Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.1e-126 456.8 252 100.0
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 8.4e-92 340.9 249 75.5
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 1.3e-79 300.4 253 68.4
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 1.2e-77 293.9 252 65.5
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.6e-77 292.7 255 65.5
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.8e-73 280.0 254 65.7
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.2e-63 246.5 252 57.1
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 4.5e-61 238.8 230 58.3
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 4.5e-61 238.8 241 58.5
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 5.9e-61 238.4 229 64.2
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 8.5e-60 234.6 241 59.3
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.1e-59 234.2 209 66.0
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.1e-59 234.2 246 58.9
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 1.4e-59 233.8 237 61.2
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.9e-59 233.4 246 54.5
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 2.5e-59 233.0 225 60.0
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 3.2e-59 232.6 229 57.6
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 4.2e-59 232.3 228 56.6
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 5.5e-59 231.9 250 56.0
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.5e-59 231.9 227 56.8
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 9.4e-59 231.1 245 53.5
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 9.4e-59 231.1 251 55.0
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.7e-58 229.6 230 56.5
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 2.7e-58 229.6 253 54.5
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 4.7e-58 228.8 240 58.3
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 6.1e-58 228.4 235 55.3
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 8.0e-58 228.0 216 60.2
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 2.3e-57 226.5 240 55.0
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.3e-57 226.5 196 62.8
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.1e-56 224.2 189 63.5
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 3.3e-56 222.6 238 56.7
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 7.4e-56 221.5 245 53.5
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 9.7e-56 221.1 252 52.8
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 9.7e-56 221.1 247 56.3
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 9.7e-56 221.1 230 53.5
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 9.7e-56 221.1 230 53.5
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 8.2e-55 218.0 188 68.1
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.1e-54 217.6 176 71.6
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.8e-54 216.9 250 55.6
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 2.4e-54 216.5 248 50.8
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 7.0e-54 214.9 200 58.5
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 1.6e-53 213.8 237 59.5
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 2.0e-53 213.4 257 51.8
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 2.0e-53 213.4 189 66.1
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 2.6e-53 213.0 196 57.7
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 1.0e-52 211.1 218 60.1
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 5.0e-52 208.8 219 54.8
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.1e-51 207.6 174 69.5
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.9e-51 206.8 187 62.6
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 3.2e-51 206.1 182 62.6
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 5.5e-51 205.3 247 53.0
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 7.2e-51 204.9 230 53.0
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 9.4e-51 204.5 178 68.0
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.2e-50 204.1 263 48.3
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 1.6e-50 203.8 229 50.2
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.6e-50 203.8 192 59.9
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 2.1e-50 203.4 197 62.4
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 2.7e-50 203.0 248 54.0
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 6.1e-50 201.8 182 63.2
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 8.0e-50 201.4 295 47.8
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 8.0e-50 201.4 165 64.2
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.0e-49 201.1 232 54.7
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.4e-49 200.7 238 58.0
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 2.3e-49 199.9 279 48.4
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 6.8e-49 198.4 279 48.0
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 6.8e-49 198.4 241 52.7
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.2e-48 197.6 187 62.6
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 2.0e-48 196.8 187 58.8
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 5.7e-48 195.3 293 49.1
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 9.7e-48 194.5 226 50.4
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.7e-47 193.7 165 66.1
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.7e-47 193.7 156 70.5
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 6.3e-47 191.8 201 56.2
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 6.3e-47 191.8 176 60.8
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 8.3e-47 191.4 199 52.3
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 1.4e-46 190.7 265 51.7
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.8e-46 190.3 182 64.3
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 3.1e-46 189.5 179 66.5
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 4.1e-46 189.1 179 60.9
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 4.1e-46 189.1 236 48.7
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 4.1e-46 189.1 262 50.4
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 5.3e-46 188.7 281 44.1
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 2.7e-45 186.4 240 50.8
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.7e-44 183.7 189 54.0
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 2.9e-44 183.0 211 57.3
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 5.0e-44 182.2 280 48.9
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 5.0e-44 182.2 237 49.8
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.5e-43 180.6 215 49.8
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 1.5e-43 180.6 189 60.8
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 1.9e-43 180.3 231 47.2
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 5.5e-43 178.7 183 59.0
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 5.5e-43 178.7 183 59.0
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 9.4e-43 177.9 219 47.9
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.6e-42 177.2 189 57.7
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 1.6e-42 177.2 195 57.4
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.6e-42 177.2 191 59.7
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 6.1e-42 175.3 184 57.1
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 1.8e-41 173.7 250 43.6
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 1.8e-41 173.7 260 44.6
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 6.8e-41 171.8 251 46.2
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 1.2e-40 171.0 129 68.2
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 1.5e-40 170.6 179 59.8
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 2.0e-40 170.2 237 47.7
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 4.4e-40 169.1 177 58.2
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 5.7e-40 168.7 238 45.8
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.7e-39 167.2 168 61.3
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 2.2e-39 166.8 165 57.0
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.8e-39 166.4 249 45.0
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 4.8e-39 165.6 232 51.7
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 6.3e-39 165.2 236 50.0
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 5.4e-38 162.2 168 59.5
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 7.0e-38 161.8 184 49.5
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 9.1e-38 161.4 230 49.6
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 2.0e-37 160.2 162 63.6
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 2.7e-37 159.8 249 46.6
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 5.9e-37 158.7 249 46.2
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.7e-36 157.1 239 44.8
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 3.8e-36 156.0 168 56.0
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 6.6e-36 155.2 130 65.4
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 8.6e-36 154.8 170 50.0
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 8.6e-36 154.8 236 42.8
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 8.6e-36 154.8 236 42.8
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.5e-35 154.1 239 44.4
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 7.2e-35 151.8 235 48.1
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.2e-32 144.4 278 42.1
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 8.3e-31 138.3 182 53.8
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 2.4e-30 136.7 173 50.3
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 2.0e-24 117.1 254 38.2
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 3.7e-23 112.8 176 46.0
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 8.3e-23 111.7 96 61.5
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 3.3e-19 99.8 188 40.4
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.5e-16 90.9 102 43.1
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 7.8e-13 78.6 134 36.6
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 6.6e-12 75.5 178 32.6
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 1.1e-09 68.2 73 53.4
Cre01.g024200 Chlamydomonas reinhardtii HOM05D004266 ORTHO05D005151 9.2e-06 55.1 98 30.6


User provided reference genes

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