Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 4.7e-229 798.1 610 100.0
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 1.5e-203 713.4 448 93.5
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 4.4e-118 429.5 438 63.5
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 3.2e-113 413.3 438 66.7
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 9.4e-113 411.8 467 57.4
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 6.7e-111 405.6 418 63.2
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.0e-110 404.1 476 56.5
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.0e-110 404.1 476 56.5
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 3.1e-108 396.7 443 59.6
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 1.0e-106 391.7 439 48.1
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 9.4e-105 385.2 410 65.6
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 1.2e-104 384.8 440 61.6
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 3.6e-104 383.3 440 61.4
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 1.2e-102 378.3 440 58.9
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 1.5e-102 377.9 430 62.8
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 2.0e-102 377.5 434 62.2
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 2.0e-102 377.5 436 57.1
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.2e-101 374.0 365 63.8
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 1.1e-100 371.7 433 62.8
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 1.8e-100 370.9 436 56.9
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 1.8e-100 370.9 426 58.7
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 4.1e-100 369.8 438 61.2
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 5.4e-100 369.4 436 58.9
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 7.0e-100 369.0 452 56.4
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 1.2e-99 368.2 435 54.7
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 4.5e-99 366.3 431 60.1
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 4.5e-99 366.3 369 67.8
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 1.0e-98 365.2 446 59.9
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 1.3e-98 364.8 420 61.4
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 1.7e-98 364.4 434 56.9
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 2.2e-98 364.0 428 56.3
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 2.2e-98 364.0 428 58.4
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 3.8e-98 363.2 440 57.3
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 5.0e-98 362.8 435 55.6
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 8.5e-98 362.1 375 49.3
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 8.5e-98 362.1 368 65.8
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 1.1e-97 361.7 437 57.4
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 1.5e-97 361.3 373 66.8
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 1.5e-97 361.3 434 55.1
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 1.5e-97 361.3 428 58.2
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 3.2e-97 360.1 435 46.4
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 4.2e-97 359.8 373 66.5
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 9.4e-97 358.6 403 60.8
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 2.7e-96 357.1 358 68.4
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 4.7e-96 356.3 436 54.6
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 1.0e-95 355.1 367 63.8
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 1.0e-95 355.1 351 65.5
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 1.8e-95 354.4 435 55.4
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 1.8e-95 354.4 380 62.6
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 2.3e-95 354.0 434 59.4
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 2.3e-95 354.0 429 56.9
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 6.8e-95 352.4 351 66.1
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 6.8e-95 352.4 445 54.2
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 1.5e-94 351.3 429 56.9
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 3.4e-94 350.1 435 54.9
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 3.4e-94 350.1 428 55.8
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 4.4e-94 349.7 451 53.2
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 9.8e-94 348.6 359 63.8
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 3.7e-93 346.7 359 63.8
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 6.3e-93 345.9 351 58.1
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 6.3e-93 345.9 427 59.7
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 1.1e-92 345.1 470 48.7
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 1.4e-92 344.7 425 56.0
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 4.1e-92 343.2 360 60.3
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 7.0e-92 342.4 352 66.8
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 7.0e-92 342.4 352 66.8
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 2.7e-91 340.5 427 58.1
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 4.5e-91 339.7 427 54.1
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 1.0e-90 338.6 351 55.8
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 1.0e-90 338.6 379 63.3
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 1.3e-90 338.2 379 63.1
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 3.8e-90 336.7 353 66.0
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 5.0e-90 336.3 427 51.1
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.5e-89 334.7 427 54.6
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.9e-89 334.3 448 55.6
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 1.9e-89 334.3 331 69.8
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 2.5e-89 334.0 445 55.5
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 5.6e-89 332.8 427 48.2
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 5.6e-89 332.8 456 51.5
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 9.5e-89 332.0 448 51.1
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 1.2e-88 331.6 359 58.8
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 1.6e-88 331.3 442 43.7
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 4.7e-88 329.7 421 55.6
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 4.7e-88 329.7 382 60.7
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 8.0e-88 328.9 355 61.7
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 2.3e-87 327.4 331 63.4
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 3.0e-87 327.0 421 56.5
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 5.2e-87 326.2 404 52.5
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 6.8e-87 325.9 427 57.8
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 2.0e-86 324.3 323 64.4
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 4.4e-86 323.2 365 58.4
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 5.7e-86 322.8 422 55.2
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 5.7e-86 322.8 383 60.3
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 7.5e-86 322.4 360 63.3
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 2.2e-85 320.9 446 41.0
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 1.0e-82 312.0 422 50.2
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 3.0e-82 310.5 306 65.0
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 2.5e-81 307.4 350 60.3
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 2.1e-80 304.3 334 59.9
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 1.5e-78 298.1 395 54.9
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 1.9e-73 281.2 367 53.4
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 2.3e-66 257.7 165 72.7
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 2.5e-57 227.6 191 56.0
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 5.8e-54 216.5 318 42.8
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 7.8e-51 206.1 415 34.5
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 1.8e-39 168.3 375 41.1
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.4e-39 167.9 201 43.8
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 6.4e-37 159.8 378 41.8
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 1.1e-28 132.5 344 45.9
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 5.1e-26 123.6 373 43.4
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 1.3e-16 92.4 203 29.6
AT5G14350 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 1.2e-14 85.9 93 49.5
Actinidia05956 Actinidia chinensis HOM05D006844 ORTHO05D008504 6.5e-13 80.1 43 79.1
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 1.2e-11 75.9 144 34.7
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 3.9e-10 70.9 39 76.9
Pp3c2_12230 Physcomitrium patens HOM05D000001 ORTHO05D000003 1.3e-08 65.9 158 29.1
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 2.8e-08 64.7 156 25.0
Nn8g38827 Nelumbo nucifera HOM05D000001 ORTHO05D009948 1.8e-07 62.0 154 24.7
Lj4C777T5 Lonicera japonica HOM05D000001 ORTHO05D000003 6.9e-07 60.1 162 25.3
SMO169G0307 Selaginella moellendorffii HOM05D000001 ORTHO05D375726 9.1e-07 59.7 175 27.4
BcaB03g14475 Brassica carinata HOM05D004079 ORTHO05D005437 1.2e-06 59.3 151 25.2
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 2.0e-06 58.5 91 29.7
MD08G1148200 Malus domestica HOM05D000001 ORTHO05D000003 2.6e-06 58.2 153 28.8
Mapoly0059s0080 Marchantia polymorpha HOM05D001779 ORTHO05D023528 2.6e-06 58.2 161 32.3
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 3.4e-06 57.8 54 50.0
FvH4_3g36640 Fragaria vesca HOM05D000001 ORTHO05D000003 5.9e-06 57.0 104 30.8
Psat7g253880 Pisum sativum HOM05D000001 ORTHO05D009948 5.9e-06 57.0 152 23.0
SalBow4G0197 Salvia bowleyana HOM05D000001 ORTHO05D000003 5.9e-06 57.0 156 25.6


User provided reference genes

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