Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 0.0e+00 2281.1 1193 100.0
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1224.9 1352 52.7
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1216.1 1356 51.8
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1198.7 1350 51.0
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1193.3 1350 51.0
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1188.7 1348 52.2
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1177.9 1352 51.2
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1164.4 1342 51.9
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1158.3 1338 51.2
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1145.2 1355 49.7
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1142.5 1326 51.4
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1138.3 1348 50.1
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1135.6 1357 50.5
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1132.5 1352 49.3
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1125.2 1342 50.4
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1123.2 1339 49.4
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1123.2 1347 49.7
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1120.1 1339 49.4
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1117.8 1280 52.1
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1115.5 1343 50.0
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1115.1 1350 48.9
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1111.3 1322 49.8
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1110.5 1346 49.0
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1109.7 1364 49.5
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1109.7 1328 49.8
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1108.2 1371 49.2
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1107.4 1316 49.8
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1105.1 1349 49.4
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1102.0 1332 50.2
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1097.0 1341 49.4
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1095.5 1285 50.0
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1093.6 1332 48.6
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1092.8 1312 50.1
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1087.4 1332 48.8
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1086.6 1331 48.8
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1084.7 1263 50.1
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1084.3 1262 50.2
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1079.7 1340 47.4
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1078.5 1339 48.5
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1078.2 1308 49.5
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1076.2 1302 49.6
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 2.0e-308 1062.8 1367 48.6
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 1.3e-307 1060.1 1336 48.9
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 3.7e-307 1058.5 1297 49.0
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 7.1e-306 1054.3 1328 48.4
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 2.1e-305 1052.7 1342 46.3
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 6.0e-305 1051.2 1352 46.2
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 1.5e-303 1046.6 1342 46.6
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 1.9e-303 1046.2 1331 47.9
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 2.1e-302 1042.7 1359 46.7
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 8.1e-302 1040.8 1331 47.9
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 1.2e-300 1036.9 1333 46.7
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 3.4e-300 1035.4 1293 47.7
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 1.7e-299 1033.1 1342 45.8
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 4.6e-297 1025.0 1336 46.1
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 1.0e-296 1023.8 1336 45.7
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 2.3e-296 1022.7 1283 48.6
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 3.0e-296 1022.3 1268 47.7
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 5.1e-296 1021.5 1336 46.0
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 9.6e-295 1017.3 1334 46.4
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 8.1e-294 1014.2 1362 46.4
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 1.8e-293 1013.1 1344 45.3
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 3.1e-293 1012.3 1265 47.2
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 5.2e-293 1011.5 1298 46.9
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 1.5e-292 1010.0 1273 48.0
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 2.0e-292 1009.6 1342 46.3
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 2.6e-292 1009.2 1345 46.4
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 3.4e-292 1008.8 1273 47.8
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 3.8e-291 1005.4 1338 46.5
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 1.9e-290 1003.0 1334 46.7
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 4.2e-290 1001.9 1199 49.5
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 5.4e-290 1001.5 1296 46.5
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 9.3e-290 1000.7 1276 46.9
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 9.3e-290 1000.7 1224 48.4
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 1.6e-289 1000.0 1311 45.8
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 2.1e-289 999.6 1268 47.2
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 6.0e-289 998.0 1199 49.4
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 1.3e-288 996.9 1314 46.0
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 1.3e-288 996.9 1269 47.4
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 1.1e-287 993.8 1324 47.6
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 1.4e-285 986.9 1268 48.2
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 1.2e-284 983.8 1273 47.3
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 2.4e-282 976.1 1345 44.2
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 4.2e-282 975.3 1163 48.7
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.3e-280 969.5 1289 45.6
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 6.7e-280 968.0 1332 44.1
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 3.2e-274 949.1 1307 46.1
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 3.0e-272 942.6 1374 42.5
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 7.4e-271 937.9 1263 46.3
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.8e-269 933.3 1128 49.7
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 2.2e-267 926.4 1219 48.2
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 2.6e-260 902.9 1275 44.2
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 7.2e-258 894.8 1201 46.5
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 1.1e-255 887.5 1212 46.1
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 3.7e-254 882.5 1070 49.6
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 4.1e-253 879.0 1247 46.3
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 3.8e-251 872.5 1050 49.4
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 1.2e-249 867.5 1359 40.0
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 1.0e-243 847.8 1274 43.5
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 4.7e-241 839.0 1061 48.1
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.1e-221 773.1 1292 40.4
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 2.6e-215 753.4 958 47.1
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 2.2e-206 723.8 945 45.4
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 6.2e-201 705.7 1429 35.8
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 5.2e-200 702.6 906 46.6
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.1e-197 694.9 1011 42.5
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 2.5e-194 683.7 1035 42.4
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.7e-187 661.0 760 50.9
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 9.6e-178 628.6 1430 34.2
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 2.6e-175 620.5 759 47.8
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.6e-175 619.0 1079 39.4
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.6e-167 592.4 694 49.9
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 3.5e-164 583.6 796 45.6
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.5e-162 578.2 817 44.7
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.6e-145 521.5 1050 37.0
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 7.9e-140 502.7 1040 34.4
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 1.4e-115 422.2 584 44.7
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.4e-114 417.5 488 50.8
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 1.0e-110 406.0 1502 26.0
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 2.0e-103 381.7 396 55.1
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 1.3e-102 379.0 406 54.4
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.2e-101 373.2 435 50.8
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.6e-100 372.1 284 69.0
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 1.2e-79 302.8 332 53.9
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.8e-79 300.1 314 52.5
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.9e-69 268.9 296 54.1
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 2.7e-63 248.4 445 38.9
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 5.6e-53 214.2 265 50.6
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 7.9e-47 193.7 292 39.4
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 2.2e-41 175.6 1252 22.4
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 5.1e-38 164.5 159 54.1
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 5.9e-34 151.0 160 51.2
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 3.0e-30 138.7 106 66.0
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 1.5e-29 136.3 113 66.4
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.8e-28 131.3 134 56.7
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.8e-27 129.4 502 27.5
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 3.6e-23 115.2 112 56.2
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.7e-20 106.3 202 35.1
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 4.1e-19 101.7 107 52.3
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 2.6e-13 82.4 65 64.6
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 5.9e-10 71.2 46 78.3
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.7e-10 70.9 68 55.9
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.9e-09 68.9 81 49.4
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.9e-09 68.9 81 49.4
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 5.2e-06 58.2 39 69.2


User provided reference genes

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