Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g8601 Chara braunii HOM05D000880 ORTHO05D007053 1.4e-125 453.0 238 100.0
Mapoly0009s0235 Marchantia polymorpha HOM05D000880 ORTHO05D007053 2.8e-68 262.7 214 65.4
AagrBONN_evm.TU.Sc2ySwM_117.410 Anthoceros agrestis HOM05D000880 ORTHO05D007053 4.9e-65 251.9 220 62.7
Pp3c14_20420 Physcomitrium patens HOM05D000880 ORTHO05D007053 8.3e-65 251.1 200 67.0
SMO364G0941 Selaginella moellendorffii HOM05D000880 ORTHO05D007053 3.5e-63 245.7 206 64.6
ATR0057G121 Amborella trichopoda HOM05D000880 ORTHO05D007053 2.9e-57 226.1 204 59.3
A09p46740 Brassica napus HOM05D000880 ORTHO05D007053 6.4e-57 224.9 220 57.3
BraA09t40136Z Brassica rapa HOM05D000880 ORTHO05D007053 6.4e-57 224.9 220 57.3
THA.LOC104802176 Tarenaya hassleriana HOM05D000880 ORTHO05D007053 8.3e-57 224.6 219 56.2
BcaB01g00245 Brassica carinata HOM05D000880 ORTHO05D007053 1.4e-56 223.8 220 56.8
CARHR163650 Cardamine hirsuta HOM05D000880 ORTHO05D007053 1.9e-56 223.4 219 56.2
Thhalv10010145m.g Eutrema salsugineum HOM05D000880 ORTHO05D007053 2.4e-56 223.0 219 55.7
Sp5g08620 Schrenkiella parvula HOM05D000880 ORTHO05D007053 2.4e-56 223.0 219 55.7
C08p29070 Brassica napus HOM05D000880 ORTHO05D007053 4.1e-56 222.2 220 56.8
BolC8t50508H Brassica oleracea HOM05D000880 ORTHO05D007053 4.1e-56 222.2 220 56.8
BcaC07g39735 Brassica carinata HOM05D000880 ORTHO05D007053 5.4e-56 221.9 218 57.3
DCAR_018329 Daucus carota HOM05D000880 ORTHO05D007053 5.4e-56 221.9 204 58.3
Carub.0005s2034 Capsella rubella HOM05D000880 ORTHO05D007053 7.0e-56 221.5 219 55.7
MBI14_g32928_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D007053 7.0e-56 221.5 218 54.1
AL5G34740 Arabidopsis lyrata HOM05D000880 ORTHO05D007053 1.2e-55 220.7 219 55.7
AT3G53760 Arabidopsis thaliana HOM05D000880 ORTHO05D007053 1.2e-55 220.7 219 55.7
MSTRG.9184 Avicennia marina HOM05D000880 ORTHO05D007053 1.2e-55 220.7 204 59.3
CsaV3_1G043050 Cucumis sativus L. HOM05D000880 ORTHO05D007053 1.6e-55 220.3 205 58.0
Sed0026689 Sechium edule HOM05D000880 ORTHO05D007053 1.6e-55 220.3 201 59.2
HPP92_007056 Vanilla planifolia HOM05D000880 ORTHO05D007053 1.6e-55 220.3 204 56.4
GSVIVG01028027001 Vitis vinifera HOM05D000880 ORTHO05D007053 1.6e-55 220.3 215 55.3
Manes.05G061800 Manihot esculenta HOM05D000880 ORTHO05D007053 2.0e-55 219.9 215 54.0
PGR044G2013 Punica granatum HOM05D000880 ORTHO05D007053 2.0e-55 219.9 219 54.3
Atru.chr5.1139 Acer truncatum HOM05D000880 ORTHO05D007053 2.7e-55 219.5 204 58.3
MELO3C026912.2 Cucumis melo HOM05D000880 ORTHO05D007053 2.7e-55 219.5 205 58.0
Migut.D00148 Erythranthe guttata HOM05D000880 ORTHO05D007053 2.7e-55 219.5 220 54.5
PSO339G1812 Papaver somniferum HOM05D000880 ORTHO05D007053 2.7e-55 219.5 215 54.9
PSO384G2678 Papaver somniferum HOM05D000880 ORTHO05D007053 2.7e-55 219.5 215 54.9
Potri.014G128400 Populus trichocarpa HOM05D000880 ORTHO05D007053 2.7e-55 219.5 215 56.3
Nitab4.5_0001879g0170 Nicotiana tabacum HOM05D000880 ORTHO05D007053 6.0e-55 218.4 204 56.9
VMungo0720G1277 Vigna mungo HOM05D000880 ORTHO05D007053 6.0e-55 218.4 204 58.3
Aa31LG10G9270 Aethionema arabicum HOM05D000880 ORTHO05D007053 7.8e-55 218.0 204 57.8
ClCG03G013010 Citrullus lanatus HOM05D000880 ORTHO05D007053 7.8e-55 218.0 205 58.0
Peaxi162Scf00001g42030 Petunia axillaris HOM05D000880 ORTHO05D007053 7.8e-55 218.0 221 55.2
Hund05431 Selenicereus undatus HOM05D000880 ORTHO05D007053 7.8e-55 218.0 204 57.8
Ah.15g093160 Amaranthus hybridus HOM05D000880 ORTHO05D007053 1.0e-54 217.6 204 57.8
Nitab4.5_0002433g0080 Nicotiana tabacum HOM05D000880 ORTHO05D007053 1.0e-54 217.6 200 58.0
CAN.G472.10 Capsicum annuum HOM05D000880 ORTHO05D007053 1.3e-54 217.2 225 54.2
Haze_04945 Corylus avellana HOM05D000880 ORTHO05D007053 1.3e-54 217.2 219 54.8
Phvul.007G147200 Phaseolus vulgaris HOM05D000880 ORTHO05D007053 1.7e-54 216.9 204 58.3
Sc05g0003770 Simmondsia chinensis HOM05D000880 ORTHO05D007053 1.7e-54 216.9 215 54.9
CSS0009761 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D007053 2.3e-54 216.5 216 53.7
QL12p028391 Quercus lobata HOM05D000880 ORTHO05D007053 2.3e-54 216.5 204 57.8
Solyc09g075190.3 Solanum lycopersicum HOM05D000880 ORTHO05D007053 2.3e-54 216.5 204 57.4
Sopen09g030010 Solanum pennellii HOM05D000880 ORTHO05D007053 2.3e-54 216.5 204 57.4
TWI59G0706 Tripterygium wilfordii HOM05D000880 ORTHO05D007053 2.3e-54 216.5 215 54.4
Actinidia01490 Actinidia chinensis HOM05D000880 ORTHO05D007053 3.0e-54 216.1 204 56.4
Cpa.g.sc9.255 Carica papaya HOM05D000880 ORTHO05D007053 3.0e-54 216.1 204 56.9
Cfa005905 Carpinus fangiana HOM05D000880 ORTHO05D007053 3.0e-54 216.1 219 54.3
vmacro02446 Vaccinium macrocarpon HOM05D000880 ORTHO05D007053 3.0e-54 216.1 204 56.4
Zm00001eb282720 Zea mays HOM05D000880 ORTHO05D007053 3.9e-54 215.7 220 51.8
Dinv02562 Davidia involucrata HOM05D000880 ORTHO05D007053 6.6e-54 214.9 204 57.4
CiPaw.08G094700 Carya illinoinensis HOM05D000880 ORTHO05D007053 8.6e-54 214.5 219 54.3
Cc01_g20910 Coffea canephora HOM05D000880 ORTHO05D007053 8.6e-54 214.5 204 56.9
PGSC0003DMG400031813 Solanum tuberosum HOM05D000880 ORTHO05D007053 8.6e-54 214.5 204 56.9
Lalb_Chr02g0146401 Lupinus albus HOM05D000880 ORTHO05D007053 1.1e-53 214.2 204 58.8
SalBow3G0448 Salvia bowleyana HOM05D000880 ORTHO05D007053 1.1e-53 214.2 220 54.1
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 1.5e-53 213.8 204 57.4
Rhsim13G0009800 Rhododendron simsii HOM05D000880 ORTHO05D007053 1.5e-53 213.8 204 55.9
EL10Ac7g17514 Beta vulgaris HOM05D000880 ORTHO05D007053 2.5e-53 213.0 204 56.4
Lalb_Chr21g0309241 Lupinus albus HOM05D000880 ORTHO05D007053 2.5e-53 213.0 204 57.8
Oeu054121.1 Olea europaea HOM05D000880 ORTHO05D007053 2.5e-53 213.0 204 56.9
arahy.Tifrunner.gnm1.ann1.VZZJ8Q Arachis hypogaea HOM05D000880 ORTHO05D007053 3.3e-53 212.6 204 56.9
ECA236G1870 Erigeron canadensis HOM05D000880 ORTHO05D007053 3.3e-53 212.6 206 56.3
Thecc.01G301400 Theobroma cacao HOM05D000880 ORTHO05D007053 3.3e-53 212.6 204 55.4
COL.COLO4_23337 Corchorus olitorius HOM05D000880 ORTHO05D007053 4.3e-53 212.2 204 55.9
Eucgr.K03489 Eucalyptus grandis HOM05D000880 ORTHO05D007053 4.3e-53 212.2 204 55.9
Ciclev10018978m.g Citrus clementina HOM05D000880 ORTHO05D007053 5.6e-53 211.8 204 55.9
Glyma.10G017800 Glycine max HOM05D000880 ORTHO05D007053 7.3e-53 211.5 208 55.8
Gorai.007G127700 Gossypium raimondii HOM05D000880 ORTHO05D007053 7.3e-53 211.5 204 55.9
Glyma.02G017400 Glycine max HOM05D000880 ORTHO05D007053 9.5e-53 211.1 204 56.9
HanXRQChr04g0114151 Helianthus annuus HOM05D000880 ORTHO05D007053 9.5e-53 211.1 215 54.4
Os05g0154500 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D007053 1.2e-52 210.7 213 54.5
Gohir.A11G114100 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.6e-52 210.3 204 55.9
Hma1.2p1_0491F.1_g164650 Hydrangea macrophylla HOM05D000880 ORTHO05D007053 1.6e-52 210.3 211 53.6
Aqoxy2G02934 Aquilegia oxysepala HOM05D000880 ORTHO05D007053 2.1e-52 209.9 204 56.9
Dinv33058 Davidia involucrata HOM05D000880 ORTHO05D007053 2.1e-52 209.9 200 56.5
arahy.Tifrunner.gnm1.ann1.JXQ8LX Arachis hypogaea HOM05D000880 ORTHO05D007053 2.8e-52 209.5 204 56.4
Medtr1g088410 Medicago truncatula HOM05D000880 ORTHO05D007053 2.8e-52 209.5 204 55.9
Psat6g165160 Pisum sativum HOM05D000880 ORTHO05D007053 2.8e-52 209.5 204 55.4
Ca_10329_v3 Cicer arietinum L. HOM05D000880 ORTHO05D007053 3.6e-52 209.1 204 56.4
Prupe.8G262200 Prunus persica HOM05D000880 ORTHO05D007053 4.7e-52 208.8 205 55.6
unitig_32.g10658 Utricularia gibba HOM05D000880 ORTHO05D007053 4.7e-52 208.8 204 57.4
SGA_v2.0_scaffold1G00361 Striga asiatica HOM05D000880 ORTHO05D007053 6.2e-52 208.4 211 55.9
MD03G1288900 Malus domestica HOM05D000880 ORTHO05D007053 1.1e-51 207.6 204 55.4
TPR.G33956 Trifolium pratense HOM05D000880 ORTHO05D007053 1.4e-51 207.2 204 55.4
BcaB01g00241 Brassica carinata HOM05D000880 ORTHO05D007053 3.1e-51 206.1 206 56.8
Lsat_1_v5_gn_8_164240 Lactuca sativa HOM05D000880 ORTHO05D007053 4.0e-51 205.7 204 54.9
Lj5g0001867 Lotus japonicus HOM05D000880 ORTHO05D007053 8.9e-51 204.5 205 56.1
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 7.5e-50 201.4 234 49.6
RcHm_v2.0_Chr6g0294121 Rosa chinensis HOM05D000880 ORTHO05D007053 7.5e-50 201.4 204 53.9
FvH4_2g25810 Fragaria vesca HOM05D000880 ORTHO05D007053 2.2e-49 199.9 204 53.9
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.2e-49 199.9 204 53.9
Gorai.004G090500 Gossypium raimondii HOM05D000880 ORTHO05D007053 2.9e-49 199.5 214 52.3
Gohir.A08G076500 Gossypium hirsutum HOM05D000880 ORTHO05D007053 2.1e-47 193.4 208 52.9
Lsat_1_v5_gn_9_43261 Lactuca sativa HOM05D000880 ORTHO05D007053 4.3e-45 185.7 208 50.5
HanXRQChr10g0285011 Helianthus annuus HOM05D000880 ORTHO05D007053 4.0e-43 179.1 182 53.8
TAR365G0367 Trochodendron aralioides HOM05D000880 ORTHO05D007053 8.9e-43 177.9 200 51.0
MELO3C015161.2 Cucumis melo HOM05D000880 ORTHO05D007053 5.4e-40 168.7 162 56.8
arahy.Tifrunner.gnm1.ann1.D5VDWJ Arachis hypogaea HOM05D000880 ORTHO05D007053 2.7e-39 166.4 154 58.4
AUR62025574 Chenopodium quinoa HOM05D000880 ORTHO05D007053 1.0e-38 164.5 161 55.3
AUR62008670 Chenopodium quinoa HOM05D000880 ORTHO05D007053 2.3e-38 163.3 177 52.5
ECA247G4025 Erigeron canadensis HOM05D000880 ORTHO05D007053 1.1e-37 161.0 205 46.8
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.9e-37 160.2 204 46.6
MD11G1309000 Malus domestica HOM05D000880 ORTHO05D007053 1.6e-36 157.1 211 46.4
SHI15144 Sapria himalayana HOM05D000880 ORTHO05D007053 4.7e-36 155.6 160 53.8
Lj2A1196G43 Lonicera japonica HOM05D000880 ORTHO05D007053 2.9e-33 146.4 125 60.8
PRCOL_00000976 Prasinoderma coloniale HOM05D000880 ORTHO05D007053 2.4e-32 143.3 224 38.8
Lj5g0006803 Lotus japonicus HOM05D000880 ORTHO05D007053 3.3e-29 132.9 198 43.4
SEGI_07599 Sequoiadendron giganteum HOM05D000880 ORTHO05D007053 4.3e-29 132.5 109 65.1
MCO03G526 Micromonas commoda HOM05D000880 ORTHO05D007053 4.2e-24 115.9 259 35.5
Nn3g21501 Nelumbo nucifera HOM05D000880 ORTHO05D007053 2.7e-23 113.2 108 56.5
PGR044G0168 Punica granatum HOM05D000880 ORTHO05D007053 2.7e-23 113.2 194 38.1
AUR62018540 Chenopodium quinoa HOM05D000880 ORTHO05D007053 1.3e-22 110.9 109 55.0
Gohir.D08G086000 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.1e-21 107.8 109 54.1
Cre01.g019150 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D007053 5.3e-19 99.0 202 36.1
Lj2A1196G44 Lonicera japonica HOM05D000880 ORTHO05D007053 6.2e-12 75.5 80 50.0
Gohir.D11G119200 Gossypium hirsutum HOM05D000880 ORTHO05D007053 8.7e-06 55.1 69 43.5


User provided reference genes

Program Settings