Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 3.3e-65 251.5 125 100.0
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 9.1e-55 216.9 131 86.3
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 4.5e-54 214.5 129 85.3
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.5e-52 209.5 129 83.7
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 3.6e-51 204.9 129 82.9
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.0e-50 203.4 129 80.6
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.0e-50 203.4 129 80.6
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 1.0e-50 203.4 129 81.4
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.0e-50 203.4 129 81.4
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.0e-50 203.4 129 81.4
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.0e-50 203.4 129 79.1
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.4e-50 203.0 129 83.7
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.3e-50 202.2 126 81.7
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 2.3e-50 202.2 126 81.7
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 2.3e-50 202.2 126 81.7
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 3.0e-50 201.8 131 80.2
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 3.0e-50 201.8 129 80.6
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 5.2e-50 201.1 129 80.6
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 5.2e-50 201.1 128 80.5
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 8.8e-50 200.3 125 80.8
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.2e-49 199.9 129 79.1
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 2.0e-49 199.1 129 79.1
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.6e-49 198.7 129 78.3
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.6e-49 198.7 125 80.0
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 5.7e-49 197.6 129 79.1
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 7.5e-49 197.2 130 80.0
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 7.5e-49 197.2 126 80.2
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.3e-48 196.4 129 78.3
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.2e-48 195.7 129 79.8
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.2e-48 195.7 129 76.7
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 2.8e-48 195.3 129 79.1
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 3.7e-48 194.9 129 76.7
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 8.2e-48 193.7 129 78.3
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 1.1e-47 193.4 127 79.5
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 1.4e-47 193.0 120 80.8
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 1.4e-47 193.0 129 78.3
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 1.8e-47 192.6 130 77.7
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 1.8e-47 192.6 129 76.0
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 2.4e-47 192.2 124 78.2
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 3.1e-47 191.8 147 70.1
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 5.3e-47 191.0 120 80.0
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 5.3e-47 191.0 130 77.7
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 9.1e-47 190.3 124 76.6
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 9.1e-47 190.3 129 75.2
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.2e-46 189.9 129 76.7
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 1.6e-46 189.5 121 80.2
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 2.0e-46 189.1 124 77.4
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 2.7e-46 188.7 130 76.9
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 2.7e-46 188.7 124 77.4
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 2.7e-46 188.7 124 77.4
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 2.7e-46 188.7 129 76.0
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 3.5e-46 188.3 124 75.0
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 3.5e-46 188.3 124 75.8
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 3.5e-46 188.3 120 79.2
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 4.5e-46 188.0 130 76.2
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 7.7e-46 187.2 124 75.0
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 7.7e-46 187.2 125 77.6
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 7.7e-46 187.2 136 70.6
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.0e-45 186.8 130 76.2
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.3e-45 186.4 133 75.2
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.3e-45 186.4 124 75.8
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 2.2e-45 185.7 124 75.0
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 2.2e-45 185.7 130 76.2
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 2.9e-45 185.3 130 75.4
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 6.5e-45 184.1 124 75.0
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 1.1e-44 183.3 124 74.2
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 1.9e-44 182.6 121 76.9
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 3.2e-44 181.8 125 72.0
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 7.2e-44 180.6 124 73.4
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 9.4e-44 180.3 124 72.6
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 9.4e-44 180.3 127 72.4
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 1.2e-43 179.9 127 72.4
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 2.1e-43 179.1 124 75.0
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 2.1e-43 179.1 132 71.2
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 2.7e-43 178.7 167 61.1
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 3.6e-43 178.3 122 75.4
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 6.1e-43 177.6 120 75.0
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 6.1e-43 177.6 118 76.3
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 8.0e-43 177.2 124 71.8
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.4e-42 176.4 118 75.4
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 1.8e-42 176.0 130 71.5
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.3e-42 175.6 129 69.0
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 2.3e-42 175.6 134 67.9
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 2.3e-42 175.6 127 70.9
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 2.3e-42 175.6 109 81.7
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 4.0e-42 174.9 122 72.1
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 4.0e-42 174.9 124 71.0
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 4.0e-42 174.9 140 67.9
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 6.8e-42 174.1 118 75.4
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 6.8e-42 174.1 118 75.4
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 6.8e-42 174.1 118 74.6
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 1.5e-41 172.9 107 82.2
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.0e-41 172.6 120 72.5
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 2.0e-41 172.6 132 72.0
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 3.4e-41 171.8 122 73.8
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 5.7e-41 171.0 130 68.5
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 5.7e-41 171.0 127 68.5
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 7.5e-41 170.6 130 69.2
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 2.8e-40 168.7 130 68.5
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.4e-39 165.6 159 62.3
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 4.5e-38 161.4 100 81.0
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.7e-37 159.5 99 79.8
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 6.5e-37 157.5 170 52.9
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 1.1e-36 156.8 121 66.9
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.1e-36 156.8 113 70.8
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.5e-36 156.4 95 83.2
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 2.5e-36 155.6 97 79.4
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.2e-35 153.3 116 70.7
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 1.6e-35 152.9 104 74.0
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.6e-35 152.9 111 68.5
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 2.1e-35 152.5 125 64.0
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 2.1e-35 152.5 129 62.8
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 6.1e-35 151.0 129 58.1
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 6.1e-35 151.0 116 67.2
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 8.0e-35 150.6 110 66.4
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 8.0e-35 150.6 110 66.4
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.0e-34 150.2 105 68.6
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 1.4e-34 149.8 129 58.1
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.4e-34 149.8 120 63.3
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 1.4e-34 149.8 129 58.1
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 1.4e-34 149.8 129 58.1
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 1.4e-34 149.8 129 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.3e-34 149.1 115 64.3
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 2.3e-34 149.1 110 67.3
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.3e-34 149.1 109 67.0
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 4.0e-34 148.3 129 57.4
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 4.0e-34 148.3 127 60.6
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 6.8e-34 147.5 119 63.0
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 8.9e-34 147.1 92 81.5
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.7e-32 142.9 109 63.3
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 1.7e-32 142.9 96 75.0
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.2e-32 142.5 129 56.6
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 6.3e-32 141.0 162 51.9
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 6.3e-32 141.0 93 78.5
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.8e-31 139.4 120 61.7
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.2e-30 136.7 120 61.7
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 4.5e-30 134.8 87 78.2
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.7e-29 132.9 90 72.2
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 2.3e-29 132.5 101 65.3
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 2.1e-27 125.9 82 81.7
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.4e-26 123.2 106 60.4
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 6.8e-26 120.9 83 78.3
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 2.6e-25 119.0 117 58.1
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 5.4e-23 111.3 113 55.8
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 1.0e-21 107.1 61 85.2
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.3e-21 106.7 69 78.3
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.3e-21 105.9 63 79.4
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 5.0e-21 104.8 120 50.0
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 5.0e-21 104.8 75 70.7
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 4.3e-20 101.7 94 52.1
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.2e-19 100.1 95 57.9
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 6.2e-19 97.8 92 57.6
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 3.2e-15 85.5 112 38.4
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 1.2e-14 83.6 88 48.9
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.0e-13 79.0 52 78.8
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 1.5e-12 76.6 47 76.6
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 7.3e-12 74.3 115 39.1
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.4e-10 70.1 57 59.6
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 3.4e-09 65.5 38 84.2
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 2.4e-07 59.3 93 34.4


User provided reference genes

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