Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.2e-146 522.3 272 100.0
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 4.5e-115 418.3 236 93.2
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 2.2e-106 389.4 275 76.0
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 8.5e-106 387.5 274 75.5
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 4.2e-105 385.2 273 75.5
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 4.6e-104 381.7 274 75.2
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 4.6e-104 381.7 275 75.6
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 4.6e-104 381.7 274 74.5
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 3.0e-103 379.0 269 74.3
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 3.9e-103 378.6 275 75.3
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.5e-102 376.7 279 72.8
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.5e-102 375.9 273 74.0
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.5e-102 375.9 276 74.6
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 5.7e-102 374.8 274 73.0
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 7.4e-102 374.4 276 73.2
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 9.7e-102 374.0 279 74.9
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 9.7e-102 374.0 271 76.0
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.2e-101 372.9 272 72.1
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 2.8e-101 372.5 271 74.9
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 4.8e-101 371.7 278 70.5
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 6.3e-101 371.3 277 71.8
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 6.3e-101 371.3 274 76.3
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.1e-100 370.5 277 71.5
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.1e-100 370.5 277 71.5
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.1e-100 370.5 272 72.1
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.8e-100 369.8 279 70.6
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 1.8e-100 369.8 284 73.6
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.4e-100 369.4 272 72.1
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 2.4e-100 369.4 270 74.8
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 3.1e-100 369.0 278 71.2
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 3.1e-100 369.0 278 73.0
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 4.1e-100 368.6 277 71.5
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 4.1e-100 368.6 270 74.1
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 5.3e-100 368.2 274 73.7
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 6.9e-100 367.9 284 70.4
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 6.9e-100 367.9 274 74.8
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 9.1e-100 367.5 273 72.2
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 9.1e-100 367.5 273 72.2
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 9.1e-100 367.5 277 71.5
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 9.1e-100 367.5 273 72.5
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.5e-99 366.7 275 72.7
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.5e-99 366.7 279 70.3
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.5e-99 366.7 279 70.3
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.5e-99 366.7 273 72.9
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 2.6e-99 365.9 275 72.4
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 2.6e-99 365.9 281 71.5
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 2.6e-99 365.9 274 73.0
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.6e-99 365.9 271 71.2
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 4.5e-99 365.2 273 74.0
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.5e-99 365.2 280 70.4
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 4.5e-99 365.2 281 71.2
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 4.5e-99 365.2 279 70.3
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 4.5e-99 365.2 274 73.4
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 4.5e-99 365.2 270 74.8
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 5.9e-99 364.8 284 71.5
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 5.9e-99 364.8 273 72.5
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 7.7e-99 364.4 274 73.4
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 7.7e-99 364.4 275 73.1
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.0e-98 364.0 244 79.9
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.0e-98 364.0 284 70.4
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.3e-98 363.6 278 71.6
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.7e-98 363.2 273 73.6
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.2e-98 362.8 258 74.8
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.2e-98 362.8 277 70.4
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 2.2e-98 362.8 273 72.9
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.8e-98 362.1 275 72.4
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 3.8e-98 362.1 256 76.6
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 5.0e-98 361.7 274 71.2
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.5e-98 361.3 277 69.7
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 8.5e-98 360.9 277 70.0
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 2.5e-97 359.4 287 67.2
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 3.2e-97 359.0 274 71.5
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 5.5e-97 358.2 274 71.2
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 7.2e-97 357.8 274 71.2
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 7.2e-97 357.8 274 71.2
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 7.2e-97 357.8 274 71.2
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 7.2e-97 357.8 274 71.2
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 7.2e-97 357.8 274 71.5
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 7.2e-97 357.8 228 83.3
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 2.1e-96 356.3 274 70.8
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 2.1e-96 356.3 217 82.5
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 2.1e-96 356.3 217 82.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 2.1e-96 356.3 272 71.7
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 3.6e-96 355.5 274 71.2
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 3.6e-96 355.5 274 70.8
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 3.6e-96 355.5 274 70.8
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 3.6e-96 355.5 274 71.5
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 3.6e-96 355.5 273 71.1
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 4.7e-96 355.1 274 70.8
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 4.7e-96 355.1 274 70.8
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 4.7e-96 355.1 274 70.8
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 6.1e-96 354.8 274 70.8
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 7.9e-96 354.4 277 70.8
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 7.9e-96 354.4 281 69.0
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 7.9e-96 354.4 282 68.8
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.0e-95 354.0 272 70.2
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.0e-95 354.0 252 75.0
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.4e-95 353.6 277 69.0
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 2.3e-95 352.8 274 70.4
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.3e-95 352.8 279 68.8
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.0e-95 352.4 198 86.9
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 3.9e-95 352.1 275 70.9
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 5.1e-95 351.7 253 73.5
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 8.8e-95 350.9 273 70.7
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 8.8e-95 350.9 200 86.5
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 1.1e-94 350.5 280 70.0
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.5e-94 350.1 195 90.3
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 2.6e-94 349.4 219 80.8
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.6e-94 349.4 218 81.2
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 2.6e-94 349.4 279 68.1
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 4.4e-94 348.6 274 70.1
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 5.7e-94 348.2 278 71.2
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 4.8e-93 345.1 278 71.2
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 3.1e-92 342.4 282 68.1
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.6e-91 340.1 273 70.3
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 4.5e-91 338.6 195 86.2
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.6e-88 330.1 273 67.4
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 3.6e-88 328.9 274 67.9
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.3e-85 320.5 196 80.6
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 3.7e-85 318.9 284 62.7
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 4.8e-85 318.5 293 62.8
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 2.0e-78 296.6 225 67.1
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.8e-76 290.0 169 84.6
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 1.8e-63 246.9 161 78.3
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 8.9e-63 244.6 134 91.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 6.4e-61 238.4 161 72.0
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 2.4e-60 236.5 195 68.7
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 1.9e-57 226.9 198 66.2
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.8e-55 220.3 165 66.1
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.2e-54 217.6 199 62.8
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 9.8e-46 188.0 233 52.4
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.4e-44 183.3 124 76.6
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 7.6e-38 161.8 96 81.2
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 5.4e-36 155.6 96 86.5
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.2e-36 154.8 222 44.6
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.2e-36 154.8 222 44.6
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.3e-34 151.0 233 45.5
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.4e-20 104.4 81 72.8
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 4.5e-14 82.8 114 49.1
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.7e-11 73.6 141 34.8
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 4.6e-11 72.8 194 32.0
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.5e-09 67.0 37 83.8
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.3e-08 64.7 37 83.8
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 4.0e-07 59.7 60 48.3


User provided reference genes

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