Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0966 Ceratophyllum demersum HOM05D004250 ORTHO05D005264 4.3e-56 221.1 112 100.0
EL10Ac8g20543 Beta vulgaris HOM05D004250 ORTHO05D005264 1.5e-29 132.9 96 68.8
TAR626G0831 Trochodendron aralioides HOM05D004250 ORTHO05D005264 3.4e-29 131.7 96 72.9
SGA_v2.0_scaffold7G03561 Striga asiatica HOM05D004250 ORTHO05D005264 7.7e-29 130.6 96 72.9
AUR62014705 Chenopodium quinoa HOM05D004250 ORTHO05D005264 3.8e-28 128.3 96 66.7
Solyc10g005660.3 Solanum lycopersicum HOM05D004250 ORTHO05D005264 5.0e-28 127.9 96 67.7
TPR.G16718 Trifolium pratense HOM05D004250 ORTHO05D005264 5.0e-28 127.9 100 69.0
SGA_v2.0_scaffold186G40229 Striga asiatica HOM05D004250 ORTHO05D005264 8.5e-28 127.1 96 70.8
Aqoxy3G04043 Aquilegia oxysepala HOM05D004250 ORTHO05D005264 1.4e-27 126.3 98 69.4
Ca_14123_v3 Cicer arietinum L. HOM05D004250 ORTHO05D005264 1.4e-27 126.3 98 68.4
Ciclev10008979m.g Citrus clementina HOM05D004250 ORTHO05D005264 1.4e-27 126.3 96 68.8
Psat5g231040 Pisum sativum HOM05D004250 ORTHO05D005264 1.4e-27 126.3 100 69.0
MSTRG.14533 Avicennia marina HOM05D004250 ORTHO05D005264 1.9e-27 125.9 96 69.8
Medtr3g009270 Medicago truncatula HOM05D004250 ORTHO05D005264 2.5e-27 125.6 98 67.3
Cc05_g15830 Coffea canephora HOM05D004250 ORTHO05D005264 3.2e-27 125.2 101 66.3
Migut.M01574 Erythranthe guttata HOM05D004250 ORTHO05D005264 3.2e-27 125.2 103 67.0
Lalb_Chr18g0048731 Lupinus albus HOM05D004250 ORTHO05D005264 3.2e-27 125.2 98 68.4
CANSAT11G0977 Cannabis sativa HOM05D004250 ORTHO05D005264 4.2e-27 124.8 112 61.6
PGSC0003DMG400011272 Solanum tuberosum HOM05D004250 ORTHO05D005264 5.5e-27 124.4 96 67.7
CiPaw.11G211400 Carya illinoinensis HOM05D004250 ORTHO05D005264 7.2e-27 124.0 101 65.3
ECA240G3010 Erigeron canadensis HOM05D004250 ORTHO05D005264 7.2e-27 124.0 98 65.3
Lsat_1_v5_gn_9_88440 Lactuca sativa HOM05D004250 ORTHO05D005264 7.2e-27 124.0 96 64.6
TWI38G1388 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 7.2e-27 124.0 96 65.6
VMungo1080G0729 Vigna mungo HOM05D004250 ORTHO05D005264 7.2e-27 124.0 100 66.0
arahy.Tifrunner.gnm1.ann1.22L1JW Arachis hypogaea HOM05D004250 ORTHO05D005264 9.4e-27 123.6 96 68.8
arahy.Tifrunner.gnm1.ann1.LZ5KER Arachis hypogaea HOM05D004250 ORTHO05D005264 9.4e-27 123.6 96 68.8
PSO063G3722 Papaver somniferum HOM05D004250 ORTHO05D005264 9.4e-27 123.6 97 67.0
PSO782G2166 Papaver somniferum HOM05D004250 ORTHO05D005264 9.4e-27 123.6 97 67.0
Lj3g0022167 Lotus japonicus HOM05D004250 ORTHO05D005264 1.6e-26 122.9 100 67.0
Oeu052877.1 Olea europaea HOM05D004250 ORTHO05D005264 1.6e-26 122.9 101 67.3
Phvul.005G006100 Phaseolus vulgaris HOM05D004250 ORTHO05D005264 1.6e-26 122.9 100 66.0
AUR62012490 Chenopodium quinoa HOM05D004250 ORTHO05D005264 2.1e-26 122.5 96 64.6
Rhsim04G0006600 Rhododendron simsii HOM05D004250 ORTHO05D005264 2.1e-26 122.5 98 65.3
Gohir.A13G127700 Gossypium hirsutum HOM05D004250 ORTHO05D005264 2.7e-26 122.1 101 65.3
Gohir.D13G131400 Gossypium hirsutum HOM05D004250 ORTHO05D005264 2.7e-26 122.1 101 65.3
Gorai.013G147400 Gossypium raimondii HOM05D004250 ORTHO05D005264 2.7e-26 122.1 101 65.3
Nn2g14378 Nelumbo nucifera HOM05D004250 ORTHO05D005264 2.7e-26 122.1 96 68.8
CAN.G943.20 Capsicum annuum HOM05D004250 ORTHO05D005264 3.6e-26 121.7 96 66.7
Manes.01G008200 Manihot esculenta HOM05D004250 ORTHO05D005264 3.6e-26 121.7 106 61.3
Nn1g07611 Nelumbo nucifera HOM05D004250 ORTHO05D005264 3.6e-26 121.7 96 66.7
Manes.01G008500 Manihot esculenta HOM05D004250 ORTHO05D005264 4.7e-26 121.3 106 61.3
Potri.011G169900 Populus trichocarpa HOM05D004250 ORTHO05D005264 4.7e-26 121.3 96 66.7
Atru.chr2.3911 Acer truncatum HOM05D004250 ORTHO05D005264 6.1e-26 120.9 96 64.6
Glyma.04G115900 Glycine max HOM05D004250 ORTHO05D005264 6.1e-26 120.9 98 63.3
Lalb_Chr04g0259411 Lupinus albus HOM05D004250 ORTHO05D005264 6.1e-26 120.9 101 63.4
CsaV3_7G021250 Cucumis sativus L. HOM05D004250 ORTHO05D005264 8.0e-26 120.6 107 59.8
HanXRQChr13g0409281 Helianthus annuus HOM05D004250 ORTHO05D005264 8.0e-26 120.6 96 68.8
MD03G1045500 Malus domestica HOM05D004250 ORTHO05D005264 8.0e-26 120.6 108 61.1
TWI14G0209 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 8.0e-26 120.6 96 63.5
TWI39G0164 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 8.0e-26 120.6 96 63.5
A03p56690 Brassica napus HOM05D004250 ORTHO05D005264 1.0e-25 120.2 104 62.5
BraA03t14739Z Brassica rapa HOM05D004250 ORTHO05D005264 1.0e-25 120.2 104 62.5
BcaC04g20112 Brassica carinata HOM05D004250 ORTHO05D005264 1.4e-25 119.8 106 62.3
C09p47550 Brassica napus HOM05D004250 ORTHO05D005264 1.4e-25 119.8 106 62.3
BolC9t57609H Brassica oleracea HOM05D004250 ORTHO05D005264 1.4e-25 119.8 106 62.3
Carub.0008s1660 Capsella rubella HOM05D004250 ORTHO05D005264 1.4e-25 119.8 105 62.9
Thhalv10014144m.g Eutrema salsugineum HOM05D004250 ORTHO05D005264 1.4e-25 119.8 100 64.0
ATR0751G160 Amborella trichopoda HOM05D004250 ORTHO05D005264 1.8e-25 119.4 94 66.0
AL7G26520 Arabidopsis lyrata HOM05D004250 ORTHO05D005264 1.8e-25 119.4 100 62.0
THA.LOC104811707 Tarenaya hassleriana HOM05D004250 ORTHO05D005264 1.8e-25 119.4 105 65.7
vmacro09793 Vaccinium macrocarpon HOM05D004250 ORTHO05D005264 1.8e-25 119.4 99 62.6
Sed0017579 Sechium edule HOM05D004250 ORTHO05D005264 2.3e-25 119.0 101 61.4
AL8G31910 Arabidopsis lyrata HOM05D004250 ORTHO05D005264 3.0e-25 118.6 105 61.9
AT5G56280 Arabidopsis thaliana HOM05D004250 ORTHO05D005264 3.0e-25 118.6 105 61.9
MELO3C013230.2 Cucumis melo HOM05D004250 ORTHO05D005264 3.0e-25 118.6 107 58.9
PGR031G3775 Punica granatum HOM05D004250 ORTHO05D005264 3.0e-25 118.6 102 61.8
Sabra11G0137100 Salix brachista HOM05D004250 ORTHO05D005264 3.0e-25 118.6 96 65.6
THA.LOC104817729 Tarenaya hassleriana HOM05D004250 ORTHO05D005264 3.9e-25 118.2 105 61.9
unitig_46.g18525 Utricularia gibba HOM05D004250 ORTHO05D005264 3.9e-25 118.2 104 65.4
C07p54890 Brassica napus HOM05D004250 ORTHO05D005264 5.2e-25 117.9 102 62.7
BolC7t45977H Brassica oleracea HOM05D004250 ORTHO05D005264 5.2e-25 117.9 102 62.7
ClCG09G021790 Citrullus lanatus HOM05D004250 ORTHO05D005264 5.2e-25 117.9 107 58.9
Thecc.07G000400 Theobroma cacao HOM05D004250 ORTHO05D005264 5.2e-25 117.9 101 61.4
Duzib268G1454 Durio zibethinus HOM05D004250 ORTHO05D005264 6.7e-25 117.5 101 60.4
Glyma.06G320400 Glycine max HOM05D004250 ORTHO05D005264 6.7e-25 117.5 102 60.8
Sopen10g001630 Solanum pennellii HOM05D004250 ORTHO05D005264 6.7e-25 117.5 96 63.5
Aa31LG3G12190 Aethionema arabicum HOM05D004250 ORTHO05D005264 8.8e-25 117.1 100 62.0
DCAR_016810 Daucus carota HOM05D004250 ORTHO05D005264 8.8e-25 117.1 96 63.5
MD11G1047700 Malus domestica HOM05D004250 ORTHO05D005264 1.1e-24 116.7 111 58.6
Nitab4.5_0000611g0160 Nicotiana tabacum HOM05D004250 ORTHO05D005264 1.1e-24 116.7 96 66.7
BcaNung02419 Brassica carinata HOM05D004250 ORTHO05D005264 1.5e-24 116.3 104 59.6
A10p13550 Brassica napus HOM05D004250 ORTHO05D005264 1.5e-24 116.3 102 61.8
BraA10t43459Z Brassica rapa HOM05D004250 ORTHO05D005264 1.5e-24 116.3 102 61.8
HanXRQChr03g0076651 Helianthus annuus HOM05D004250 ORTHO05D005264 1.5e-24 116.3 96 63.5
GSVIVG01014869001 Vitis vinifera HOM05D004250 ORTHO05D005264 1.5e-24 116.3 97 63.9
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 2.0e-24 115.9 99 62.6
Os08g0500000 Oryza sativa ssp. japonica HOM05D004250 ORTHO05D005264 2.0e-24 115.9 96 61.5
Prupe.6G036800 Prunus persica HOM05D004250 ORTHO05D005264 2.0e-24 115.9 112 57.1
Hund12926 Selenicereus undatus HOM05D004250 ORTHO05D005264 2.0e-24 115.9 98 63.3
CARHR269680 Cardamine hirsuta HOM05D004250 ORTHO05D005264 2.6e-24 115.5 101 60.4
QL08p000150 Quercus lobata HOM05D004250 ORTHO05D005264 2.6e-24 115.5 98 62.2
Carub.0007s1450 Capsella rubella HOM05D004250 ORTHO05D005264 3.3e-24 115.2 100 61.0
Thhalv10025688m.g Eutrema salsugineum HOM05D004250 ORTHO05D005264 3.3e-24 115.2 100 62.0
Oeu052019.1 Olea europaea HOM05D004250 ORTHO05D005264 3.3e-24 115.2 99 62.6
Sp7g24340 Schrenkiella parvula HOM05D004250 ORTHO05D005264 3.3e-24 115.2 105 61.0
BcaC06g32749 Brassica carinata HOM05D004250 ORTHO05D005264 4.4e-24 114.8 105 59.0
BcaNung02422 Brassica carinata HOM05D004250 ORTHO05D005264 4.4e-24 114.8 105 59.0
Ah.09g236430 Amaranthus hybridus HOM05D004250 ORTHO05D005264 7.4e-24 114.0 94 63.8
CARHR233990 Cardamine hirsuta HOM05D004250 ORTHO05D005264 7.4e-24 114.0 100 59.0
DCAR_013752 Daucus carota HOM05D004250 ORTHO05D005264 7.4e-24 114.0 97 63.9
Gohir.A08G026400 Gossypium hirsutum HOM05D004250 ORTHO05D005264 9.7e-24 113.6 111 57.7
Gohir.D08G036800 Gossypium hirsutum HOM05D004250 ORTHO05D005264 9.7e-24 113.6 111 57.7
Gorai.004G034800 Gossypium raimondii HOM05D004250 ORTHO05D005264 9.7e-24 113.6 111 57.7
Nitab4.5_0004488g0050 Nicotiana tabacum HOM05D004250 ORTHO05D005264 9.7e-24 113.6 96 64.6
RcHm_v2.0_Chr5g0074251 Rosa chinensis HOM05D004250 ORTHO05D005264 9.7e-24 113.6 113 55.8
BcaC09g50705 Brassica carinata HOM05D004250 ORTHO05D005264 1.3e-23 113.2 104 60.6
BolC1t02162H Brassica oleracea HOM05D004250 ORTHO05D005264 1.3e-23 113.2 104 60.6
Haze_09928 Corylus avellana HOM05D004250 ORTHO05D005264 1.3e-23 113.2 101 61.4
Cpa.g.sc12.53 Carica papaya HOM05D004250 ORTHO05D005264 1.7e-23 112.8 94 67.0
SalBow8G0719 Salvia bowleyana HOM05D004250 ORTHO05D005264 1.7e-23 112.8 97 63.9
SHI16643 Sapria himalayana HOM05D004250 ORTHO05D005264 1.7e-23 112.8 98 61.2
Sp6g18130 Schrenkiella parvula HOM05D004250 ORTHO05D005264 1.7e-23 112.8 105 59.0
AT4G26430 Arabidopsis thaliana HOM05D004250 ORTHO05D005264 2.8e-23 112.1 100 60.0
Aa31LG5G11770 Aethionema arabicum HOM05D004250 ORTHO05D005264 3.7e-23 111.7 100 59.0
A01p17650 Brassica napus HOM05D004250 ORTHO05D005264 3.7e-23 111.7 104 59.6
C01p22290 Brassica napus HOM05D004250 ORTHO05D005264 3.7e-23 111.7 104 60.6
BraA01t01720Z Brassica rapa HOM05D004250 ORTHO05D005264 3.7e-23 111.7 104 59.6
Sc03g0011830 Simmondsia chinensis HOM05D004250 ORTHO05D005264 4.8e-23 111.3 107 57.0
Duzib170G0346 Durio zibethinus HOM05D004250 ORTHO05D005264 6.3e-23 110.9 101 59.4
FAN16G1338 Fragaria x ananassa HOM05D004250 ORTHO05D005264 6.3e-23 110.9 109 56.0
Lj1A902T42 Lonicera japonica HOM05D004250 ORTHO05D005264 6.3e-23 110.9 97 61.9
FvH4_3g41360 Fragaria vesca HOM05D004250 ORTHO05D005264 8.2e-23 110.5 108 55.6
FAN11G0503 Fragaria x ananassa HOM05D004250 ORTHO05D005264 8.2e-23 110.5 108 55.6
FAN25G1562 Fragaria x ananassa HOM05D004250 ORTHO05D005264 8.2e-23 110.5 108 57.4
Zm00001eb034040 Zea mays HOM05D004250 ORTHO05D005264 8.2e-23 110.5 91 61.5
CSS0003988 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 1.1e-22 110.2 96 61.5
CSS0046656 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 1.1e-22 110.2 96 61.5
CSS0027583 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 1.4e-22 109.8 99 60.6
FAN21G3674 Fragaria x ananassa HOM05D004250 ORTHO05D005264 1.8e-22 109.4 111 55.9
Oeu061794.1 Olea europaea HOM05D004250 ORTHO05D005264 1.8e-22 109.4 102 60.8
Sed0022093 Sechium edule HOM05D004250 ORTHO05D005264 1.8e-22 109.4 105 54.3
Zm00001eb199540 Zea mays HOM05D004250 ORTHO05D005264 9.1e-22 107.1 91 59.3
SMO367G0766 Selaginella moellendorffii HOM05D004250 ORTHO05D005264 1.6e-21 106.3 97 59.8
SEGI_37935 Sequoiadendron giganteum HOM05D004250 ORTHO05D005264 1.6e-21 106.3 94 58.5
Mapoly0151s0043 Marchantia polymorpha HOM05D004250 ORTHO05D005264 7.7e-21 104.0 94 58.5
AagrBONN_evm.TU.Sc2ySwM_362.2287 Anthoceros agrestis HOM05D004250 ORTHO05D005264 1.3e-20 103.2 94 56.4
Pp3c14_22830 Physcomitrium patens HOM05D004250 ORTHO05D005264 1.9e-19 99.4 94 55.3
Peaxi162Scf00232g00910 Petunia axillaris HOM05D004250 ORTHO05D005264 2.1e-18 95.9 79 64.6
Hma1.2p1_0193F.1_g084430 Hydrangea macrophylla HOM05D004250 ORTHO05D005264 1.4e-17 93.2 98 56.1
CBR_g38485 Chara braunii HOM05D004250 ORTHO05D005264 9.7e-16 87.0 96 50.0
Pp3c17_21990 Physcomitrium patens HOM05D004250 ORTHO05D005264 3.1e-14 82.0 90 48.9
PGSC0003DMG400022138 Solanum tuberosum HOM05D004250 ORTHO05D005264 2.9e-12 75.5 96 45.8
Cre11.g467647 Chlamydomonas reinhardtii HOM05D004250 ORTHO05D005264 4.2e-11 71.6 96 42.7
Nitab4.5_0000294g0190 Nicotiana tabacum HOM05D004250 ORTHO05D005264 2.7e-10 68.9 91 45.1
Actinidia37105 Actinidia chinensis HOM05D004250 ORTHO05D005264 6.1e-10 67.8 61 62.3
Nitab4.5_0001235g0020 Nicotiana tabacum HOM05D004250 ORTHO05D005264 1.0e-09 67.0 91 44.0
MCO07G296 Micromonas commoda HOM05D004250 ORTHO05D005264 6.3e-07 57.8 71 43.7
Os12g0621900 Oryza sativa ssp. japonica HOM05D004250 ORTHO05D005264 1.1e-06 57.0 102 34.3
Os12g0622900 Oryza sativa ssp. japonica HOM05D004250 ORTHO05D005264 1.8e-06 56.2 98 35.7
Actinidia35441 Actinidia chinensis HOM05D004250 ORTHO05D005264 5.4e-06 54.7 29 86.2
Dinv19634 Davidia involucrata HOM05D004250 ORTHO05D005264 5.4e-06 54.7 29 86.2


User provided reference genes

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