Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 1.4e-294 1015.8 579 100.0
CBR_g45268 Chara braunii HOM05D003481 ORTHO05D004001 1.8e-145 520.4 299 98.0
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 4.8e-58 229.9 292 53.1
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 1.1e-57 228.8 272 55.5
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.1e-57 228.8 291 48.8
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 1.8e-57 228.0 277 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 9.1e-57 225.7 275 57.8
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 1.0e-55 222.2 277 49.1
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 1.0e-55 222.2 293 47.4
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.0e-55 222.2 277 49.1
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 3.8e-55 220.3 292 46.6
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.8e-55 220.3 277 48.7
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 3.8e-55 220.3 279 49.1
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.0e-55 219.9 292 46.6
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 5.0e-55 219.9 290 47.2
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 6.5e-55 219.5 290 47.9
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 6.5e-55 219.5 292 47.3
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 8.5e-55 219.2 292 46.6
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 8.5e-55 219.2 290 47.2
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 8.5e-55 219.2 294 47.6
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.1e-54 218.8 292 46.6
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.1e-54 218.8 292 46.6
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 1.1e-54 218.8 291 46.4
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 1.4e-54 218.4 292 46.6
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.4e-54 218.4 293 46.4
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 1.4e-54 218.4 293 46.4
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 1.4e-54 218.4 293 47.1
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 1.4e-54 218.4 292 47.3
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 1.9e-54 218.0 294 46.9
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.9e-54 218.0 293 46.8
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 2.5e-54 217.6 272 52.9
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 2.5e-54 217.6 292 47.9
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 3.2e-54 217.2 293 46.4
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 3.2e-54 217.2 292 46.6
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 4.2e-54 216.9 281 55.9
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 4.2e-54 216.9 277 46.9
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 4.2e-54 216.9 322 44.1
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 4.2e-54 216.9 293 47.8
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 5.5e-54 216.5 293 46.4
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 5.5e-54 216.5 277 47.3
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 9.4e-54 215.7 277 48.7
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 9.4e-54 215.7 295 46.1
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.2e-53 215.3 289 50.2
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 1.2e-53 215.3 277 46.9
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.2e-53 215.3 294 46.9
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 1.2e-53 215.3 294 48.0
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.2e-53 215.3 295 47.5
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 1.2e-53 215.3 296 45.9
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 1.6e-53 214.9 291 46.7
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 1.6e-53 214.9 293 45.7
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 2.1e-53 214.5 292 46.2
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 2.1e-53 214.5 293 45.4
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 3.6e-53 213.8 321 43.9
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 3.6e-53 213.8 292 46.6
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 3.6e-53 213.8 284 47.9
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 4.7e-53 213.4 279 47.0
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 6.1e-53 213.0 295 46.8
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 6.1e-53 213.0 294 46.3
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 6.1e-53 213.0 294 47.3
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 7.9e-53 212.6 295 45.4
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.0e-52 212.2 296 46.3
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 1.4e-52 211.8 293 46.1
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 1.8e-52 211.5 294 46.9
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 2.3e-52 211.1 297 45.5
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 2.3e-52 211.1 292 45.9
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 2.3e-52 211.1 292 47.3
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 3.0e-52 210.7 282 48.2
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 3.9e-52 210.3 304 44.1
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 6.7e-52 209.5 294 46.3
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 8.8e-52 209.1 276 47.1
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.5e-51 208.4 292 45.5
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 2.0e-51 208.0 298 45.0
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 2.0e-51 208.0 279 47.0
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 2.6e-51 207.6 293 44.4
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 3.3e-51 207.2 279 46.2
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 4.4e-51 206.8 292 45.2
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 5.7e-51 206.5 292 45.5
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 5.7e-51 206.5 292 45.2
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 5.7e-51 206.5 292 45.2
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 5.7e-51 206.5 340 42.9
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 7.4e-51 206.1 290 44.5
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 9.7e-51 205.7 290 45.2
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 9.7e-51 205.7 290 45.2
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 2.2e-50 204.5 287 45.6
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 2.2e-50 204.5 299 46.2
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 2.8e-50 204.1 290 45.2
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 2.8e-50 204.1 292 45.2
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 2.8e-50 204.1 292 45.2
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 2.8e-50 204.1 290 44.5
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 3.7e-50 203.8 294 44.2
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 3.7e-50 203.8 292 44.9
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 4.8e-50 203.4 304 45.1
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 6.3e-50 203.0 290 44.5
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 6.3e-50 203.0 291 44.7
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 8.2e-50 202.6 279 45.5
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 1.1e-49 202.2 302 45.7
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 1.1e-49 202.2 275 46.5
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.8e-49 201.4 292 45.2
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 4.1e-49 200.3 301 44.5
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 5.3e-49 199.9 299 43.5
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 7.0e-49 199.5 346 42.2
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 1.2e-48 198.7 299 43.1
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.0e-48 198.0 292 41.8
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.0e-48 198.0 293 43.7
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 7.7e-48 196.1 292 43.2
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 6.5e-47 193.0 271 45.0
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.5e-46 191.8 271 45.8
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 9.4e-46 189.1 277 45.1
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 9.4e-46 189.1 292 41.8
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.6e-45 188.3 295 41.4
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 2.1e-45 188.0 316 42.4
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 4.7e-45 186.8 292 41.8
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 6.1e-45 186.4 272 44.9
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 2.3e-44 184.5 360 38.6
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.5e-43 181.8 291 41.2
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 1.1e-41 175.6 277 40.8
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.4e-41 175.3 345 38.6
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 4.1e-41 173.7 270 43.7
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 1.5e-38 165.2 249 45.4
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 1.4e-36 158.7 382 35.9
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.5e-30 138.7 87 72.4
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 4.2e-30 137.1 82 79.3
CSS0035493 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.8e-28 131.7 194 44.8
SHI31589 Sapria himalayana HOM05D003481 ORTHO05D004001 1.2e-27 129.0 83 72.3
Nitab4.5_0025882g0010 Nicotiana tabacum HOM05D003481 ORTHO05D004001 9.2e-17 92.8 132 47.7
SHI31588 Sapria himalayana HOM05D003481 ORTHO05D004001 2.5e-14 84.7 52 75.0
Aqoxy3G00998 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 3.3e-14 84.3 59 71.2
Sabra16G0299600 Salix brachista HOM05D003481 ORTHO05D004001 3.3e-14 84.3 129 43.4
Lsat_1_v5_gn_3_92020 Lactuca sativa HOM05D002302 ORTHO05D002728 5.6e-14 83.6 50 76.0
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 2.3e-12 78.2 284 31.3
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 6.8e-12 76.6 89 49.4
Actinidia29308 Actinidia chinensis HOM05D003481 ORTHO05D004001 8.9e-12 76.3 60 61.7
Actinidia33646 Actinidia chinensis HOM05D003481 ORTHO05D004001 2.0e-11 75.1 109 44.0
arahy.Tifrunner.gnm1.ann1.SFPI36 Arachis hypogaea HOM05D003481 ORTHO05D004001 1.7e-10 72.0 49 69.4
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 3.7e-10 70.9 129 39.5
SHI31590 Sapria himalayana HOM05D003481 ORTHO05D004001 3.2e-09 67.8 103 39.8
Nitab4.5_0001298g0060 Nicotiana tabacum HOM05D003481 ORTHO05D004001 4.6e-08 63.9 72 45.8


User provided reference genes

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