Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 1.6e-212 742.7 428 100.0
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 4.2e-75 286.2 365 44.7
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 2.0e-69 267.3 313 48.9
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 5.8e-69 265.8 346 43.1
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 3.2e-67 260.0 343 43.1
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.5e-66 256.5 359 41.5
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.8e-65 254.2 355 42.0
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 1.5e-64 251.1 366 41.8
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 3.3e-64 250.0 342 41.8
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 5.7e-64 249.2 369 41.5
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 5.7e-64 249.2 348 42.2
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 9.7e-64 248.4 360 40.8
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.3e-63 248.1 392 38.3
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 2.8e-63 246.9 362 40.9
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 4.8e-63 246.1 345 40.6
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 4.8e-63 246.1 344 40.1
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.1e-62 245.0 349 39.3
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.4e-62 244.6 361 39.1
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.1e-62 243.0 356 37.9
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 4.1e-62 243.0 375 37.1
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 5.3e-62 242.7 393 38.2
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 5.3e-62 242.7 361 40.7
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 1.2e-61 241.5 365 40.0
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 1.0e-60 238.4 350 40.3
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 3.8e-60 236.5 355 38.9
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 3.8e-60 236.5 352 37.2
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 5.0e-60 236.1 383 39.4
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 8.5e-60 235.3 353 39.7
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-59 235.0 353 39.7
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.1e-59 235.0 360 38.1
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.4e-59 234.6 353 39.9
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.4e-59 234.6 348 39.9
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 1.9e-59 234.2 343 39.7
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.5e-59 233.8 355 37.7
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.5e-59 233.8 368 39.7
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.2e-59 233.4 333 39.3
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 3.2e-59 233.4 367 37.9
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.2e-59 233.0 353 39.4
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 4.2e-59 233.0 348 39.9
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 9.4e-59 231.9 357 36.7
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.2e-58 231.5 374 37.2
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 1.2e-58 231.5 350 39.1
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 1.6e-58 231.1 371 39.1
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.1e-58 230.7 313 44.1
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.7e-58 230.3 381 38.8
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 3.6e-58 229.9 359 38.2
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.0e-57 228.4 357 40.3
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.4e-57 228.0 363 38.3
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 2.3e-57 227.3 354 37.9
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 2.3e-57 227.3 354 37.9
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 2.3e-57 227.3 353 38.5
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 5.1e-57 226.1 340 38.5
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 6.7e-57 225.7 332 39.2
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 8.8e-57 225.3 343 36.4
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 2.0e-56 224.2 357 35.6
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 4.3e-56 223.0 355 36.9
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.3e-55 221.5 346 38.4
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.7e-55 221.1 324 40.7
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.8e-55 220.3 360 38.9
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 3.7e-55 219.9 348 38.2
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 1.8e-54 217.6 386 36.5
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 2.4e-54 217.2 358 36.9
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 2.4e-54 217.2 358 36.9
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 3.1e-54 216.9 373 35.9
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 3.1e-54 216.9 322 39.4
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 5.3e-54 216.1 349 35.8
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 9.1e-54 215.3 364 36.8
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 2.0e-53 214.2 360 36.4
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.6e-53 213.8 340 40.3
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 2.6e-53 213.8 376 34.3
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 3.4e-53 213.4 335 37.3
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 6.5e-52 209.1 324 38.3
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.4e-51 208.0 359 36.2
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.9e-51 207.6 356 36.2
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 2.1e-50 204.1 369 36.6
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 6.1e-50 202.6 349 34.4
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 7.9e-50 202.2 360 34.4
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.8e-49 201.1 352 34.7
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 3.0e-49 200.3 375 34.9
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 3.0e-49 200.3 337 35.6
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 5.1e-49 199.5 356 34.3
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 6.7e-49 199.1 354 34.7
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.5e-48 198.0 347 34.0
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 2.0e-48 197.6 362 34.0
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 9.1e-46 188.7 360 32.8
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.0e-45 187.6 188 50.5
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 2.0e-45 187.6 382 32.2
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 3.5e-45 186.8 270 40.7
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.3e-44 184.9 186 49.5
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.1e-43 181.8 178 51.1
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.8e-41 174.5 345 32.8
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 3.0e-41 173.7 303 36.3
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 3.3e-40 170.2 416 30.3
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 5.7e-40 169.5 361 32.7
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 2.8e-39 167.2 355 32.1
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.7e-36 157.9 186 43.0
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 2.1e-34 151.0 319 33.9
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 3.6e-34 150.2 310 31.0
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.4e-30 138.3 150 48.0
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 3.1e-30 137.1 145 49.7
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 8.5e-28 129.0 160 43.8
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.1e-27 128.6 290 33.8
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.5e-19 100.9 99 48.5
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 3.6e-18 97.1 101 44.6
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 8.9e-17 92.4 86 47.7
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.4e-16 90.1 85 48.2
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.5e-16 89.4 110 43.6
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 2.4e-14 84.3 108 46.3
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 5.4e-14 83.2 158 33.5
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 9.2e-14 82.4 266 26.7
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 2.7e-13 80.9 83 45.8
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 2.9e-12 77.4 85 42.4
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 3.9e-12 77.0 118 37.3
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.5e-11 75.1 124 35.5
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 4.3e-11 73.6 89 44.9
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 7.3e-11 72.8 103 38.8
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 9.5e-11 72.4 84 44.0
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.2e-10 72.0 168 31.5
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 4.7e-10 70.1 92 39.1
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 8.0e-10 69.3 92 39.1
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 1.4e-09 68.6 89 39.3
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.8e-09 68.2 88 40.9
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 5.2e-09 66.6 95 42.1
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.2e-08 65.5 81 40.7
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 2.6e-08 64.3 89 37.1
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 4.4e-08 63.5 60 50.0
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.9e-07 60.1 86 37.2
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 1.1e-06 58.9 103 35.9
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 4.1e-06 57.0 45 46.7
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 4.1e-06 57.0 61 50.8
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 4.1e-06 57.0 90 32.2


User provided reference genes

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