Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.3e-104 381.7 194 100.0
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 3.0e-44 182.6 152 58.6
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 3.0e-44 182.6 152 59.2
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.9e-43 179.9 152 57.9
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 2.5e-43 179.5 153 58.2
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.5e-43 179.5 152 57.2
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.5e-43 179.5 154 57.8
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.5e-43 179.5 154 57.8
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.5e-43 179.5 153 60.8
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.3e-43 178.7 152 57.2
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 4.3e-43 178.7 152 57.2
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 4.3e-43 178.7 152 57.9
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 4.3e-43 178.7 152 57.2
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.3e-43 178.7 154 57.1
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 4.3e-43 178.7 157 57.3
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 5.6e-43 178.3 152 57.2
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 5.6e-43 178.3 152 57.2
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 5.6e-43 178.3 230 47.0
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 7.3e-43 177.9 158 57.0
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 7.3e-43 177.9 158 57.0
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 7.3e-43 177.9 155 60.6
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 9.5e-43 177.6 226 46.0
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 9.5e-43 177.6 152 57.9
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.6e-42 176.8 155 58.7
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.6e-42 176.8 153 58.8
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.6e-42 176.8 154 57.1
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.1e-42 176.4 152 57.9
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 2.1e-42 176.4 152 55.9
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 2.1e-42 176.4 153 56.9
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.8e-42 176.0 153 58.2
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.8e-42 176.0 153 58.2
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 2.8e-42 176.0 153 56.9
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.8e-42 176.0 152 56.6
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 3.6e-42 175.6 205 48.3
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 3.6e-42 175.6 152 57.9
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 3.6e-42 175.6 152 55.9
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 4.7e-42 175.3 152 56.6
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 4.7e-42 175.3 152 56.6
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 6.2e-42 174.9 152 57.9
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 8.0e-42 174.5 156 55.8
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 1.0e-41 174.1 154 57.1
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 1.0e-41 174.1 152 54.6
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 1.0e-41 174.1 152 56.6
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.0e-41 174.1 153 56.2
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.0e-41 174.1 153 58.2
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.4e-41 173.7 152 56.6
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 1.4e-41 173.7 152 56.6
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.8e-41 173.3 152 55.3
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 2.3e-41 172.9 155 56.8
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.3e-41 172.9 152 55.3
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.3e-41 172.9 152 55.3
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.3e-41 172.9 152 55.3
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.3e-41 172.9 152 55.3
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.3e-41 172.9 152 55.3
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 3.1e-41 172.6 154 55.2
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.1e-41 172.6 154 55.8
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 3.1e-41 172.6 152 57.2
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 3.1e-41 172.6 228 44.3
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 3.1e-41 172.6 153 56.9
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 3.1e-41 172.6 152 55.3
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.0e-41 172.2 152 54.6
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 4.0e-41 172.2 218 45.0
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 4.0e-41 172.2 152 54.6
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.0e-41 172.2 152 55.3
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 4.0e-41 172.2 152 55.9
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 4.0e-41 172.2 152 55.3
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.2e-41 171.8 154 55.2
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 8.9e-41 171.0 230 44.8
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 8.9e-41 171.0 227 45.4
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.9e-41 171.0 154 55.2
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.2e-40 170.6 152 54.6
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.2e-40 170.6 152 54.6
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.2e-40 170.6 154 54.5
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 1.2e-40 170.6 163 57.1
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.2e-40 170.6 154 55.2
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 1.5e-40 170.2 152 54.6
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 2.0e-40 169.9 229 44.1
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 2.0e-40 169.9 158 56.3
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 2.0e-40 169.9 162 54.3
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 2.0e-40 169.9 153 55.6
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.0e-40 169.9 227 44.5
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 2.6e-40 169.5 155 56.1
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 2.6e-40 169.5 228 44.3
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 2.6e-40 169.5 158 55.7
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 3.4e-40 169.1 222 44.6
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 3.4e-40 169.1 229 43.7
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.4e-40 169.1 153 56.2
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.4e-40 169.1 153 56.2
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 4.4e-40 168.7 231 44.6
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 4.4e-40 168.7 228 43.9
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 4.4e-40 168.7 234 43.2
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.8e-40 168.3 154 55.2
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 7.5e-40 167.9 154 54.5
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 7.5e-40 167.9 135 58.5
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 7.5e-40 167.9 152 55.3
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.8e-40 167.5 154 55.2
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 9.8e-40 167.5 156 51.9
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 9.8e-40 167.5 153 54.2
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.3e-39 167.2 230 43.5
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 1.7e-39 166.8 221 43.9
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 1.7e-39 166.8 221 43.9
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 1.7e-39 166.8 153 54.9
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 1.7e-39 166.8 152 53.9
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.7e-39 166.8 153 55.6
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 1.7e-39 166.8 153 55.6
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 2.2e-39 166.4 221 43.9
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 2.2e-39 166.4 153 54.2
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 2.9e-39 166.0 221 43.9
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 2.9e-39 166.0 221 43.9
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 2.9e-39 166.0 221 43.9
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 2.9e-39 166.0 152 52.6
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 2.9e-39 166.0 153 54.2
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 3.7e-39 165.6 153 54.2
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 4.9e-39 165.2 221 43.4
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 4.9e-39 165.2 233 42.1
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 6.4e-39 164.9 221 43.4
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 6.4e-39 164.9 222 43.2
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.1e-38 164.1 227 44.1
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 1.4e-38 163.7 152 53.9
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 1.9e-38 163.3 153 52.3
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.4e-38 162.9 152 52.6
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 4.1e-38 162.2 229 41.9
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 4.1e-38 162.2 225 43.1
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 5.4e-38 161.8 158 52.5
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 9.2e-38 161.0 152 53.3
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.6e-37 160.2 158 52.5
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.3e-36 157.1 171 49.1
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 2.3e-36 156.4 139 57.6
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 7.3e-35 151.4 218 43.1
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.6e-34 150.2 152 57.2
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.5e-32 143.7 151 49.7
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 2.6e-32 142.9 152 48.0
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 2.2e-31 139.8 147 47.6
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 4.9e-31 138.7 153 47.1
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 1.2e-29 134.0 125 51.2
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 7.8e-29 131.3 154 44.8
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 1.1e-27 127.5 148 45.3
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.2e-26 124.0 282 31.6
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 3.1e-25 119.4 148 43.9
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 6.9e-17 91.7 83 53.0
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.5e-16 90.5 69 62.3
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.8e-16 88.6 164 36.6
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 9.9e-16 87.8 69 60.9
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.9e-15 86.3 83 48.2
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.3e-12 76.6 74 52.7
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 5.1e-12 75.5 150 30.7
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 7.3e-11 71.6 57 59.6
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 6.2e-10 68.6 51 60.8
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 8.1e-10 68.2 161 28.0
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 2.4e-09 66.6 126 32.5
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 5.3e-09 65.5 51 58.8
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 9.3e-06 54.7 39 56.4


User provided reference genes

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