Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0963 Ceratophyllum demersum HOM05D003416 ORTHO05D003886 8.1e-85 317.0 156 100.0
CDE02G3166 Ceratophyllum demersum HOM05D003416 ORTHO05D003886 3.7e-53 211.8 253 52.2
CDE11G0918 Ceratophyllum demersum HOM05D003416 ORTHO05D003886 5.5e-33 144.8 220 45.0
Dinv39811 Davidia involucrata HOM05D003416 ORTHO05D003886 5.7e-30 134.8 123 60.2
TAR629G1153 Trochodendron aralioides HOM05D003416 ORTHO05D003886 1.4e-23 113.6 210 39.0
CANSAT56G2779 Cannabis sativa HOM05D003416 ORTHO05D003886 3.9e-23 112.1 210 38.6
Gohir.A09G071000 Gossypium hirsutum HOM05D003416 ORTHO05D003886 6.7e-23 111.3 210 38.1
Gohir.D09G070800 Gossypium hirsutum HOM05D003416 ORTHO05D003886 6.7e-23 111.3 210 38.1
Gorai.006G085600 Gossypium raimondii HOM05D003416 ORTHO05D003886 6.7e-23 111.3 210 38.1
MBI02_g35908_MAGBIO Magnolia biondii HOM05D003416 ORTHO05D003886 6.7e-23 111.3 210 39.0
TAR627G0574 Trochodendron aralioides HOM05D003416 ORTHO05D003886 6.7e-23 111.3 210 38.1
Duzib160G0023 Durio zibethinus HOM05D003416 ORTHO05D003886 8.8e-23 110.9 210 38.1
Lj4g0020511 Lotus japonicus HOM05D003416 ORTHO05D003886 1.5e-22 110.2 213 37.1
Actinidia24064 Actinidia chinensis HOM05D003416 ORTHO05D003886 2.6e-22 109.4 210 38.6
Cpa.g.sc27.113 Carica papaya HOM05D003416 ORTHO05D003886 2.6e-22 109.4 210 37.6
Cfa000362 Carpinus fangiana HOM05D003416 ORTHO05D003886 2.6e-22 109.4 210 37.1
Duzib192G0173 Durio zibethinus HOM05D003416 ORTHO05D003886 2.6e-22 109.4 210 37.6
Solyc02g080270.3 Solanum lycopersicum HOM05D003416 ORTHO05D003886 2.6e-22 109.4 264 34.8
Thecc.06G197700 Theobroma cacao HOM05D003416 ORTHO05D003886 2.6e-22 109.4 210 37.6
Eucgr.D00708 Eucalyptus grandis HOM05D003416 ORTHO05D003886 3.3e-22 109.0 210 36.7
Actinidia05584 Actinidia chinensis HOM05D003416 ORTHO05D003886 4.4e-22 108.6 211 37.4
AL7G32460 Arabidopsis lyrata HOM05D003416 ORTHO05D003886 4.4e-22 108.6 208 38.0
AT4G21560 Arabidopsis thaliana HOM05D003416 ORTHO05D003886 4.4e-22 108.6 208 38.0
COL.COLO4_31570 Corchorus olitorius HOM05D003416 ORTHO05D003886 4.4e-22 108.6 210 37.1
PSO210G7563 Papaver somniferum HOM05D003416 ORTHO05D003886 4.4e-22 108.6 210 38.1
PSO832G0607 Papaver somniferum HOM05D003416 ORTHO05D003886 4.4e-22 108.6 210 38.1
GSVIVG01006715001 Vitis vinifera HOM05D003416 ORTHO05D003886 4.4e-22 108.6 210 38.6
Sp7g19690 Schrenkiella parvula HOM05D003416 ORTHO05D003886 5.7e-22 108.2 208 39.4
Atru.chr10.1996 Acer truncatum HOM05D003416 ORTHO05D003886 7.4e-22 107.8 208 37.0
Ciclev10016702m.g Citrus clementina HOM05D003416 ORTHO05D003886 7.4e-22 107.8 210 37.1
FvH4_3g04140 Fragaria vesca HOM05D003416 ORTHO05D003886 7.4e-22 107.8 209 37.8
PSO541G0607 Papaver somniferum HOM05D003416 ORTHO05D003886 7.4e-22 107.8 210 36.7
PSO675G2462 Papaver somniferum HOM05D003416 ORTHO05D003886 7.4e-22 107.8 210 36.7
Psat7g110520 Pisum sativum HOM05D003416 ORTHO05D003886 7.4e-22 107.8 210 36.7
RcHm_v2.0_Chr5g0006591 Rosa chinensis HOM05D003416 ORTHO05D003886 7.4e-22 107.8 208 37.0
Sabra11G0030400 Salix brachista HOM05D003416 ORTHO05D003886 7.4e-22 107.8 210 37.1
CSS0014754 Camellia sinensis var. sinensis HOM05D003416 ORTHO05D003886 9.7e-22 107.5 210 37.1
Duzib235G0788 Durio zibethinus HOM05D003416 ORTHO05D003886 9.7e-22 107.5 210 37.6
Thhalv10026248m.g Eutrema salsugineum HOM05D003416 ORTHO05D003886 9.7e-22 107.5 208 37.5
Lsat_1_v5_gn_2_102821 Lactuca sativa HOM05D003416 ORTHO05D003886 9.7e-22 107.5 210 37.1
Potri.004G035500 Populus trichocarpa HOM05D003416 ORTHO05D003886 9.7e-22 107.5 210 37.1
THA.LOC104812756 Tarenaya hassleriana HOM05D003416 ORTHO05D003886 9.7e-22 107.5 210 36.7
Gohir.A10G020300 Gossypium hirsutum HOM05D003416 ORTHO05D003886 1.3e-21 107.1 210 37.1
HanXRQChr06g0163981 Helianthus annuus HOM05D003416 ORTHO05D003886 1.3e-21 107.1 210 36.7
Sc05g0008040 Simmondsia chinensis HOM05D003416 ORTHO05D003886 1.3e-21 107.1 210 40.0
Sc05g0010020 Simmondsia chinensis HOM05D003416 ORTHO05D003886 1.3e-21 107.1 210 40.0
TPR.G32409 Trifolium pratense HOM05D003416 ORTHO05D003886 1.3e-21 107.1 210 36.2
Carub.0007s1985 Capsella rubella HOM05D003416 ORTHO05D003886 1.7e-21 106.7 208 38.9
FAN16G3314 Fragaria x ananassa HOM05D003416 ORTHO05D003886 1.7e-21 106.7 208 36.5
FAN25G2192 Fragaria x ananassa HOM05D003416 ORTHO05D003886 1.7e-21 106.7 208 36.5
Hma1.2p1_1363F.1_g278350 Hydrangea macrophylla HOM05D003416 ORTHO05D003886 1.7e-21 106.7 210 36.7
Lsat_1_v5_gn_5_141241 Lactuca sativa HOM05D003416 ORTHO05D003886 1.7e-21 106.7 210 36.7
DCAR_004200 Daucus carota HOM05D003416 ORTHO05D003886 2.2e-21 106.3 210 35.7
FAN21G1434 Fragaria x ananassa HOM05D003416 ORTHO05D003886 2.2e-21 106.3 208 36.5
SGA_v2.0_scaffold49G18264 Striga asiatica HOM05D003416 ORTHO05D003886 2.2e-21 106.3 208 36.1
TWI63G0283 Tripterygium wilfordii HOM05D003416 ORTHO05D003886 2.2e-21 106.3 210 36.7
BcaB03g11690 Brassica carinata HOM05D003416 ORTHO05D003886 2.8e-21 105.9 208 37.5
Eucgr.E03460 Eucalyptus grandis HOM05D003416 ORTHO05D003886 2.8e-21 105.9 210 36.7
Medtr4g090890 Medicago truncatula HOM05D003416 ORTHO05D003886 2.8e-21 105.9 209 36.4
PGSC0003DMG400002086 Solanum tuberosum HOM05D003416 ORTHO05D003886 2.8e-21 105.9 210 36.2
A01p12860 Brassica napus HOM05D003416 ORTHO05D003886 3.7e-21 105.5 208 37.0
BraA01t01230Z Brassica rapa HOM05D003416 ORTHO05D003886 3.7e-21 105.5 208 37.0
CiPaw.09G158800 Carya illinoinensis HOM05D003416 ORTHO05D003886 3.7e-21 105.5 210 36.7
AUR62014727 Chenopodium quinoa HOM05D003416 ORTHO05D003886 3.7e-21 105.5 210 35.7
AUR62016909 Chenopodium quinoa HOM05D003416 ORTHO05D003886 3.7e-21 105.5 210 35.7
FAN11G2070 Fragaria x ananassa HOM05D003416 ORTHO05D003886 3.7e-21 105.5 208 37.5
Nn1g03918 Nelumbo nucifera HOM05D003416 ORTHO05D003886 3.7e-21 105.5 210 37.6
Phvul.002G223000 Phaseolus vulgaris HOM05D003416 ORTHO05D003886 3.7e-21 105.5 210 36.2
SHI02080 Sapria himalayana HOM05D003416 ORTHO05D003886 3.7e-21 105.5 217 35.0
BcaNung02784 Brassica carinata HOM05D003416 ORTHO05D003886 4.8e-21 105.1 208 38.5
BcaNung02787 Brassica carinata HOM05D003416 ORTHO05D003886 4.8e-21 105.1 208 38.5
C01p15480 Brassica napus HOM05D003416 ORTHO05D003886 4.8e-21 105.1 208 38.5
CAN.G569.26 Capsicum annuum HOM05D003416 ORTHO05D003886 4.8e-21 105.1 210 35.7
Ca_18491_v3 Cicer arietinum L. HOM05D003416 ORTHO05D003886 4.8e-21 105.1 210 35.7
Ca_29544_v3 Cicer arietinum L. HOM05D003416 ORTHO05D003886 4.8e-21 105.1 210 35.7
AT4G05000 Arabidopsis thaliana HOM05D003416 ORTHO05D003886 6.3e-21 104.8 208 38.5
Lalb_Chr16g0383421 Lupinus albus HOM05D003416 ORTHO05D003886 6.3e-21 104.8 213 35.2
Manes.17G039800 Manihot esculenta HOM05D003416 ORTHO05D003886 6.3e-21 104.8 210 36.2
Nitab4.5_0002347g0010 Nicotiana tabacum HOM05D003416 ORTHO05D003886 6.3e-21 104.8 210 35.7
Peaxi162Scf00262g00025 Petunia axillaris HOM05D003416 ORTHO05D003886 6.3e-21 104.8 210 35.7
THA.LOC104806278 Tarenaya hassleriana HOM05D003416 ORTHO05D003886 6.3e-21 104.8 210 38.1
TWI38G1155 Tripterygium wilfordii HOM05D003416 ORTHO05D003886 6.3e-21 104.8 210 36.2
VMungo0251G1450 Vigna mungo HOM05D003416 ORTHO05D003886 6.3e-21 104.8 210 35.7
Dinv40502 Davidia involucrata HOM05D003416 ORTHO05D003886 8.2e-21 104.4 210 36.2
Glyma.07G191000 Glycine max HOM05D003416 ORTHO05D003886 8.2e-21 104.4 208 35.6
Glyma.08G058200 Glycine max HOM05D003416 ORTHO05D003886 8.2e-21 104.4 210 35.2
Sp6g03940 Schrenkiella parvula HOM05D003416 ORTHO05D003886 8.2e-21 104.4 208 38.5
A09p25820 Brassica napus HOM05D003416 ORTHO05D003886 1.1e-20 104.0 208 36.5
BolC1t01502H Brassica oleracea HOM05D003416 ORTHO05D003886 1.1e-20 104.0 208 38.0
CsaV3_6G049840 Cucumis sativus L. HOM05D003416 ORTHO05D003886 1.1e-20 104.0 210 36.2
Lj1P1227T90 Lonicera japonica HOM05D003416 ORTHO05D003886 1.1e-20 104.0 210 35.2
Sed0023652 Sechium edule HOM05D003416 ORTHO05D003886 1.1e-20 104.0 210 35.7
MSTRG.13154 Avicennia marina HOM05D003416 ORTHO05D003886 1.4e-20 103.6 210 37.6
BraA09t38152Z Brassica rapa HOM05D003416 ORTHO05D003886 1.4e-20 103.6 210 36.2
Gorai.011G022200 Gossypium raimondii HOM05D003416 ORTHO05D003886 1.4e-20 103.6 207 37.2
Nitab4.5_0003893g0020 Nicotiana tabacum HOM05D003416 ORTHO05D003886 1.4e-20 103.6 210 35.2
Aa31LG9G9440 Aethionema arabicum HOM05D003416 ORTHO05D003886 1.8e-20 103.2 210 35.7
A08p15110 Brassica napus HOM05D003416 ORTHO05D003886 1.8e-20 103.2 208 35.6
BolC3t20607H Brassica oleracea HOM05D003416 ORTHO05D003886 1.8e-20 103.2 208 35.6
BraA08t33491Z Brassica rapa HOM05D003416 ORTHO05D003886 1.8e-20 103.2 208 35.6
CARHR228240 Cardamine hirsuta HOM05D003416 ORTHO05D003886 1.8e-20 103.2 208 37.0
DCAR_008128 Daucus carota HOM05D003416 ORTHO05D003886 1.8e-20 103.2 208 35.1
Potri.011G043800 Populus trichocarpa HOM05D003416 ORTHO05D003886 1.8e-20 103.2 210 35.7
Ah.09g236060 Amaranthus hybridus HOM05D003416 ORTHO05D003886 2.4e-20 102.8 210 35.2
AL6G48580 Arabidopsis lyrata HOM05D003416 ORTHO05D003886 2.4e-20 102.8 208 35.6
BcaB01g01862 Brassica carinata HOM05D003416 ORTHO05D003886 2.4e-20 102.8 208 35.6
Carub.0006s3297 Capsella rubella HOM05D003416 ORTHO05D003886 2.4e-20 102.8 207 38.2
Cc02_g11530 Coffea canephora HOM05D003416 ORTHO05D003886 2.4e-20 102.8 210 35.7
ECA240G1907 Erigeron canadensis HOM05D003416 ORTHO05D003886 2.4e-20 102.8 210 35.7
Thhalv10028962m.g Eutrema salsugineum HOM05D003416 ORTHO05D003886 2.4e-20 102.8 208 35.1
Oeu033889.1 Olea europaea HOM05D003416 ORTHO05D003886 2.4e-20 102.8 210 35.2
Aa31LG6G3570 Aethionema arabicum HOM05D003416 ORTHO05D003886 3.1e-20 102.4 208 34.1
MELO3C007312.2 Cucumis melo HOM05D003416 ORTHO05D003886 3.1e-20 102.4 209 35.9
PGR042G3105 Punica granatum HOM05D003416 ORTHO05D003886 3.1e-20 102.4 210 35.2
Sabra04G0021300 Salix brachista HOM05D003416 ORTHO05D003886 3.1e-20 102.4 209 35.4
MSTRG.7233 Avicennia marina HOM05D003416 ORTHO05D003886 4.1e-20 102.1 210 35.7
EL10Ac8g20617 Beta vulgaris HOM05D003416 ORTHO05D003886 4.1e-20 102.1 208 35.6
TWI38G0839 Tripterygium wilfordii HOM05D003416 ORTHO05D003886 4.1e-20 102.1 210 37.6
ClCG01G022650 Citrullus lanatus HOM05D003416 ORTHO05D003886 5.3e-20 101.7 208 35.6
Oeu033054.1 Olea europaea HOM05D003416 ORTHO05D003886 5.3e-20 101.7 210 35.2
QL05p081861 Quercus lobata HOM05D003416 ORTHO05D003886 5.3e-20 101.7 206 34.0
HanXRQChr12g0354091 Helianthus annuus HOM05D003416 ORTHO05D003886 9.1e-20 100.9 207 35.3
arahy.Tifrunner.gnm1.ann1.UIJ4RE Arachis hypogaea HOM05D003416 ORTHO05D003886 1.2e-19 100.5 210 35.2
EL10Ac9g22917 Beta vulgaris HOM05D003416 ORTHO05D003886 1.5e-19 100.1 208 35.6
MSTRG.14644 Avicennia marina HOM05D003416 ORTHO05D003886 2.0e-19 99.8 210 34.3
BolC9t56114H Brassica oleracea HOM05D003416 ORTHO05D003886 2.0e-19 99.8 210 35.2
BcaC04g21363 Brassica carinata HOM05D003416 ORTHO05D003886 3.5e-19 99.0 208 35.1
C09p32700 Brassica napus HOM05D003416 ORTHO05D003886 3.5e-19 99.0 208 35.1
Prupe.4G035900 Prunus persica HOM05D003416 ORTHO05D003886 3.5e-19 99.0 210 35.7
PGSC0003DMG400024059 Solanum tuberosum HOM05D003416 ORTHO05D003886 3.5e-19 99.0 210 35.2
arahy.Tifrunner.gnm1.ann1.0PJ706 Arachis hypogaea HOM05D003416 ORTHO05D003886 4.5e-19 98.6 210 34.3
Nitab4.5_0009389g0010 Nicotiana tabacum HOM05D003416 ORTHO05D003886 4.5e-19 98.6 210 33.8
MD10G1302300 Malus domestica HOM05D003416 ORTHO05D003886 5.9e-19 98.2 210 35.7
Nitab4.5_0003343g0050 Nicotiana tabacum HOM05D003416 ORTHO05D003886 5.9e-19 98.2 212 33.0
Solyc03g031750.2 Solanum lycopersicum HOM05D003416 ORTHO05D003886 5.9e-19 98.2 210 33.8
Sopen03g005610 Solanum pennellii HOM05D003416 ORTHO05D003886 5.9e-19 98.2 210 33.8
Migut.M01295 Erythranthe guttata HOM05D003416 ORTHO05D003886 7.7e-19 97.8 210 33.8
MD05G1324500 Malus domestica HOM05D003416 ORTHO05D003886 1.3e-18 97.1 210 35.2
ATR1149G025 Amborella trichopoda HOM05D003416 ORTHO05D003886 1.7e-18 96.7 206 34.0
Aqoxy1G02754 Aquilegia oxysepala HOM05D003416 ORTHO05D003886 3.8e-18 95.5 204 35.8
unitig_26.g9391 Utricularia gibba HOM05D003416 ORTHO05D003886 6.5e-18 94.7 208 34.1
Peaxi162Scf00079g00103 Petunia axillaris HOM05D003416 ORTHO05D003886 8.5e-18 94.4 208 32.7
CAN.G404.14 Capsicum annuum HOM05D003416 ORTHO05D003886 1.9e-17 93.2 210 34.8
SGA_v2.0_scaffold89G27453 Striga asiatica HOM05D003416 ORTHO05D003886 2.5e-17 92.8 206 34.5
Mapoly0186s0005 Marchantia polymorpha HOM05D003416 ORTHO05D003886 9.4e-17 90.9 207 32.9
BcaNung02782 Brassica carinata HOM05D003416 ORTHO05D003886 1.2e-16 90.5 198 36.4
Gohir.D06G211700 Gossypium hirsutum HOM05D003416 ORTHO05D003886 1.6e-16 90.1 203 34.0
Gorai.010G254500 Gossypium raimondii HOM05D003416 ORTHO05D003886 1.6e-16 90.1 203 34.0
SMO137G0066 Selaginella moellendorffii HOM05D003416 ORTHO05D003886 2.1e-16 89.7 206 33.5
Haze_06563 Corylus avellana HOM05D003416 ORTHO05D003886 4.7e-16 88.6 52 80.8
Gohir.A06G209300 Gossypium hirsutum HOM05D003416 ORTHO05D003886 4.7e-16 88.6 203 33.5
CBR_g51799 Chara braunii HOM05D003416 ORTHO05D003886 6.1e-16 88.2 210 29.0
SEGI_02597 Sequoiadendron giganteum HOM05D003416 ORTHO05D003886 6.1e-16 88.2 209 30.6
Zm00001eb151450 Zea mays HOM05D003416 ORTHO05D003886 1.0e-15 87.4 212 31.6
Zm00001eb369840 Zea mays HOM05D003416 ORTHO05D003886 1.0e-15 87.4 212 31.6
AagrBONN_evm.TU.Sc2ySwM_228.2425 Anthoceros agrestis HOM05D003416 ORTHO05D003886 2.3e-15 86.3 204 31.9
Os01g0781000 Oryza sativa ssp. japonica HOM05D003416 ORTHO05D003886 3.0e-15 85.9 212 31.1
Rhsim13G0173800 Rhododendron simsii HOM05D003416 ORTHO05D003886 5.2e-15 85.1 50 80.0
CARHR252530 Cardamine hirsuta HOM05D003416 ORTHO05D003886 6.7e-15 84.7 50 80.0
BcaC01g00693 Brassica carinata HOM05D003416 ORTHO05D003886 1.1e-14 84.0 50 74.0
C03p83260 Brassica napus HOM05D003416 ORTHO05D003886 1.1e-14 84.0 50 74.0
Sopen02g024980 Solanum pennellii HOM05D003416 ORTHO05D003886 1.1e-14 84.0 54 72.2
CARHR120800 Cardamine hirsuta HOM05D003416 ORTHO05D003886 2.0e-14 83.2 50 78.0
Gohir.D10G021100 Gossypium hirsutum HOM05D003416 ORTHO05D003886 2.6e-14 82.8 49 77.6
Pp3c14_20060 Physcomitrium patens HOM05D003416 ORTHO05D003886 9.7e-14 80.9 204 28.9
Ah.14g088960 Amaranthus hybridus HOM05D003416 ORTHO05D003886 1.7e-13 80.1 61 65.6
Pp3c17_18750 Physcomitrium patens HOM05D003416 ORTHO05D003886 1.7e-13 80.1 204 29.4
FAN12G4105 Fragaria x ananassa HOM05D003416 ORTHO05D003886 2.8e-13 79.3 194 33.0
Nn1g06746 Nelumbo nucifera HOM05D003416 ORTHO05D003886 2.4e-12 76.3 207 31.4
Lalb_Chr05g0218201 Lupinus albus HOM05D003416 ORTHO05D003886 1.7e-10 70.1 37 83.8
SalBow4G0583 Salvia bowleyana HOM05D003416 ORTHO05D003886 1.7e-10 70.1 133 42.9
SalBow4G1647 Salvia bowleyana HOM05D003416 ORTHO05D003886 1.7e-10 70.1 133 42.9
Rhsim02G0120300 Rhododendron simsii HOM05D002725 ORTHO05D003279 1.5e-09 67.0 82 48.8
HPP92_001809 Vanilla planifolia HOM05D000461 ORTHO05D009042 4.2e-09 65.5 35 82.9
Sed0016121 Sechium edule HOM05D003416 ORTHO05D003886 5.5e-09 65.1 49 65.3
FAN12G1347 Fragaria x ananassa HOM05D003416 ORTHO05D003886 2.1e-08 63.2 50 62.0
FvH4_4g26030 Fragaria vesca HOM05D003416 ORTHO05D003886 4.7e-08 62.0 46 65.2
AL3G24960 Arabidopsis lyrata HOM05D003416 ORTHO05D003886 6.1e-08 61.6 35 77.1
ECA232G0033 Erigeron canadensis HOM05D000178 ORTHO05D000229 6.1e-08 61.6 36 83.3
PRCOL_00004236 Prasinoderma coloniale HOM05D003416 ORTHO05D003886 8.0e-08 61.2 208 26.0
CARHR215970 Cardamine hirsuta HOM05D003416 ORTHO05D003886 3.0e-07 59.3 38 78.9
FAN22G2081 Fragaria x ananassa HOM05D003416 ORTHO05D003886 3.0e-07 59.3 34 76.5


User provided reference genes

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