Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8603 Chara braunii HOM05D000880 ORTHO05D007053 1.4e-253 879.8 693 100.0
Mapoly0009s0235 Marchantia polymorpha HOM05D000880 ORTHO05D007053 4.0e-83 313.5 699 33.3
AagrBONN_evm.TU.Sc2ySwM_117.410 Anthoceros agrestis HOM05D000880 ORTHO05D007053 1.7e-78 298.1 692 33.7
ATR0057G121 Amborella trichopoda HOM05D000880 ORTHO05D007053 6.1e-76 289.7 704 31.8
Pp3c14_20420 Physcomitrium patens HOM05D000880 ORTHO05D007053 1.4e-75 288.5 694 32.7
PSO384G2678 Papaver somniferum HOM05D000880 ORTHO05D007053 4.0e-75 287.0 704 31.0
Prupe.8G262200 Prunus persica HOM05D000880 ORTHO05D007053 4.0e-75 287.0 692 31.5
PSO339G1812 Papaver somniferum HOM05D000880 ORTHO05D007053 1.2e-74 285.4 705 30.8
MD03G1288900 Malus domestica HOM05D000880 ORTHO05D007053 1.5e-74 285.0 694 31.0
Manes.05G061800 Manihot esculenta HOM05D000880 ORTHO05D007053 7.5e-74 282.7 694 30.3
Haze_04945 Corylus avellana HOM05D000880 ORTHO05D007053 1.3e-73 282.0 702 31.1
PGR044G2013 Punica granatum HOM05D000880 ORTHO05D007053 1.3e-73 282.0 692 30.6
BolC8t50508H Brassica oleracea HOM05D000880 ORTHO05D007053 1.7e-73 281.6 693 30.0
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.8e-73 280.8 698 31.1
RcHm_v2.0_Chr6g0294121 Rosa chinensis HOM05D000880 ORTHO05D007053 3.7e-73 280.4 692 30.1
Thecc.01G301400 Theobroma cacao HOM05D000880 ORTHO05D007053 4.9e-73 280.0 706 30.6
BcaC07g39735 Brassica carinata HOM05D000880 ORTHO05D007053 8.3e-73 279.3 693 30.0
C08p29070 Brassica napus HOM05D000880 ORTHO05D007053 8.3e-73 279.3 693 30.0
FvH4_2g25810 Fragaria vesca HOM05D000880 ORTHO05D007053 1.4e-72 278.5 698 31.1
Cfa005905 Carpinus fangiana HOM05D000880 ORTHO05D007053 2.4e-72 277.7 702 30.8
GSVIVG01028027001 Vitis vinifera HOM05D000880 ORTHO05D007053 3.1e-72 277.3 692 30.5
Ciclev10018978m.g Citrus clementina HOM05D000880 ORTHO05D007053 4.1e-72 276.9 692 29.9
Thhalv10010145m.g Eutrema salsugineum HOM05D000880 ORTHO05D007053 4.1e-72 276.9 692 30.2
SMO364G0941 Selaginella moellendorffii HOM05D000880 ORTHO05D007053 4.1e-72 276.9 695 31.7
COL.COLO4_23337 Corchorus olitorius HOM05D000880 ORTHO05D007053 9.1e-72 275.8 692 30.1
Potri.014G128400 Populus trichocarpa HOM05D000880 ORTHO05D007053 1.6e-71 275.0 698 29.2
A09p46740 Brassica napus HOM05D000880 ORTHO05D007053 2.0e-71 274.6 693 29.6
Gohir.D11G119200 Gossypium hirsutum HOM05D000880 ORTHO05D007053 2.0e-71 274.6 700 30.0
Aqoxy2G02934 Aquilegia oxysepala HOM05D000880 ORTHO05D007053 3.5e-71 273.9 710 30.0
AL5G34740 Arabidopsis lyrata HOM05D000880 ORTHO05D007053 3.5e-71 273.9 693 29.9
MELO3C026912.2 Cucumis melo HOM05D000880 ORTHO05D007053 4.5e-71 273.5 700 30.3
Eucgr.K03489 Eucalyptus grandis HOM05D000880 ORTHO05D007053 5.9e-71 273.1 693 30.7
TWI59G0706 Tripterygium wilfordii HOM05D000880 ORTHO05D007053 7.7e-71 272.7 694 30.0
Gorai.007G127700 Gossypium raimondii HOM05D000880 ORTHO05D007053 1.0e-70 272.3 700 29.9
Gohir.A11G114100 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.3e-70 271.9 699 30.2
BcaB01g00245 Brassica carinata HOM05D000880 ORTHO05D007053 1.7e-70 271.6 695 29.5
THA.LOC104802176 Tarenaya hassleriana HOM05D000880 ORTHO05D007053 2.3e-70 271.2 695 29.9
Actinidia01490 Actinidia chinensis HOM05D000880 ORTHO05D007053 2.9e-70 270.8 692 31.1
Carub.0005s2034 Capsella rubella HOM05D000880 ORTHO05D007053 2.9e-70 270.8 693 29.7
CARHR163650 Cardamine hirsuta HOM05D000880 ORTHO05D007053 2.9e-70 270.8 693 29.9
MELO3C015161.2 Cucumis melo HOM05D000880 ORTHO05D007053 2.9e-70 270.8 700 30.3
AT3G53760 Arabidopsis thaliana HOM05D000880 ORTHO05D007053 3.8e-70 270.4 693 29.7
CAN.G472.10 Capsicum annuum HOM05D000880 ORTHO05D007053 3.8e-70 270.4 695 29.4
Hund05431 Selenicereus undatus HOM05D000880 ORTHO05D007053 3.8e-70 270.4 692 29.9
Glyma.10G017800 Glycine max HOM05D000880 ORTHO05D007053 5.0e-70 270.0 693 29.0
Cc01_g20910 Coffea canephora HOM05D000880 ORTHO05D007053 6.6e-70 269.6 701 30.0
Sc05g0003770 Simmondsia chinensis HOM05D000880 ORTHO05D007053 6.6e-70 269.6 692 30.9
Zm00001eb282720 Zea mays HOM05D000880 ORTHO05D007053 6.6e-70 269.6 709 30.2
CsaV3_1G043050 Cucumis sativus L. HOM05D000880 ORTHO05D007053 1.1e-69 268.9 700 30.0
Solyc09g075190.3 Solanum lycopersicum HOM05D000880 ORTHO05D007053 1.1e-69 268.9 695 29.5
VMungo0720G1277 Vigna mungo HOM05D000880 ORTHO05D007053 1.1e-69 268.9 693 29.3
Sp5g08620 Schrenkiella parvula HOM05D000880 ORTHO05D007053 1.9e-69 268.1 693 29.1
HPP92_007056 Vanilla planifolia HOM05D000880 ORTHO05D007053 1.9e-69 268.1 700 30.0
Sopen09g030010 Solanum pennellii HOM05D000880 ORTHO05D007053 2.5e-69 267.7 695 29.4
Rhsim13G0009800 Rhododendron simsii HOM05D000880 ORTHO05D007053 3.3e-69 267.3 694 30.0
SalBow3G0448 Salvia bowleyana HOM05D000880 ORTHO05D007053 3.3e-69 267.3 694 30.1
Psat6g165160 Pisum sativum HOM05D000880 ORTHO05D007053 5.6e-69 266.5 693 29.9
Lj5g0001867 Lotus japonicus HOM05D000880 ORTHO05D007053 7.2e-69 266.2 692 29.2
Phvul.007G147200 Phaseolus vulgaris HOM05D000880 ORTHO05D007053 7.2e-69 266.2 693 29.3
Sed0026689 Sechium edule HOM05D000880 ORTHO05D007053 7.2e-69 266.2 703 29.3
CSS0009761 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D007053 9.5e-69 265.8 695 31.1
Glyma.02G017400 Glycine max HOM05D000880 ORTHO05D007053 9.5e-69 265.8 693 28.7
Medtr1g088410 Medicago truncatula HOM05D000880 ORTHO05D007053 9.5e-69 265.8 692 29.5
EL10Ac7g17514 Beta vulgaris HOM05D000880 ORTHO05D007053 1.2e-68 265.4 692 29.9
Lalb_Chr21g0309241 Lupinus albus HOM05D000880 ORTHO05D007053 1.2e-68 265.4 693 29.6
Os05g0154500 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D007053 1.2e-68 265.4 695 29.4
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.6e-68 265.0 698 30.4
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 3.6e-68 263.8 694 30.4
Ah.15g093160 Amaranthus hybridus HOM05D000880 ORTHO05D007053 4.7e-68 263.5 697 30.0
Lalb_Chr02g0146401 Lupinus albus HOM05D000880 ORTHO05D007053 6.1e-68 263.1 693 30.4
HanXRQChr04g0114151 Helianthus annuus HOM05D000880 ORTHO05D007053 2.3e-67 261.2 696 28.6
Oeu054121.1 Olea europaea HOM05D000880 ORTHO05D007053 2.3e-67 261.2 720 29.3
Peaxi162Scf00001g42030 Petunia axillaris HOM05D000880 ORTHO05D007053 1.5e-66 258.5 695 28.5
ClCG03G013010 Citrullus lanatus HOM05D000880 ORTHO05D007053 2.6e-66 257.7 727 29.3
QL12p028391 Quercus lobata HOM05D000880 ORTHO05D007053 2.6e-66 257.7 698 28.5
Aa31LG10G9270 Aethionema arabicum HOM05D000880 ORTHO05D007053 3.4e-66 257.3 692 28.5
MSTRG.9184 Avicennia marina HOM05D000880 ORTHO05D007053 5.7e-66 256.5 697 29.7
Migut.D00148 Erythranthe guttata HOM05D000880 ORTHO05D007053 1.7e-65 255.0 694 29.4
arahy.Tifrunner.gnm1.ann1.JXQ8LX Arachis hypogaea HOM05D000880 ORTHO05D007053 2.2e-65 254.6 701 29.2
Nitab4.5_0002433g0080 Nicotiana tabacum HOM05D000880 ORTHO05D007053 3.7e-65 253.8 711 29.0
arahy.Tifrunner.gnm1.ann1.VZZJ8Q Arachis hypogaea HOM05D000880 ORTHO05D007053 4.9e-65 253.4 701 29.1
TPR.G33956 Trifolium pratense HOM05D000880 ORTHO05D007053 6.4e-65 253.1 693 28.9
ECA236G1870 Erigeron canadensis HOM05D000880 ORTHO05D007053 8.3e-65 252.7 627 30.3
Lsat_1_v5_gn_9_43261 Lactuca sativa HOM05D000880 ORTHO05D007053 2.4e-64 251.1 697 27.3
Gohir.D08G086000 Gossypium hirsutum HOM05D000880 ORTHO05D007053 5.4e-64 250.0 694 28.8
Dinv33058 Davidia involucrata HOM05D000880 ORTHO05D007053 1.7e-62 245.0 692 29.5
SGA_v2.0_scaffold1G00361 Striga asiatica HOM05D000880 ORTHO05D007053 3.9e-62 243.8 747 28.2
Ca_10329_v3 Cicer arietinum L. HOM05D000880 ORTHO05D007053 5.0e-62 243.4 693 28.1
AUR62025574 Chenopodium quinoa HOM05D000880 ORTHO05D007053 8.6e-62 242.7 742 27.5
SHI15144 Sapria himalayana HOM05D000880 ORTHO05D007053 1.9e-61 241.5 701 30.0
Gorai.004G090500 Gossypium raimondii HOM05D000880 ORTHO05D007053 7.3e-61 239.6 686 28.4
AUR62008670 Chenopodium quinoa HOM05D000880 ORTHO05D007053 1.6e-60 238.4 758 27.2
BraA09t40136Z Brassica rapa HOM05D000880 ORTHO05D007053 2.1e-60 238.0 608 29.1
Nn3g21501 Nelumbo nucifera HOM05D000880 ORTHO05D007053 9.2e-56 222.6 489 31.7
HanXRQChr10g0285001 Helianthus annuus HOM05D000880 ORTHO05D007053 1.2e-55 222.2 674 26.0
Atru.chr5.1139 Acer truncatum HOM05D000880 ORTHO05D007053 4.6e-55 220.3 692 28.0
Cpa.g.sc9.255 Carica papaya HOM05D000880 ORTHO05D007053 8.6e-54 216.1 398 35.4
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.6e-54 216.1 698 27.7
ECA247G4025 Erigeron canadensis HOM05D000880 ORTHO05D007053 3.6e-52 210.7 696 26.6
MD11G1309000 Malus domestica HOM05D000880 ORTHO05D007053 3.6e-52 210.7 506 31.6
MBI14_g32928_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D007053 3.1e-51 207.6 692 26.4
DCAR_018329 Daucus carota HOM05D000880 ORTHO05D007053 1.4e-48 198.7 699 26.3
AUR62018540 Chenopodium quinoa HOM05D000880 ORTHO05D007053 8.6e-46 189.5 553 27.8
Dinv02562 Davidia involucrata HOM05D000880 ORTHO05D007053 1.9e-45 188.3 464 30.2
vmacro02446 Vaccinium macrocarpon HOM05D000880 ORTHO05D007053 1.9e-45 188.3 477 30.2
Gohir.A08G076500 Gossypium hirsutum HOM05D000880 ORTHO05D007053 7.3e-45 186.4 652 26.1
BcaB01g00241 Brassica carinata HOM05D000880 ORTHO05D007053 1.3e-41 175.6 317 34.7
Lsat_1_v5_gn_8_164240 Lactuca sativa HOM05D000880 ORTHO05D007053 8.4e-41 172.9 692 24.4
Nitab4.5_0001879g0170 Nicotiana tabacum HOM05D000880 ORTHO05D007053 6.0e-39 166.8 408 31.6
unitig_32.g10658 Utricularia gibba HOM05D000880 ORTHO05D007053 5.8e-34 150.2 227 38.8
MCO03G526 Micromonas commoda HOM05D000880 ORTHO05D007053 4.6e-31 140.6 334 31.4
Lj2C1196G7 Lonicera japonica HOM05D000880 ORTHO05D007053 1.1e-29 136.0 279 33.0
Cre01.g019150 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D007053 4.3e-29 134.0 412 26.9
CiPaw.08G094700 Carya illinoinensis HOM05D000880 ORTHO05D007053 5.3e-27 127.1 405 26.9
Hma1.2p1_0491F.1_g164650 Hydrangea macrophylla HOM05D000880 ORTHO05D007053 8.7e-22 109.8 69 73.9
SEGI_35866 Sequoiadendron giganteum HOM05D000880 ORTHO05D007053 1.1e-21 109.4 109 54.1
TAR365G0367 Trochodendron aralioides HOM05D000880 ORTHO05D007053 2.1e-20 105.1 68 72.1
Rhsim13G0043200 Rhododendron simsii HOM05D000880 ORTHO05D007053 2.8e-20 104.8 258 31.8
Lj2A1196G44 Lonicera japonica HOM05D000880 ORTHO05D007053 2.9e-17 94.7 69 69.6
PRCOL_00000976 Prasinoderma coloniale HOM05D000880 ORTHO05D007053 1.1e-13 82.8 217 30.4
Lj5g0006803 Lotus japonicus HOM05D000880 ORTHO05D007053 7.6e-10 70.1 148 35.1
TAR365G0888 Trochodendron aralioides HOM05D000880 ORTHO05D007053 6.5e-09 67.0 122 35.2
PGSC0003DMG400031813 Solanum tuberosum HOM05D000880 ORTHO05D007053 2.5e-08 65.1 39 76.9
Oeu040636.1 Olea europaea HOM05D000880 ORTHO05D017463 9.3e-08 63.2 38 73.7
PGR044G0168 Punica granatum HOM05D000880 ORTHO05D007053 1.2e-07 62.8 46 58.7
Actinidia24361 Actinidia chinensis HOM05D000880 ORTHO05D007053 1.3e-06 59.3 56 53.6
Zm00001eb314430 Zea mays HOM05D004581 ORTHO05D006211 1.8e-06 58.9 135 26.7
MCO03G564 Micromonas commoda HOM05D004581 ORTHO05D006211 2.3e-06 58.5 133 30.1
Os09g0446200 Oryza sativa ssp. japonica HOM05D004581 ORTHO05D006211 6.7e-06 57.0 135 25.9
vmacro07891 Vaccinium macrocarpon HOM05D004581 ORTHO05D006211 6.7e-06 57.0 134 26.9
Lsat_1_v5_gn_5_165321 Lactuca sativa HOM05D004581 ORTHO05D006211 8.7e-06 56.6 136 25.7


User provided reference genes

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