Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 1.4e-162 576.2 290 100.0
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 5.4e-143 511.1 290 87.6
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.0e-141 505.4 290 86.6
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 9.6e-140 500.4 290 86.6
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 1.2e-139 500.0 290 86.2
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 3.1e-138 495.4 290 84.5
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 5.2e-138 494.6 290 84.8
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 4.4e-137 491.5 289 83.7
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 5.8e-137 491.1 290 83.8
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 7.6e-137 490.7 290 82.8
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 3.8e-136 488.4 286 83.9
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 8.4e-136 487.3 286 82.5
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 8.4e-136 487.3 289 82.4
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.1e-135 486.9 290 81.7
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 1.9e-135 486.1 287 82.6
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 4.2e-135 485.0 290 82.1
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 4.2e-135 485.0 290 82.1
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 5.4e-135 484.6 302 81.8
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 5.4e-135 484.6 284 83.5
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 7.1e-135 484.2 288 82.3
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.6e-134 483.0 289 82.0
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 2.1e-134 482.6 289 82.4
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.1e-134 482.6 289 82.0
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 2.7e-134 482.3 290 82.8
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 3.5e-134 481.9 290 81.4
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 6.0e-134 481.1 289 81.3
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 7.8e-134 480.7 290 80.3
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 1.7e-133 479.6 287 81.5
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 2.3e-133 479.2 290 80.3
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 2.3e-133 479.2 284 83.1
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 3.0e-133 478.8 287 81.2
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 3.9e-133 478.4 290 82.1
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 5.1e-133 478.0 287 82.6
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 5.1e-133 478.0 289 80.6
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 6.6e-133 477.6 288 80.2
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.9e-132 476.1 286 82.2
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.9e-132 476.1 290 80.0
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.9e-132 476.1 287 81.9
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 2.5e-132 475.7 287 79.1
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 3.3e-132 475.3 289 81.0
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 3.3e-132 475.3 290 80.0
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 4.3e-132 474.9 289 80.3
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 7.3e-132 474.2 286 80.4
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 9.6e-132 473.8 286 80.1
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 9.6e-132 473.8 288 80.9
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 9.6e-132 473.8 291 80.4
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 2.1e-131 472.6 289 79.9
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 2.1e-131 472.6 287 81.2
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 2.8e-131 472.2 290 80.3
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 4.8e-131 471.5 291 80.1
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 1.1e-130 470.3 289 78.5
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.1e-130 470.3 289 79.6
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 1.4e-130 469.9 289 79.6
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.4e-130 469.9 287 80.8
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 1.8e-130 469.5 287 78.0
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.8e-130 469.5 289 78.9
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 2.4e-130 469.2 289 78.5
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 2.4e-130 469.2 290 79.3
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 3.1e-130 468.8 287 78.4
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 3.1e-130 468.8 289 79.9
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 5.3e-130 468.0 289 78.5
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 5.3e-130 468.0 287 78.0
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 9.0e-130 467.2 289 78.2
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.5e-129 466.5 289 78.9
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 2.0e-129 466.1 289 77.9
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 2.6e-129 465.7 289 77.9
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 2.6e-129 465.7 289 78.5
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 3.4e-129 465.3 289 78.2
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 5.8e-129 464.5 289 77.2
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 5.8e-129 464.5 289 77.9
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 5.8e-129 464.5 289 77.2
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 5.8e-129 464.5 286 78.0
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 7.6e-129 464.2 289 77.9
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 7.6e-129 464.2 290 77.9
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 7.6e-129 464.2 289 77.5
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 1.3e-128 463.4 289 77.5
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 2.2e-128 462.6 290 79.0
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 2.9e-128 462.2 290 77.9
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 2.9e-128 462.2 289 76.5
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 3.8e-128 461.8 287 79.4
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 1.4e-127 459.9 286 77.3
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 1.9e-127 459.5 289 77.2
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 3.2e-127 458.8 289 77.2
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 3.2e-127 458.8 288 79.2
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 3.2e-127 458.8 307 77.2
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 3.2e-127 458.8 306 77.1
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 4.2e-127 458.4 289 76.8
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 4.2e-127 458.4 322 73.3
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 5.4e-127 458.0 283 77.7
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 5.4e-127 458.0 290 78.3
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 7.1e-127 457.6 290 79.3
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 1.2e-126 456.8 289 75.8
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 2.1e-126 456.1 305 76.7
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 3.5e-126 455.3 290 76.9
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 3.5e-126 455.3 289 76.8
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 4.6e-126 454.9 291 77.3
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 7.9e-126 454.1 286 75.9
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 7.9e-126 454.1 286 75.9
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 7.9e-126 454.1 286 75.9
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 7.9e-126 454.1 290 77.6
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 1.7e-125 453.0 286 75.5
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 1.7e-125 453.0 286 75.5
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.9e-125 451.8 288 76.4
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 2.5e-124 449.1 289 76.1
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 5.6e-124 448.0 289 75.1
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.6e-123 446.4 288 75.7
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 2.8e-123 445.7 272 80.5
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 8.1e-123 444.1 290 75.5
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 6.9e-122 441.0 287 73.9
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 1.2e-121 440.3 287 74.2
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 4.5e-121 438.3 287 73.5
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 4.5e-121 438.3 290 74.5
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 9.9e-121 437.2 303 72.9
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 9.9e-121 437.2 293 74.7
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 1.7e-120 436.4 291 73.9
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.7e-120 436.4 293 74.4
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 3.8e-120 435.3 287 73.2
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 4.2e-119 431.8 292 76.7
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.7e-118 429.1 261 83.5
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 4.6e-118 428.3 287 72.8
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 1.0e-117 427.2 292 72.6
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.3e-117 426.8 448 54.7
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 9.6e-116 420.6 290 73.4
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 4.8e-115 418.3 289 71.6
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 8.1e-115 417.5 287 71.1
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.1e-114 417.2 290 70.3
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 2.4e-114 416.0 289 70.6
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 6.9e-114 414.5 307 70.0
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 9.0e-114 414.1 299 72.2
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 4.5e-113 411.8 232 87.5
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 4.5e-113 411.8 290 69.7
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.2e-112 409.5 291 69.8
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.9e-112 409.1 291 69.4
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 3.8e-112 408.7 283 69.6
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 4.9e-112 408.3 291 69.4
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 6.5e-112 407.9 290 69.0
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 4.3e-108 395.2 290 67.2
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 1.6e-107 393.3 293 67.2
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 1.4e-106 390.2 256 74.6
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 5.9e-105 384.8 294 66.0
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 1.7e-104 383.3 230 80.4
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 1.7e-104 383.3 257 73.9
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 1.1e-100 370.5 289 64.7
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 4.1e-98 362.1 232 75.4
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 5.9e-97 358.2 298 64.4
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 1.4e-87 327.0 285 60.4
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 3.0e-85 319.3 204 77.9
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 7.4e-84 314.7 164 95.7
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 3.2e-79 299.3 281 54.8
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 4.7e-78 295.4 287 53.0
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.7e-75 287.0 270 58.1
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 2.0e-73 280.0 284 50.7
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 5.2e-69 265.4 281 48.0
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 7.8e-57 224.9 152 69.7
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 8.0e-54 214.9 151 72.2
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 2.2e-51 206.8 113 86.7
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 7.3e-47 191.8 139 70.5
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 4.6e-25 119.4 94 67.0
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 1.3e-24 117.9 82 73.2
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 3.0e-24 116.7 124 50.0
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.5e-23 114.4 94 64.9
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 7.3e-23 112.1 152 42.8
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.6e-22 110.9 94 63.8
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 2.4e-21 107.1 76 68.4
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 7.6e-20 102.1 66 75.8
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 1.1e-18 98.2 63 76.2
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 3.2e-18 96.7 79 64.6
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 3.5e-17 93.2 70 64.3
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 7.8e-17 92.0 57 75.4
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 8.1e-14 82.0 58 67.2
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 8.1e-14 82.0 58 67.2
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 6.4e-11 72.4 55 67.3
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 3.3e-07 60.1 59 57.6
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 8.1e-06 55.5 32 78.1


User provided reference genes

Program Settings