Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2312 Ceratophyllum demersum HOM05D004250 ORTHO05D005264 8.2e-100 367.1 188 100.0
CSS0027583 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 6.3e-92 340.9 188 91.0
Dinv19634 Davidia involucrata HOM05D004250 ORTHO05D005264 1.1e-91 340.1 188 90.4
TAR626G0831 Trochodendron aralioides HOM05D004250 ORTHO05D005264 1.4e-91 339.7 188 91.0
Thecc.07G000400 Theobroma cacao HOM05D004250 ORTHO05D005264 2.4e-91 339.0 188 89.9
CSS0003988 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 4.1e-91 338.2 188 89.9
CSS0046656 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 4.1e-91 338.2 188 89.9
Gohir.D13G131400 Gossypium hirsutum HOM05D004250 ORTHO05D005264 5.3e-91 337.8 188 89.9
Gorai.013G147400 Gossypium raimondii HOM05D004250 ORTHO05D005264 5.3e-91 337.8 188 89.9
Atru.chr2.3911 Acer truncatum HOM05D004250 ORTHO05D005264 9.1e-91 337.0 188 89.4
GSVIVG01014869001 Vitis vinifera HOM05D004250 ORTHO05D005264 9.1e-91 337.0 188 89.9
TWI14G0209 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 1.2e-90 336.7 188 89.4
TWI39G0164 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 1.2e-90 336.7 188 89.4
Gohir.A13G127700 Gossypium hirsutum HOM05D004250 ORTHO05D005264 2.0e-90 335.9 188 89.4
CiPaw.11G211400 Carya illinoinensis HOM05D004250 ORTHO05D005264 3.4e-90 335.1 188 89.9
Manes.01G008500 Manihot esculenta HOM05D004250 ORTHO05D005264 4.5e-90 334.7 188 88.3
Oeu061794.1 Olea europaea HOM05D004250 ORTHO05D005264 4.5e-90 334.7 188 88.8
Manes.01G008200 Manihot esculenta HOM05D004250 ORTHO05D005264 5.9e-90 334.3 188 88.3
Cc05_g15830 Coffea canephora HOM05D004250 ORTHO05D005264 1.0e-89 333.6 188 89.4
Dinv42528 Davidia involucrata HOM05D004250 ORTHO05D005264 1.0e-89 333.6 188 89.4
Eucgr.F03640 Eucalyptus grandis HOM05D004250 ORTHO05D005264 1.3e-89 333.2 188 87.2
CAN.G943.20 Capsicum annuum HOM05D004250 ORTHO05D005264 1.7e-89 332.8 188 87.2
Potri.011G169900 Populus trichocarpa HOM05D004250 ORTHO05D005264 1.7e-89 332.8 188 89.4
TWI38G1388 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 1.7e-89 332.8 188 87.8
ECA240G3010 Erigeron canadensis HOM05D004250 ORTHO05D005264 2.2e-89 332.4 188 87.8
Solyc10g005660.3 Solanum lycopersicum HOM05D004250 ORTHO05D005264 2.2e-89 332.4 188 86.7
Sopen10g001630 Solanum pennellii HOM05D004250 ORTHO05D005264 2.2e-89 332.4 188 86.7
PGSC0003DMG400011272 Solanum tuberosum HOM05D004250 ORTHO05D005264 2.2e-89 332.4 188 86.7
Migut.M01574 Erythranthe guttata HOM05D004250 ORTHO05D005264 5.0e-89 331.3 188 87.8
HanXRQChr03g0076651 Helianthus annuus HOM05D004250 ORTHO05D005264 5.0e-89 331.3 188 87.2
MELO3C013230.2 Cucumis melo HOM05D004250 ORTHO05D005264 6.5e-89 330.9 188 88.3
CsaV3_7G021250 Cucumis sativus L. HOM05D004250 ORTHO05D005264 6.5e-89 330.9 188 88.3
SalBow8G0719 Salvia bowleyana HOM05D004250 ORTHO05D005264 6.5e-89 330.9 188 88.8
SGA_v2.0_scaffold7G03561 Striga asiatica HOM05D004250 ORTHO05D005264 6.5e-89 330.9 188 87.8
THA.LOC104811707 Tarenaya hassleriana HOM05D004250 ORTHO05D005264 8.5e-89 330.5 188 87.8
Ciclev10008979m.g Citrus clementina HOM05D004250 ORTHO05D005264 1.1e-88 330.1 188 87.8
Nn1g07611 Nelumbo nucifera HOM05D004250 ORTHO05D005264 1.1e-88 330.1 188 87.8
MSTRG.14533 Avicennia marina HOM05D004250 ORTHO05D005264 1.4e-88 329.7 188 87.8
MD03G1045500 Malus domestica HOM05D004250 ORTHO05D005264 1.9e-88 329.3 188 87.2
MD11G1047700 Malus domestica HOM05D004250 ORTHO05D005264 1.9e-88 329.3 188 87.2
Rhsim04G0006600 Rhododendron simsii HOM05D004250 ORTHO05D005264 1.9e-88 329.3 203 83.7
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 3.2e-88 328.6 182 89.6
SGA_v2.0_scaffold186G40229 Striga asiatica HOM05D004250 ORTHO05D005264 3.2e-88 328.6 188 87.2
Prupe.6G036800 Prunus persica HOM05D004250 ORTHO05D005264 4.2e-88 328.2 188 87.8
HanXRQChr13g0409281 Helianthus annuus HOM05D004250 ORTHO05D005264 7.2e-88 327.4 188 85.6
RcHm_v2.0_Chr5g0074261 Rosa chinensis HOM05D004250 ORTHO05D005264 7.2e-88 327.4 190 86.8
SEGI_37935 Sequoiadendron giganteum HOM05D004250 ORTHO05D005264 7.2e-88 327.4 188 85.6
Lj1A902T42 Lonicera japonica HOM05D004250 ORTHO05D005264 9.4e-88 327.0 188 87.2
unitig_46.g18525 Utricularia gibba HOM05D004250 ORTHO05D005264 9.4e-88 327.0 188 85.1
THA.LOC104817729 Tarenaya hassleriana HOM05D004250 ORTHO05D005264 1.2e-87 326.6 188 87.2
DCAR_016810 Daucus carota HOM05D004250 ORTHO05D005264 1.6e-87 326.2 188 85.6
PGR031G3775 Punica granatum HOM05D004250 ORTHO05D005264 2.1e-87 325.9 188 86.2
CANSAT11G0977 Cannabis sativa HOM05D004250 ORTHO05D005264 2.7e-87 325.5 188 86.2
FvH4_3g41360 Fragaria vesca HOM05D004250 ORTHO05D005264 3.6e-87 325.1 190 86.3
FAN25G1562 Fragaria x ananassa HOM05D004250 ORTHO05D005264 3.6e-87 325.1 190 86.3
FAN16G1338 Fragaria x ananassa HOM05D004250 ORTHO05D005264 7.9e-87 323.9 193 86.0
C09p47550 Brassica napus HOM05D004250 ORTHO05D005264 1.4e-86 323.2 188 85.6
Duzib268G1454 Durio zibethinus HOM05D004250 ORTHO05D005264 1.4e-86 323.2 188 86.7
Nitab4.5_0004488g0050 Nicotiana tabacum HOM05D004250 ORTHO05D005264 1.4e-86 323.2 188 85.6
Oeu052877.1 Olea europaea HOM05D004250 ORTHO05D005264 1.4e-86 323.2 188 86.7
Hund12926 Selenicereus undatus HOM05D004250 ORTHO05D005264 1.4e-86 323.2 188 86.7
A10p13550 Brassica napus HOM05D004250 ORTHO05D005264 1.8e-86 322.8 188 85.1
Sp6g18130 Schrenkiella parvula HOM05D004250 ORTHO05D005264 1.8e-86 322.8 188 85.6
Aqoxy3G04043 Aquilegia oxysepala HOM05D004250 ORTHO05D005264 2.3e-86 322.4 184 87.5
Peaxi162Scf00232g00910 Petunia axillaris HOM05D004250 ORTHO05D005264 3.9e-86 321.6 188 86.7
FAN21G3674 Fragaria x ananassa HOM05D004250 ORTHO05D005264 5.2e-86 321.2 190 85.3
BcaC04g20112 Brassica carinata HOM05D004250 ORTHO05D005264 8.8e-86 320.5 188 85.1
BolC9t57609H Brassica oleracea HOM05D004250 ORTHO05D005264 8.8e-86 320.5 188 85.1
BraA10t43459Z Brassica rapa HOM05D004250 ORTHO05D005264 1.1e-85 320.1 188 84.6
Actinidia37105 Actinidia chinensis HOM05D004250 ORTHO05D005264 1.5e-85 319.7 189 85.7
FAN11G0503 Fragaria x ananassa HOM05D004250 ORTHO05D005264 1.5e-85 319.7 193 85.0
PSO782G2166 Papaver somniferum HOM05D004250 ORTHO05D005264 1.5e-85 319.7 189 84.7
Nn2g14378 Nelumbo nucifera HOM05D004250 ORTHO05D005264 2.0e-85 319.3 188 86.2
Gorai.004G034800 Gossypium raimondii HOM05D004250 ORTHO05D005264 2.6e-85 318.9 188 86.2
Gohir.D08G036800 Gossypium hirsutum HOM05D004250 ORTHO05D005264 3.3e-85 318.5 188 85.6
Sabra11G0137100 Salix brachista HOM05D004250 ORTHO05D005264 4.4e-85 318.2 215 78.1
Sed0017579 Sechium edule HOM05D004250 ORTHO05D005264 7.4e-85 317.4 188 84.0
EL10Ac8g20543 Beta vulgaris HOM05D004250 ORTHO05D005264 9.7e-85 317.0 188 84.0
CARHR269680 Cardamine hirsuta HOM05D004250 ORTHO05D005264 9.7e-85 317.0 188 84.0
Gohir.A08G026400 Gossypium hirsutum HOM05D004250 ORTHO05D005264 9.7e-85 317.0 188 85.6
arahy.Tifrunner.gnm1.ann1.22L1JW Arachis hypogaea HOM05D004250 ORTHO05D005264 1.3e-84 316.6 188 84.6
arahy.Tifrunner.gnm1.ann1.LZ5KER Arachis hypogaea HOM05D004250 ORTHO05D005264 1.3e-84 316.6 188 84.6
PSO063G3722 Papaver somniferum HOM05D004250 ORTHO05D005264 1.3e-84 316.6 189 84.1
Glyma.04G115900 Glycine max HOM05D004250 ORTHO05D005264 1.7e-84 316.2 188 84.6
Carub.0008s1660 Capsella rubella HOM05D004250 ORTHO05D005264 2.2e-84 315.8 188 82.4
AL8G31910 Arabidopsis lyrata HOM05D004250 ORTHO05D005264 3.7e-84 315.1 188 83.5
Aa31LG3G12190 Aethionema arabicum HOM05D004250 ORTHO05D005264 6.3e-84 314.3 188 83.0
Glyma.06G320400 Glycine max HOM05D004250 ORTHO05D005264 6.3e-84 314.3 188 83.5
VMungo1080G0729 Vigna mungo HOM05D004250 ORTHO05D005264 1.1e-83 313.5 188 84.6
Zm00001eb034040 Zea mays HOM05D004250 ORTHO05D005264 1.4e-83 313.2 189 83.6
Os08g0500000 Oryza sativa ssp. japonica HOM05D004250 ORTHO05D005264 1.8e-83 312.8 189 83.1
AUR62014705 Chenopodium quinoa HOM05D004250 ORTHO05D005264 2.4e-83 312.4 188 82.4
Sp7g24340 Schrenkiella parvula HOM05D004250 ORTHO05D005264 2.4e-83 312.4 188 82.4
Zm00001eb199540 Zea mays HOM05D004250 ORTHO05D005264 5.3e-83 311.2 189 82.5
Lalb_Chr18g0048731 Lupinus albus HOM05D004250 ORTHO05D005264 7.0e-83 310.8 188 83.0
Thhalv10014144m.g Eutrema salsugineum HOM05D004250 ORTHO05D005264 9.1e-83 310.5 188 83.5
AT5G56280 Arabidopsis thaliana HOM05D004250 ORTHO05D005264 1.2e-82 310.1 188 82.4
Lj3g0022167 Lotus japonicus HOM05D004250 ORTHO05D005264 1.2e-82 310.1 188 83.0
AT4G26430 Arabidopsis thaliana HOM05D004250 ORTHO05D005264 2.6e-82 308.9 188 81.4
Phvul.005G006100 Phaseolus vulgaris HOM05D004250 ORTHO05D005264 2.6e-82 308.9 188 83.5
Ca_14123_v3 Cicer arietinum L. HOM05D004250 ORTHO05D005264 4.5e-82 308.1 188 83.0
C01p22290 Brassica napus HOM05D004250 ORTHO05D005264 1.0e-81 307.0 188 80.9
Psat5g231040 Pisum sativum HOM05D004250 ORTHO05D005264 1.0e-81 307.0 187 82.9
BcaNung02419 Brassica carinata HOM05D004250 ORTHO05D005264 1.3e-81 306.6 188 80.9
AUR62012490 Chenopodium quinoa HOM05D004250 ORTHO05D005264 1.3e-81 306.6 196 79.6
Medtr3g009270 Medicago truncatula HOM05D004250 ORTHO05D005264 1.3e-81 306.6 188 82.4
Carub.0007s1450 Capsella rubella HOM05D004250 ORTHO05D005264 1.7e-81 306.2 188 79.8
Lsat_1_v5_gn_9_88440 Lactuca sativa HOM05D004250 ORTHO05D005264 1.7e-81 306.2 185 82.7
BcaC09g50705 Brassica carinata HOM05D004250 ORTHO05D005264 3.8e-81 305.1 188 80.3
A01p17650 Brassica napus HOM05D004250 ORTHO05D005264 3.8e-81 305.1 188 80.3
BolC1t02162H Brassica oleracea HOM05D004250 ORTHO05D005264 3.8e-81 305.1 188 80.3
BraA01t01720Z Brassica rapa HOM05D004250 ORTHO05D005264 6.5e-81 304.3 188 80.3
Thhalv10025688m.g Eutrema salsugineum HOM05D004250 ORTHO05D005264 8.5e-81 303.9 188 79.8
Pp3c14_22830 Physcomitrium patens HOM05D004250 ORTHO05D005264 1.1e-80 303.5 188 79.3
Mapoly0151s0043 Marchantia polymorpha HOM05D004250 ORTHO05D005264 1.5e-80 303.1 189 76.7
AL7G26520 Arabidopsis lyrata HOM05D004250 ORTHO05D005264 2.5e-80 302.4 189 79.4
Lalb_Chr04g0259411 Lupinus albus HOM05D004250 ORTHO05D005264 2.7e-79 298.9 188 80.9
DCAR_013752 Daucus carota HOM05D004250 ORTHO05D005264 3.6e-79 298.5 204 74.5
vmacro09793 Vaccinium macrocarpon HOM05D004250 ORTHO05D005264 6.1e-79 297.7 281 60.1
Aa31LG5G11770 Aethionema arabicum HOM05D004250 ORTHO05D005264 1.4e-78 296.6 195 77.4
Cpa.g.sc12.53 Carica papaya HOM05D004250 ORTHO05D005264 3.3e-77 292.0 161 92.5
BcaC06g32749 Brassica carinata HOM05D004250 ORTHO05D005264 8.2e-76 287.3 182 79.7
QL08p000150 Quercus lobata HOM05D004250 ORTHO05D005264 1.4e-75 286.6 308 54.5
BcaNung02422 Brassica carinata HOM05D004250 ORTHO05D005264 5.3e-75 284.6 182 79.1
BolC7t45977H Brassica oleracea HOM05D004250 ORTHO05D005264 1.2e-74 283.5 182 78.0
BraA03t14739Z Brassica rapa HOM05D004250 ORTHO05D005264 1.2e-74 283.5 182 78.0
A03p56690 Brassica napus HOM05D004250 ORTHO05D005264 2.7e-74 282.3 182 78.0
CBR_g38485 Chara braunii HOM05D004250 ORTHO05D005264 2.7e-74 282.3 188 73.4
SMO367G0766 Selaginella moellendorffii HOM05D004250 ORTHO05D005264 2.2e-73 279.3 188 73.9
AagrBONN_evm.TU.Sc2ySwM_362.2287 Anthoceros agrestis HOM05D004250 ORTHO05D005264 2.5e-72 275.8 192 74.5
Nitab4.5_0001235g0020 Nicotiana tabacum HOM05D004250 ORTHO05D005264 5.5e-72 274.6 188 76.6
Hma1.2p1_0193F.1_g084430 Hydrangea macrophylla HOM05D004250 ORTHO05D005264 4.7e-71 271.6 214 67.3
Actinidia35441 Actinidia chinensis HOM05D004250 ORTHO05D005264 1.4e-70 270.0 162 85.2
C07p54890 Brassica napus HOM05D004250 ORTHO05D005264 4.0e-70 268.5 207 68.1
Duzib170G0346 Durio zibethinus HOM05D004250 ORTHO05D005264 2.4e-67 259.2 143 90.2
TPR.G16718 Trifolium pratense HOM05D004250 ORTHO05D005264 7.7e-66 254.2 188 70.7
ATR0751G160 Amborella trichopoda HOM05D004250 ORTHO05D005264 1.0e-65 253.8 142 90.1
Sc03g0011830 Simmondsia chinensis HOM05D004250 ORTHO05D005264 8.6e-65 250.8 142 88.7
Sed0022093 Sechium edule HOM05D004250 ORTHO05D005264 1.6e-63 246.5 161 80.7
Actinidia33520 Actinidia chinensis HOM05D004250 ORTHO05D005264 2.6e-61 239.2 186 69.9
CARHR233990 Cardamine hirsuta HOM05D004250 ORTHO05D005264 4.4e-61 238.4 142 84.5
Nitab4.5_0000294g0190 Nicotiana tabacum HOM05D004250 ORTHO05D005264 1.3e-57 226.9 188 64.9
Nitab4.5_0000611g0160 Nicotiana tabacum HOM05D004250 ORTHO05D005264 3.0e-54 215.7 188 61.2
RcHm_v2.0_Chr5g0075511 Rosa chinensis HOM05D004250 ORTHO05D005264 5.2e-46 188.3 134 73.9
Haze_09928 Corylus avellana HOM05D004250 ORTHO05D005264 4.4e-45 185.3 142 71.8
Cre11.g467647 Chlamydomonas reinhardtii HOM05D004250 ORTHO05D005264 2.6e-37 159.5 188 46.3
PRCOL_00003462 Prasinoderma coloniale HOM05D004250 ORTHO05D005264 1.7e-33 146.7 172 44.8
ClCG09G021790 Citrullus lanatus HOM05D004250 ORTHO05D005264 1.1e-32 144.1 77 92.2
HPP92_017857 Vanilla planifolia HOM05D007635 ORTHO05D009612 5.6e-24 115.2 101 63.4
Haze_09926 Corylus avellana HOM05D004250 ORTHO05D009612 1.3e-15 87.4 50 80.0
AUR62042211 Chenopodium quinoa HOM05D004250 ORTHO05D005264 4.0e-14 82.4 45 86.7
Pp3c17_21990 Physcomitrium patens HOM05D004250 ORTHO05D005264 6.4e-12 75.1 61 60.7
Os12g0622900 Oryza sativa ssp. japonica HOM05D004250 ORTHO05D005264 8.4e-12 74.7 69 55.1
Cre11.g467645 Chlamydomonas reinhardtii HOM05D004250 ORTHO05D005264 8.7e-09 64.7 94 39.4
Ah.09g236430 Amaranthus hybridus HOM05D004250 ORTHO05D005264 3.3e-08 62.8 37 83.8
Os12g0621900 Oryza sativa ssp. japonica HOM05D004250 ORTHO05D005264 1.3e-07 60.8 63 54.0
Gohir.D13G226300 Gossypium hirsutum HOM05D004250 ORTHO05D014651 4.0e-06 55.8 32 81.2


User provided reference genes

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