Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 9.0e-104 380.2 182 100.0
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.2e-102 375.6 182 98.4
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 6.8e-75 284.3 181 75.1
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 2.0e-74 282.7 182 75.3
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 2.6e-74 282.3 182 76.4
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 7.5e-74 280.8 182 75.3
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 7.5e-74 280.8 183 72.7
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 7.5e-74 280.8 182 75.3
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.3e-73 280.0 182 74.7
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.2e-73 279.3 182 74.7
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.2e-73 279.3 182 73.1
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 2.8e-73 278.9 181 73.5
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 4.8e-73 278.1 181 72.9
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 8.3e-73 277.3 182 73.6
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.1e-72 276.9 182 74.7
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.4e-72 276.6 182 74.7
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 1.8e-72 276.2 184 75.0
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.4e-72 275.8 181 72.9
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 4.1e-72 275.0 181 74.0
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 4.1e-72 275.0 182 74.2
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 7.0e-72 274.2 181 73.5
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.0e-72 274.2 183 73.2
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.2e-71 273.5 185 74.1
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.6e-71 273.1 184 70.7
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.6e-71 273.1 184 72.8
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.6e-71 273.1 181 72.4
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.6e-71 273.1 183 74.3
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 2.0e-71 272.7 184 70.1
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 3.5e-71 271.9 182 73.1
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 4.5e-71 271.6 184 70.1
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.5e-71 271.6 182 74.2
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 5.9e-71 271.2 182 70.3
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.9e-71 271.2 182 74.7
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 5.9e-71 271.2 182 72.0
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 5.9e-71 271.2 182 73.1
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 5.9e-71 271.2 182 72.5
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.7e-71 270.8 181 72.4
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.0e-70 270.4 182 72.0
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.0e-70 270.4 182 72.5
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.0e-70 270.4 183 71.0
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.0e-70 270.4 181 71.8
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.3e-70 270.0 182 71.4
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.2e-70 269.2 181 71.8
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 2.2e-70 269.2 182 72.5
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 2.2e-70 269.2 183 71.6
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 2.9e-70 268.9 185 71.4
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 2.9e-70 268.9 181 71.3
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 2.9e-70 268.9 181 71.3
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.9e-70 268.9 182 70.3
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 3.8e-70 268.5 181 71.8
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 5.0e-70 268.1 181 72.4
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 5.0e-70 268.1 182 72.5
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 5.0e-70 268.1 181 72.4
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 8.5e-70 267.3 186 69.4
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 2.5e-69 265.8 181 70.7
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 2.5e-69 265.8 181 70.2
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 4.2e-69 265.0 184 70.1
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.2e-69 265.0 182 70.3
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 5.5e-69 264.6 181 69.1
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 9.4e-69 263.8 186 69.9
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 9.4e-69 263.8 186 69.9
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 9.4e-69 263.8 182 69.2
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.2e-68 263.5 182 72.5
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 1.2e-68 263.5 184 72.3
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 1.6e-68 263.1 189 68.8
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 1.6e-68 263.1 187 67.9
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 1.6e-68 263.1 187 67.9
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-68 263.1 183 71.0
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 1.6e-68 263.1 187 68.4
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 2.1e-68 262.7 183 69.4
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 2.1e-68 262.7 182 68.1
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 2.7e-68 262.3 184 72.3
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.7e-68 262.3 183 69.9
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.7e-68 262.3 184 69.0
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 3.6e-68 261.9 182 69.8
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 3.6e-68 261.9 183 72.1
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 1.0e-67 260.4 198 67.7
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.0e-67 260.4 182 71.4
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.4e-67 260.0 182 70.3
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.8e-67 259.6 182 69.8
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.2e-67 258.1 176 71.0
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.2e-67 258.1 177 71.2
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.2e-66 256.9 176 70.5
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.2e-66 256.9 182 68.1
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.2e-66 256.9 181 68.5
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.0e-66 256.1 182 67.0
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 3.4e-66 255.4 183 68.9
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 4.4e-66 255.0 182 67.6
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 4.4e-66 255.0 183 68.3
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 5.7e-66 254.6 182 65.9
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.7e-65 251.9 183 65.6
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 4.9e-65 251.5 183 66.7
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 6.3e-65 251.1 183 65.6
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.1e-64 250.4 183 67.2
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.8e-64 249.6 189 64.0
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 2.4e-64 249.2 183 65.6
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 3.1e-64 248.8 184 67.4
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 4.1e-64 248.4 184 64.1
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 5.4e-64 248.1 183 66.7
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.2e-63 246.9 183 65.0
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 2.7e-63 245.7 183 63.9
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 3.5e-63 245.4 187 65.2
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 3.5e-63 245.4 182 63.7
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 1.3e-62 243.4 183 65.0
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 6.6e-62 241.1 208 59.1
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 8.6e-62 240.7 193 60.6
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 8.6e-62 240.7 182 64.3
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 8.6e-62 240.7 185 64.3
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.1e-61 240.4 183 63.4
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.9e-61 239.6 183 63.9
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.9e-61 239.6 209 58.9
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.9e-61 239.6 209 58.9
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.9e-61 239.6 181 63.5
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.5e-61 239.2 183 63.4
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.5e-61 239.2 184 63.0
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 5.6e-61 238.0 181 63.5
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.6e-60 236.5 153 73.2
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.5e-55 218.8 165 63.6
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.0e-54 215.7 182 58.8
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.1e-53 213.8 181 56.9
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 1.1e-53 213.8 150 73.3
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 4.3e-53 211.8 212 53.3
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 6.2e-52 208.0 200 53.0
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 8.0e-52 207.6 153 65.4
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 8.9e-51 204.1 152 64.5
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 9.2e-48 194.1 205 51.7
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.7e-46 189.9 148 63.5
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.3e-46 189.5 153 64.1
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.6e-44 183.3 216 45.4
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 3.6e-44 182.2 182 51.1
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.1e-43 180.6 209 46.9
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.2e-42 177.2 195 46.2
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.4e-42 175.6 214 44.4
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 2.2e-41 172.9 164 54.9
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 2.9e-41 172.6 181 48.6
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 6.0e-39 164.9 147 56.5
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.0e-38 164.1 206 41.7
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 8.9e-35 151.0 149 56.4
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 5.8e-34 148.3 129 55.8
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 3.8e-33 145.6 88 80.7
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 4.6e-31 138.7 109 59.6
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 3.6e-28 129.0 180 37.8
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.4e-27 127.1 181 38.1
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 4.4e-26 122.1 146 47.3
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 9.3e-24 114.4 63 84.1
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.1e-21 107.5 173 34.7
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 4.8e-20 102.1 181 33.1
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.9e-11 71.6 39 92.3
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 4.2e-08 62.4 31 90.3
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 2.7e-07 59.7 31 87.1


User provided reference genes

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