Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 0.0e+00 1437.9 719 100.0
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 1.0e-299 1033.1 722 69.5
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 1.6e-292 1009.2 721 68.9
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 2.3e-291 1005.4 723 68.2
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 2.6e-287 991.9 722 67.2
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.9e-285 985.7 723 66.4
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 1.2e-284 983.0 720 66.5
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 3.0e-283 978.4 727 65.7
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 3.9e-283 978.0 720 66.0
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.2e-281 973.0 724 66.2
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 3.6e-281 971.5 724 65.9
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 4.4e-279 964.5 720 65.0
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.7e-278 962.6 727 64.9
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 2.2e-278 962.2 727 65.5
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 4.6e-276 954.5 714 66.1
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 6.6e-275 950.7 715 64.5
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.9e-274 949.1 719 65.0
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 1.9e-274 949.1 719 64.0
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 1.2e-273 946.4 722 64.3
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 4.7e-273 944.5 722 64.3
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 7.8e-268 927.2 729 64.3
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 5.1e-267 924.5 722 63.0
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 2.5e-266 922.2 660 69.2
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 9.6e-266 920.2 733 62.8
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 9.6e-266 920.2 725 62.6
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 1.6e-265 919.5 722 63.3
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 6.2e-265 917.5 723 63.8
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 5.3e-264 914.4 723 63.5
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 6.9e-264 914.1 714 62.9
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 4.5e-263 911.4 734 61.7
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 8.4e-262 907.1 722 63.0
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.4e-261 906.4 713 61.9
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 2.1e-260 902.5 722 61.9
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 3.5e-260 901.7 722 62.6
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 7.9e-260 900.6 722 62.9
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.0e-259 900.2 724 61.7
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 3.9e-259 898.3 722 62.5
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.1e-258 896.7 714 61.9
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.1e-258 896.7 713 63.0
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.9e-258 896.0 712 62.9
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 4.3e-258 894.8 722 61.4
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 9.6e-258 893.6 724 61.2
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 1.3e-257 893.3 722 61.1
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 2.8e-257 892.1 726 60.7
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.4e-256 889.8 726 60.6
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.8e-256 889.4 714 62.0
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 4.0e-256 888.3 634 67.2
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 1.2e-255 886.7 722 61.1
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 7.6e-255 884.0 729 61.6
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 7.6e-255 884.0 728 60.4
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 9.9e-255 883.6 720 60.7
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 9.9e-255 883.6 728 61.0
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 9.9e-255 883.6 730 60.4
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.3e-254 883.2 720 60.7
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.3e-254 883.2 722 62.0
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.7e-254 882.9 727 60.9
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 2.9e-254 882.1 729 61.2
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 3.8e-254 881.7 732 59.7
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 6.4e-254 880.9 728 60.7
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.9e-253 879.4 710 61.1
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 1.9e-253 879.4 710 61.0
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 2.5e-253 879.0 722 60.1
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 4.2e-253 878.2 714 61.5
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 4.2e-253 878.2 726 60.9
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 2.7e-252 875.5 724 60.6
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.8e-251 872.8 726 60.3
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.8e-251 872.8 726 60.5
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 2.3e-251 872.5 720 61.5
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 1.3e-249 866.7 726 60.5
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 4.0e-248 861.7 739 58.6
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 4.5e-247 858.2 717 60.5
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.1e-245 853.6 722 59.3
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 1.4e-245 853.2 734 58.4
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 3.2e-245 852.0 660 63.0
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 5.5e-245 851.3 723 58.8
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 1.0e-243 847.0 726 58.3
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 3.3e-242 842.0 736 58.0
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 2.2e-241 839.3 722 58.4
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 4.8e-241 838.2 721 60.2
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.0e-238 830.5 589 67.7
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 9.7e-234 813.9 726 58.8
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 4.8e-233 811.6 543 70.5
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 4.8e-233 811.6 730 57.7
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.1e-232 808.9 990 47.1
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.3e-230 803.5 649 61.5
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 8.5e-230 800.8 710 58.2
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 3.2e-229 798.9 729 55.8
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 4.7e-228 795.0 590 65.1
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 2.3e-227 792.7 592 64.9
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 6.3e-225 784.6 587 64.9
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 4.1e-224 781.9 660 59.2
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.5e-223 780.0 716 57.0
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 4.7e-220 768.5 876 48.3
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.1e-216 757.3 567 64.0
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.4e-200 703.0 984 43.9
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 7.0e-184 648.3 737 47.2
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 3.5e-183 646.0 708 50.6
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.2e-175 620.9 453 65.6
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 2.2e-169 600.1 698 45.7
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 3.3e-157 559.7 488 57.2
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 7.1e-152 542.0 616 45.6
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 3.8e-145 519.6 363 68.0
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.6e-119 434.5 445 52.1
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 1.1e-117 428.3 379 57.5
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 8.8e-94 349.0 254 64.2
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 4.7e-87 326.6 254 62.2
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 1.0e-86 325.5 226 69.9
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 1.4e-75 288.5 291 53.3
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.9e-64 251.5 167 73.7
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 3.3e-64 250.8 267 50.2
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.2e-58 232.3 150 69.3
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 5.6e-56 223.4 275 45.8
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.6e-40 170.2 284 38.4
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.8e-36 157.5 214 42.1
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 7.1e-35 153.3 154 53.9
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.6e-34 152.1 285 36.1
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 6.9e-30 136.7 115 57.4
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 8.4e-28 129.8 170 40.0
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.7e-26 124.8 155 43.2
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 1.0e-25 122.9 85 68.2
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.3e-25 122.5 98 56.1
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 3.0e-25 121.3 83 68.7
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.5e-24 118.2 99 69.7
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 4.3e-24 117.5 83 67.5
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 9.0e-22 109.8 118 52.5
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 5.8e-21 107.1 109 51.4
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.1e-19 102.8 126 47.6
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 1.9e-19 102.1 72 69.4
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 4.2e-19 100.9 77 61.0
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 9.3e-19 99.8 101 57.4
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 6.0e-18 97.1 109 48.6
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.8e-17 95.5 109 47.7
CDE08G0658 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 8.7e-17 93.2 65 76.9
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 1.1e-16 92.8 627 22.0
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.5e-16 92.4 60 66.7
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 1.5e-16 92.4 88 53.4
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 1.6e-15 89.0 168 32.1
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.6e-15 89.0 100 48.0
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-15 88.2 241 30.7
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 2.8e-15 88.2 79 53.2
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.4e-14 85.9 52 69.2
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 3.4e-13 81.3 82 48.8
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.7e-12 79.0 45 82.2
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.9e-12 78.2 70 57.1
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 1.1e-11 76.3 58 56.9
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 4.2e-11 74.3 57 61.4
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 1.0e-09 69.7 57 59.6
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 1.0e-09 69.7 57 59.6
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 1.0e-09 69.7 46 63.0
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.3e-09 69.3 129 33.3
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 1.1e-08 66.2 57 57.9
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 6.3e-07 60.5 48 56.2
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 6.3e-07 60.5 351 20.8
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 2.4e-06 58.5 72 47.2
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 3.1e-06 58.2 53 54.7


User provided reference genes

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