Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1644 Ceratophyllum demersum HOM05D000361 ORTHO05D007313 2.5e-95 352.1 174 100.0
MBI10_g21116_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D007313 7.6e-76 287.3 166 80.7
Nn3g20692 Nelumbo nucifera HOM05D000361 ORTHO05D007313 9.3e-74 280.4 173 76.3
TAR626G0055 Trochodendron aralioides HOM05D000361 ORTHO05D007313 9.3e-74 280.4 173 77.5
PSO541G6449 Papaver somniferum HOM05D000361 ORTHO05D007313 7.4e-71 270.8 174 74.1
PSO675G5964 Papaver somniferum HOM05D000361 ORTHO05D007313 7.4e-71 270.8 174 74.1
HPP92_019175 Vanilla planifolia HOM05D000106 ORTHO05D001887 4.1e-69 265.0 173 71.7
GSVIVG01021426001 Vitis vinifera HOM05D000361 ORTHO05D007313 1.2e-68 263.5 173 69.9
Aqoxy1G01748 Aquilegia oxysepala HOM05D000361 ORTHO05D007313 3.4e-68 261.9 173 70.5
Glyma.05G129700 Glycine max HOM05D000361 ORTHO05D007313 3.4e-68 261.9 173 72.3
Os05g0476200 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D007313 4.5e-68 261.5 173 71.1
Glyma.08G084400 Glycine max HOM05D000361 ORTHO05D007313 1.0e-67 260.4 173 71.1
Sc17g0004990 Simmondsia chinensis HOM05D000361 ORTHO05D007313 1.0e-67 260.4 174 70.1
Zm00001eb290510 Zea mays HOM05D000361 ORTHO05D007313 1.7e-67 259.6 173 69.4
Zm00001eb351990 Zea mays HOM05D000361 ORTHO05D007313 1.7e-67 259.6 173 69.4
SEGI_24709 Sequoiadendron giganteum HOM05D000361 ORTHO05D007313 2.2e-67 259.2 173 69.9
SEGI_26759 Sequoiadendron giganteum HOM05D000361 ORTHO05D007313 2.2e-67 259.2 173 69.9
ClCG01G024510 Citrullus lanatus HOM05D000361 ORTHO05D007313 6.5e-67 257.7 173 70.5
CsaV3_6G051630 Cucumis sativus L. HOM05D000361 ORTHO05D007313 6.5e-67 257.7 173 69.9
MELO3C007144.2 Cucumis melo HOM05D000361 ORTHO05D007313 8.5e-67 257.3 173 69.9
Hund21521 Selenicereus undatus HOM05D000361 ORTHO05D007313 8.5e-67 257.3 174 70.1
VMungo1309G0878 Vigna mungo HOM05D000361 ORTHO05D007313 1.1e-66 256.9 173 71.1
Lalb_Chr07g0188661 Lupinus albus HOM05D000361 ORTHO05D007313 1.4e-66 256.5 173 70.5
arahy.Tifrunner.gnm1.ann1.7J68PP Arachis hypogaea HOM05D000361 ORTHO05D007313 4.2e-66 255.0 173 70.5
arahy.Tifrunner.gnm1.ann1.I8W9P3 Arachis hypogaea HOM05D000361 ORTHO05D007313 4.2e-66 255.0 173 70.5
Phvul.002G194200 Phaseolus vulgaris HOM05D000361 ORTHO05D007313 7.2e-66 254.2 173 69.9
EL10As10g23969 Beta vulgaris HOM05D000361 ORTHO05D007313 2.1e-65 252.7 174 67.8
AUR62027610 Chenopodium quinoa HOM05D000361 ORTHO05D007313 2.7e-65 252.3 174 67.2
Ah.09g232710 Amaranthus hybridus HOM05D000736 ORTHO05D007313 4.6e-65 251.5 174 67.2
Ca_18269_v3 Cicer arietinum L. HOM05D000361 ORTHO05D007313 1.0e-64 250.4 173 68.2
Lj4g0025504 Lotus japonicus HOM05D000361 ORTHO05D007313 1.0e-64 250.4 173 68.2
QL05p058975 Quercus lobata HOM05D000361 ORTHO05D007313 1.8e-64 249.6 173 66.5
Sed0015619 Sechium edule HOM05D000361 ORTHO05D007313 1.8e-64 249.6 173 69.4
Medtr4g096700 Medicago truncatula HOM05D000361 ORTHO05D007313 2.3e-64 249.2 173 68.2
ATR0693G231 Amborella trichopoda HOM05D000361 ORTHO05D007313 1.5e-63 246.5 173 62.4
CiPaw.10G092900 Carya illinoinensis HOM05D000361 ORTHO05D007313 4.3e-63 245.0 173 66.5
Psat7g090360 Pisum sativum HOM05D000361 ORTHO05D007313 1.3e-62 243.4 173 65.9
Haze_05571 Corylus avellana HOM05D000361 ORTHO05D007313 1.7e-62 243.0 173 66.5
Pp3c20_6190 Physcomitrium patens HOM05D000361 ORTHO05D007313 1.4e-61 240.0 173 63.6
SMO118G0248 Selaginella moellendorffii HOM05D000361 ORTHO05D007313 6.9e-61 237.7 173 61.8
Lj4g0014780 Lotus japonicus HOM05D000361 ORTHO05D007313 9.1e-61 237.3 173 64.2
Hma1.2p1_0259F.1_g104280 Hydrangea macrophylla HOM05D000361 ORTHO05D007313 2.0e-60 236.1 174 66.7
Dinv32273 Davidia involucrata HOM05D000361 ORTHO05D007313 7.7e-60 234.2 175 65.7
Eucgr.E02391 Eucalyptus grandis HOM05D000361 ORTHO05D007313 3.8e-59 231.9 173 64.2
Lj1A1185G63 Lonicera japonica HOM05D000361 ORTHO05D007313 8.5e-59 230.7 175 63.4
Atru.chr10.1290 Acer truncatum HOM05D000361 ORTHO05D007313 4.2e-58 228.4 173 63.6
Atru.chr10.1316 Acer truncatum HOM05D000361 ORTHO05D007313 4.2e-58 228.4 173 63.6
TWI73G0468 Tripterygium wilfordii HOM05D000361 ORTHO05D007313 1.6e-57 226.5 173 63.6
CSS0047698 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D007313 1.4e-56 223.4 174 62.1
THA.LOC104806124 Tarenaya hassleriana HOM05D000361 ORTHO05D007313 1.8e-56 223.0 173 60.7
CANSAT35G0708 Cannabis sativa HOM05D000361 ORTHO05D007313 3.0e-56 222.2 173 63.6
MD10G1264100 Malus domestica HOM05D000361 ORTHO05D007313 3.0e-56 222.2 172 61.0
Aa31LG9G6610 Aethionema arabicum HOM05D000361 ORTHO05D007313 3.9e-56 221.9 173 60.7
Prupe.4G078300 Prunus persica HOM05D000361 ORTHO05D007313 5.1e-56 221.5 173 59.0
Sp2g11130 Schrenkiella parvula HOM05D000361 ORTHO05D007313 5.1e-56 221.5 173 60.1
Manes.17G068400 Manihot esculenta HOM05D000361 ORTHO05D007313 1.1e-55 220.3 165 64.2
CAN.G650.47 Capsicum annuum HOM05D000361 ORTHO05D007313 1.5e-55 219.9 175 61.7
MD05G1286600 Malus domestica HOM05D000361 ORTHO05D007313 2.0e-55 219.5 173 59.5
AUR62030235 Chenopodium quinoa HOM05D000361 ORTHO05D007313 3.3e-55 218.8 152 67.1
PGR042G0058 Punica granatum HOM05D000361 ORTHO05D007313 3.3e-55 218.8 173 61.3
PGSC0003DMG400008308 Solanum tuberosum HOM05D000361 ORTHO05D007313 3.3e-55 218.8 175 61.7
AL8G12180 Arabidopsis lyrata HOM05D000361 ORTHO05D007313 4.4e-55 218.4 173 60.7
Ciclev10017750m.g Citrus clementina HOM05D000361 ORTHO05D007313 5.7e-55 218.0 173 61.3
Thhalv10000786m.g Eutrema salsugineum HOM05D000361 ORTHO05D007313 5.7e-55 218.0 173 60.1
Mapoly0001s0105 Marchantia polymorpha HOM05D000361 ORTHO05D007313 5.7e-55 218.0 173 57.8
Manes.15G120100 Manihot esculenta HOM05D000361 ORTHO05D007313 7.4e-55 217.6 165 63.6
Solyc02g070780.4 Solanum lycopersicum HOM05D000361 ORTHO05D007313 7.4e-55 217.6 175 61.1
Sopen02g019850 Solanum pennellii HOM05D000361 ORTHO05D007313 7.4e-55 217.6 175 61.1
Thecc.06G152900 Theobroma cacao HOM05D000361 ORTHO05D007313 7.4e-55 217.6 173 61.8
Nitab4.5_0001040g0140 Nicotiana tabacum HOM05D000361 ORTHO05D007313 9.7e-55 217.2 175 60.6
AT5G46280 Arabidopsis thaliana HOM05D000361 ORTHO05D007313 1.3e-54 216.9 173 60.1
CARHR175520 Cardamine hirsuta HOM05D000361 ORTHO05D007313 1.7e-54 216.5 173 60.1
A02p29810 Brassica napus HOM05D000361 ORTHO05D007313 2.2e-54 216.1 175 59.4
BraA02t08002Z Brassica rapa HOM05D000361 ORTHO05D007313 2.2e-54 216.1 175 59.4
Gorai.009G156300 Gossypium raimondii HOM05D000361 ORTHO05D007313 2.2e-54 216.1 173 61.8
Peaxi162Scf00796g00120 Petunia axillaris HOM05D000361 ORTHO05D007313 2.2e-54 216.1 175 61.1
Sabra04G0086300 Salix brachista HOM05D000361 ORTHO05D007313 2.2e-54 216.1 165 64.8
Gohir.A05G149600 Gossypium hirsutum HOM05D000361 ORTHO05D007313 2.8e-54 215.7 173 61.8
Gohir.D05G152200 Gossypium hirsutum HOM05D000361 ORTHO05D007313 2.8e-54 215.7 173 61.8
Potri.004G131600 Populus trichocarpa HOM05D000361 ORTHO05D007313 2.8e-54 215.7 165 64.2
BcaC03g16842 Brassica carinata HOM05D000361 ORTHO05D007313 3.7e-54 215.3 175 59.4
A06p46030 Brassica napus HOM05D000361 ORTHO05D007313 3.7e-54 215.3 175 59.4
C07p29500 Brassica napus HOM05D000361 ORTHO05D007313 3.7e-54 215.3 175 59.4
BolC7t43499H Brassica oleracea HOM05D000361 ORTHO05D007313 3.7e-54 215.3 175 59.4
BraA06t27467Z Brassica rapa HOM05D000361 ORTHO05D007313 3.7e-54 215.3 175 59.4
C02p47220 Brassica napus HOM05D000361 ORTHO05D007313 4.8e-54 214.9 175 59.4
BolC2t10766H Brassica oleracea HOM05D000361 ORTHO05D007313 4.8e-54 214.9 175 59.4
Gohir.D10G040300 Gossypium hirsutum HOM05D000361 ORTHO05D007313 4.8e-54 214.9 173 61.8
Gorai.011G042400 Gossypium raimondii HOM05D000361 ORTHO05D007313 4.8e-54 214.9 173 61.8
Actinidia16720 Actinidia chinensis HOM05D000361 ORTHO05D007313 6.3e-54 214.5 174 60.3
Carub.0008s0163 Capsella rubella HOM05D000361 ORTHO05D007313 6.3e-54 214.5 173 57.8
Gohir.A10G039500 Gossypium hirsutum HOM05D000361 ORTHO05D007313 6.3e-54 214.5 173 61.3
vmacro22572 Vaccinium macrocarpon HOM05D000361 ORTHO05D007313 1.1e-53 213.8 174 60.9
COL.COLO4_38291 Corchorus olitorius HOM05D000361 ORTHO05D007313 1.4e-53 213.4 173 60.7
Duzib192G0960 Durio zibethinus HOM05D000361 ORTHO05D007313 1.4e-53 213.4 173 61.3
Cc00_g11120 Coffea canephora HOM05D000361 ORTHO05D007313 2.4e-53 212.6 175 61.7
BcaC06g31485 Brassica carinata HOM05D000361 ORTHO05D007313 3.1e-53 212.2 175 58.9
Duzib160G0935 Durio zibethinus HOM05D000361 ORTHO05D007313 3.1e-53 212.2 173 60.1
FvH4_3g05860 Fragaria vesca HOM05D000361 ORTHO05D007313 1.2e-52 210.3 173 60.1
RcHm_v2.0_Chr5g0013661 Rosa chinensis HOM05D000361 ORTHO05D007313 1.5e-52 209.9 173 59.0
FAN16G3703 Fragaria x ananassa HOM05D000361 ORTHO05D007313 4.5e-52 208.4 173 59.0
FAN25G1702 Fragaria x ananassa HOM05D000361 ORTHO05D007313 4.5e-52 208.4 173 59.0
MSTRG.14768 Avicennia marina HOM05D000361 ORTHO05D007313 5.9e-52 208.0 175 58.9
FAN21G3930 Fragaria x ananassa HOM05D000361 ORTHO05D007313 1.3e-51 206.8 173 58.4
SGA_v2.0_scaffold51G18635 Striga asiatica HOM05D000361 ORTHO05D007313 2.9e-51 205.7 175 56.6
HanXRQChr04g0118381 Helianthus annuus HOM05D000361 ORTHO05D007313 3.8e-51 205.3 174 58.0
SGA_v2.0_scaffold106G30638 Striga asiatica HOM05D000361 ORTHO05D007313 5.0e-51 204.9 175 57.1
Lsat_1_v5_gn_7_30521 Lactuca sativa HOM05D000361 ORTHO05D007313 8.5e-51 204.1 174 58.6
SalBow7G1169 Salvia bowleyana HOM05D000361 ORTHO05D007313 2.5e-50 202.6 175 56.0
Migut.H01371 Erythranthe guttata HOM05D000361 ORTHO05D007313 9.4e-50 200.7 175 56.0
Rhsim13G0194100 Rhododendron simsii HOM05D000361 ORTHO05D007313 2.3e-48 196.1 190 54.2
ECA236G2001 Erigeron canadensis HOM05D000361 ORTHO05D007313 3.0e-48 195.7 166 59.0
DCAR_027944 Daucus carota HOM05D000361 ORTHO05D007313 5.2e-48 194.9 152 62.5
vmacro09958 Vaccinium macrocarpon HOM05D000361 ORTHO05D007313 2.6e-47 192.6 152 63.2
CBR_g40405 Chara braunii HOM05D000361 ORTHO05D007313 1.1e-45 187.2 162 53.1
Oeu052381.3 Olea europaea HOM05D000361 ORTHO05D007313 2.9e-43 179.1 223 44.4
Cpa.g.sc166.27 Carica papaya HOM05D000361 ORTHO05D007313 3.8e-43 178.7 131 64.1
unitig_21.g20641 Utricularia gibba HOM05D000361 ORTHO05D007313 3.8e-43 178.7 220 43.6
FAN11G2321 Fragaria x ananassa HOM05D000736 ORTHO05D007313 4.0e-40 168.7 153 55.6
MCO01G199 Micromonas commoda HOM05D000361 ORTHO05D007313 2.9e-35 152.5 162 45.1
vmacro22573 Vaccinium macrocarpon HOM05D000361 ORTHO05D007313 6.5e-35 151.4 129 58.1
PRCOL_00006492 Prasinoderma coloniale HOM05D000361 ORTHO05D007313 1.1e-34 150.6 163 45.4
Haze_26097 Corylus avellana HOM05D000361 ORTHO05D007313 1.5e-23 113.6 162 34.6
Cre06.g295700 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D007313 9.8e-23 110.9 180 36.7
RcHm_v2.0_Chr5g0013601 Rosa chinensis HOM05D000361 ORTHO05D007313 8.3e-14 81.3 54 75.9
Lj1g0011090 Lotus japonicus HOM05D000361 ORTHO05D005006 2.3e-08 63.2 196 25.0
arahy.Tifrunner.gnm1.ann1.1KN0VJ Arachis hypogaea HOM05D000361 ORTHO05D005006 1.5e-07 60.5 183 24.6
arahy.Tifrunner.gnm1.ann1.KD1TI7 Arachis hypogaea HOM05D000361 ORTHO05D005006 1.5e-07 60.5 183 24.6
Cc01_g21380 Coffea canephora HOM05D000361 ORTHO05D005006 2.0e-07 60.1 181 26.0
RcHm_v2.0_Chr7g0241501 Rosa chinensis HOM05D000361 ORTHO05D005006 3.4e-07 59.3 197 23.4
Prupe.8G272000 Prunus persica HOM05D000361 ORTHO05D005006 7.5e-07 58.2 199 23.6
vmacro15112 Vaccinium macrocarpon HOM05D000361 ORTHO05D005006 7.5e-07 58.2 182 24.7
Aa31LG8G13790 Aethionema arabicum HOM05D000361 ORTHO05D008094 9.8e-07 57.8 139 22.3
FAN04G2249 Fragaria x ananassa HOM05D000361 ORTHO05D005006 9.8e-07 57.8 197 24.4
FvH4_5g39230 Fragaria vesca HOM05D000361 ORTHO05D005006 1.3e-06 57.4 197 24.4
FAN18G2212 Fragaria x ananassa HOM05D000361 ORTHO05D005006 1.3e-06 57.4 197 24.4
Glyma.19G216100 Glycine max HOM05D000361 ORTHO05D005006 1.3e-06 57.4 197 24.4
TPR.G4047 Trifolium pratense HOM05D000361 ORTHO05D005006 1.3e-06 57.4 198 22.7
GSVIVG01028118001 Vitis vinifera HOM05D000361 ORTHO05D005006 1.3e-06 57.4 197 22.3
Glyma.03G219200 Glycine max HOM05D000361 ORTHO05D005006 1.7e-06 57.0 197 23.9
CiPaw.07G117300 Carya illinoinensis HOM05D000361 ORTHO05D005006 2.9e-06 56.2 198 22.2
Aa31LG5G1690 Aethionema arabicum HOM05D000361 ORTHO05D005006 3.7e-06 55.8 199 25.1
Actinidia25846 Actinidia chinensis HOM05D000361 ORTHO05D005006 4.9e-06 55.5 188 26.6
Gohir.A11G109800 Gossypium hirsutum HOM05D000361 ORTHO05D005006 4.9e-06 55.5 197 23.4
EL10Ac9g21675 Beta vulgaris HOM05D000361 ORTHO05D008094 6.4e-06 55.1 146 25.3
THA.LOC104801305 Tarenaya hassleriana HOM05D000361 ORTHO05D005006 6.4e-06 55.1 192 26.0
AUR62011814 Chenopodium quinoa HOM05D000361 ORTHO05D005006 8.3e-06 54.7 173 22.5
Gorai.007G123000 Gossypium raimondii HOM05D000361 ORTHO05D005006 8.3e-06 54.7 197 23.4


User provided reference genes

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