 161 41.6
CARHR194830 Cardamine hirsuta HOM05D003172 ORTHO05D003708 9.3e-16 87.8 195 40.0
Thhalv10012672m.g Eutrema salsugineum HOM05D003172 ORTHO05D003708 9.3e-16 87.8 172 40.1
Lsat_1_v5_gn_2_57861 Lactuca sativa HOM05D003172 ORTHO05D003708 1.2e-15 87.4 188 39.9
Carub.0006s1651 Capsella rubella HOM05D003172 ORTHO05D003708 1.6e-15 87.0 186 40.3
BcaB08g36694 Brassica carinata HOM05D003172 ORTHO05D003708 1.0e-14 84.3 192 40.6
A03p08720 Brassica napus HOM05D003172 ORTHO05D003708 1.0e-14 84.3 185 38.4
HanXRQChr09g0266331 Helianthus annuus HOM05D003172 ORTHO05D003708 1.0e-14 84.3 196 38.3
BolC9t58717H Brassica oleracea HOM05D003172 ORTHO05D003708 8.7e-14 81.3 192 39.6
C09p58750 Brassica napus HOM05D003172 ORTHO05D003708 1.1e-13 80.9 189 39.7
Aa31LG11G11360 Aethionema arabicum HOM05D003172 ORTHO05D003708 1.5e-13 80.5 190 36.3
A10p21290 Brassica napus HOM05D003172 ORTHO05D003708 2.5e-13 79.7 180 39.4
BraA10t44192Z Brassica rapa HOM05D003172 ORTHO05D003708 3.3e-13 79.3 180 39.4
Lj5g0018859 Lotus japonicus HOM05D003172 ORTHO05D003708 1.3e-12 77.4 171 37.4
HanXRQChr14g0438971 Helianthus annuus HOM05D003172 ORTHO05D003708 1.6e-12 77.0 198 33.3
BcaC04g18714 Brassica carinata HOM05D003172 ORTHO05D003708 2.2e-12 76.6 195 37.9
THA.LOC104802864 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.2e-12 76.6 188 37.2
unitig_26.g9324 Utricularia gibba HOM05D003172 ORTHO05D003708 2.2e-12 76.6 204 35.8
Eucgr.A02083 Eucalyptus grandis HOM05D003172 ORTHO05D003708 6.3e-12 75.1 187 38.5
Mapoly0036s0115 Marchantia polymorpha HOM05D003172 ORTHO05D003708 1.8e-11 73.6 114 43.9
THA.LOC104801500 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 6.9e-11 71.6 53 67.9
THA.LOC104820736 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 1.3e-09 67.4 166 38.0
HanXRQChr07g0193171 Helianthus annuus HOM05D003172 ORTHO05D003708 1.9e-08 63.5 171 36.8
A03p08740 Brassica napus HOM05D003172 ORTHO05D003708 2.5e-08 63.2 66 57.6
Gohir.D13G109400 Gossypium hirsutum HOM05D003172 ORTHO05D003708 5.5e-08 62.0 189 33.9
Lsat_1_v5_gn_6_36740 Lactuca sativa HOM05D003172 ORTHO05D003708 1.6e-07 60.5 135 40.0
Lsat_1_v5_gn_7_105600 Lactuca sativa HOM05D003172 ORTHO05D003708 1.4e-06 57.4 52 63.5
unitig_736.g22311 Utricularia gibba HOM05D003172 ORTHO05D003708 1.8e-06 57.0 184 33.2


User provided reference genes

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