Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 0.0e+00 1144.8 641 100.0
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 3.1e-199 699.1 669 63.2
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 3.4e-190 669.1 663 59.1
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.3e-189 667.2 662 62.1
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 5.5e-188 661.8 648 60.5
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.1e-185 654.1 665 61.5
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 3.3e-185 652.5 673 63.0
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.7e-184 650.2 658 59.4
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.1e-183 647.5 665 61.1
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 5.9e-182 641.7 666 59.6
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 7.7e-182 641.3 664 59.9
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.0e-181 641.0 665 59.1
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.7e-181 640.2 672 59.4
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 3.8e-181 639.0 657 60.3
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 5.0e-181 638.6 666 59.6
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-180 637.5 669 59.3
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 1.4e-180 637.1 667 59.8
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 3.2e-180 636.0 664 59.0
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 4.2e-180 635.6 663 59.3
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 4.2e-180 635.6 667 59.5
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.5e-180 635.2 669 59.2
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 7.2e-180 634.8 664 60.8
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 9.4e-180 634.4 670 61.0
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.2e-179 634.0 665 58.3
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-179 633.6 669 59.0
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.1e-179 633.3 668 59.1
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 2.7e-179 632.9 675 56.9
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 4.7e-179 632.1 673 59.4
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 6.1e-179 631.7 669 58.9
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.4e-178 630.6 670 59.7
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 6.7e-178 628.2 668 59.1
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 8.8e-178 627.9 666 59.5
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 2.2e-176 623.2 664 59.0
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 2.2e-176 623.2 664 58.3
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.8e-176 622.9 666 57.2
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 6.3e-176 621.7 669 59.3
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.4e-175 620.5 660 58.6
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 1.8e-175 620.2 675 59.9
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 1.8e-175 620.2 663 56.0
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.1e-175 619.0 669 58.3
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 7.0e-175 618.2 665 58.0
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 9.1e-175 617.8 656 60.4
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.2e-174 617.5 667 59.5
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 2.0e-174 616.7 664 59.6
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 2.0e-174 616.7 664 59.6
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 3.4e-174 615.9 659 62.4
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 5.9e-174 615.1 665 58.0
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 7.7e-174 614.8 664 57.8
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.3e-173 614.0 660 57.9
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.3e-173 614.0 659 62.2
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.3e-173 614.0 669 58.6
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 6.5e-173 611.7 659 58.7
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 6.5e-173 611.7 664 58.1
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 2.5e-172 609.8 657 56.5
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 3.2e-172 609.4 659 56.0
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.1e-171 606.7 642 57.0
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 4.7e-171 605.5 659 56.1
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 3.9e-170 602.4 659 58.1
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 6.7e-170 601.7 657 55.9
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.1e-169 600.9 664 58.9
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 2.6e-169 599.7 658 56.2
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 9.7e-169 597.8 664 54.4
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 9.7e-169 597.8 669 58.6
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 9.7e-169 597.8 666 56.3
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.2e-168 596.7 661 57.8
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.1e-167 594.3 658 55.6
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 7.0e-167 591.7 657 58.1
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 7.0e-167 591.7 660 54.8
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.0e-166 590.1 655 57.1
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.5e-166 589.3 659 55.7
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 5.9e-166 588.6 669 58.7
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.0e-165 587.8 663 53.5
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 3.8e-165 585.9 652 59.0
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 6.5e-165 585.1 662 53.6
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 6.5e-165 585.1 656 55.3
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 8.5e-165 584.7 659 54.9
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-164 583.6 664 53.6
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-164 583.6 662 53.6
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 3.2e-164 582.8 657 56.3
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 3.6e-163 579.3 652 56.9
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 3.6e-163 579.3 655 53.3
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 4.7e-163 578.9 606 56.1
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 6.1e-163 578.6 645 54.7
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 8.0e-163 578.2 660 55.8
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 8.0e-163 578.2 660 55.8
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.8e-162 577.0 654 54.0
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 1.8e-162 577.0 651 55.6
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 5.2e-162 575.5 667 56.2
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 6.7e-162 575.1 654 53.5
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 3.3e-161 572.8 659 53.1
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 7.5e-161 571.6 653 54.4
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 7.5e-161 571.6 657 54.0
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 9.7e-161 571.2 653 54.2
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.2e-160 570.1 662 53.9
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 8.2e-160 568.2 657 55.9
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.8e-159 567.0 695 54.7
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 3.1e-159 566.2 662 52.9
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 4.1e-159 565.8 661 53.1
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 4.1e-159 565.8 533 63.2
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 9.1e-159 564.7 666 54.2
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.6e-158 563.9 661 53.1
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 5.9e-158 562.0 674 54.0
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 7.7e-158 561.6 653 54.1
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.0e-157 561.2 656 51.5
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 5.0e-157 558.9 664 51.7
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-156 557.0 658 51.4
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 2.5e-156 556.6 670 52.5
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 3.2e-156 556.2 661 54.9
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 3.2e-156 556.2 666 53.6
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 8.0e-155 551.6 662 52.7
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 4.0e-154 549.3 656 50.9
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.2e-153 547.7 643 51.9
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.5e-153 547.4 660 54.7
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.5e-153 547.4 552 59.6
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.5e-153 547.4 552 59.6
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.3e-152 544.3 664 52.3
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.3e-152 544.3 658 54.4
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.8e-152 543.1 670 53.1
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.8e-152 542.3 650 52.8
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.1e-151 539.7 662 51.7
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.2e-150 537.7 655 54.5
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 4.5e-150 535.8 662 50.3
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.9e-148 530.4 668 48.4
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.2e-148 529.3 662 49.4
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 4.2e-148 529.3 663 50.1
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.2e-147 527.7 567 55.0
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.2e-147 527.7 660 52.7
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 3.0e-146 523.1 646 52.6
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.0e-146 522.7 634 57.4
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 4.0e-146 522.7 560 57.5
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.9e-146 521.5 628 54.5
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 8.9e-146 521.5 657 51.3
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 8.9e-146 521.5 658 52.1
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 3.4e-145 519.6 657 49.9
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.8e-144 516.5 654 50.9
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 2.4e-143 513.5 667 48.9
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 2.9e-141 506.5 661 49.9
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.5e-140 504.2 675 48.4
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.3e-140 502.7 681 50.1
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.6e-139 500.7 669 47.1
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 4.0e-138 496.1 671 48.7
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.2e-137 494.6 642 49.8
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 9.8e-137 491.5 654 52.4
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 7.3e-132 475.3 651 48.7
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 3.6e-131 473.0 668 47.2
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 9.8e-129 464.9 609 48.9
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 9.2e-127 458.4 654 46.5
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 2.7e-126 456.8 530 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 3.3e-124 449.9 656 43.9
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.1e-122 444.9 611 45.7
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.6e-94 351.3 667 40.9
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.5e-92 344.0 548 43.8
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.4e-87 328.2 422 50.5
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 2.5e-87 327.4 648 40.3
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 3.0e-85 320.5 406 54.4
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 1.5e-81 308.1 405 52.1
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.9e-80 303.9 403 51.9
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 4.3e-76 290.0 232 69.8
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 2.9e-72 277.3 264 58.0
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.0e-69 268.9 302 53.0
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 5.9e-65 253.1 633 36.5
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.0e-64 252.3 351 44.2
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 4.8e-59 233.4 638 34.8
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 4.1e-50 203.8 273 45.4
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 9.1e-34 149.4 218 54.6
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 4.4e-28 130.6 77 80.5
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.3e-27 129.0 155 49.7
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 4.1e-26 124.0 113 54.9
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.0e-25 121.7 106 57.5
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 4.7e-22 110.5 77 71.4
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 5.2e-21 107.1 391 26.1
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 9.8e-20 102.8 78 66.7
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 6.4e-19 100.1 74 67.6
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 7.3e-15 86.7 263 25.9
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 8.1e-14 83.2 58 65.5
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 5.2e-13 80.5 61 67.2
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 3.4e-12 77.8 126 46.8
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 5.8e-12 77.0 404 25.5
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 6.6e-08 63.5 75 52.0
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 3.3e-07 61.2 395 22.8


User provided reference genes

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