Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 0.0e+00 1882.1 951 100.0
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 9.3e-184 648.3 926 41.4
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.8e-182 644.0 903 42.7
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.1e-179 634.8 931 40.4
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 1.8e-166 590.9 929 39.9
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 1.4e-155 554.7 903 37.9
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.4e-152 544.7 905 37.3
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 9.4e-152 542.0 906 37.4
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.6e-149 533.9 910 38.1
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.4e-149 533.1 921 36.8
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.4e-149 533.1 910 38.0
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 7.4e-149 532.3 899 37.4
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.7e-148 531.2 908 37.0
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 2.8e-148 530.4 899 37.0
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 2.8e-148 530.4 909 37.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.3e-148 529.3 904 37.1
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 6.3e-148 529.3 905 36.4
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 1.1e-147 528.5 908 36.5
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.8e-147 527.7 905 37.7
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 2.4e-147 527.3 898 36.5
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 2.4e-147 527.3 916 36.8
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 2.4e-147 527.3 908 36.7
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 3.1e-147 526.9 895 37.2
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 3.1e-147 526.9 906 38.1
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 7.0e-147 525.8 906 38.0
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 1.2e-146 525.0 902 36.8
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.0e-146 524.2 903 38.5
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 3.5e-146 523.5 912 37.0
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.3e-145 521.5 907 35.9
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.7e-145 521.2 907 37.3
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.7e-145 521.2 903 36.0
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.2e-145 520.8 908 37.0
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 2.9e-145 520.4 911 36.2
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 3.8e-145 520.0 909 36.2
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 5.0e-145 519.6 892 36.4
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 5.0e-145 519.6 899 36.6
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 8.5e-145 518.8 908 37.1
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 3.2e-144 516.9 911 37.4
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 7.2e-144 515.8 910 37.6
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 9.4e-144 515.4 948 36.7
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.2e-143 515.0 911 36.8
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-143 515.0 908 36.1
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.1e-143 514.2 917 36.4
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 6.1e-143 512.7 910 36.4
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.4e-142 511.5 902 37.7
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.8e-142 511.1 911 36.9
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.8e-142 511.1 904 36.4
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 2.3e-142 510.8 943 36.5
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 3.0e-142 510.4 910 37.0
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 4.0e-142 510.0 915 36.8
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 4.0e-142 510.0 912 36.6
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 4.0e-142 510.0 915 36.1
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 5.2e-142 509.6 902 36.9
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 5.2e-142 509.6 895 36.2
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 8.8e-142 508.8 916 36.6
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 8.8e-142 508.8 920 35.0
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.5e-141 508.1 915 36.4
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 3.3e-141 506.9 914 37.6
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 3.3e-141 506.9 897 35.3
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 4.4e-141 506.5 914 37.6
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 4.4e-141 506.5 903 35.9
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 7.5e-141 505.8 816 38.5
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 9.7e-141 505.4 913 36.1
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 1.3e-140 505.0 908 36.9
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.8e-140 503.8 914 37.2
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 6.3e-140 502.7 914 35.6
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 8.2e-140 502.3 912 37.3
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 1.1e-139 501.9 913 36.4
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.8e-139 501.1 914 36.1
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 3.1e-139 500.4 899 35.9
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 3.1e-139 500.4 903 36.0
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 2.0e-138 497.7 972 36.2
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.7e-138 497.3 907 35.9
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 3.5e-138 496.9 889 35.9
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 3.5e-138 496.9 901 35.7
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 4.5e-138 496.5 898 35.0
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.0e-137 495.4 914 36.8
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.3e-137 495.0 912 36.0
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 2.2e-137 494.2 914 35.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 6.5e-137 492.7 913 34.6
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.1e-136 491.9 919 34.6
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.5e-136 490.7 891 36.5
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 5.5e-136 489.6 898 35.0
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 9.4e-136 488.8 909 36.1
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.2e-135 488.4 899 34.7
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.6e-135 488.0 915 35.4
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 2.1e-135 487.6 909 36.3
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 2.1e-135 487.6 880 36.5
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.7e-135 487.3 909 36.2
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.6e-135 486.9 929 35.3
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 8.0e-135 485.7 902 35.1
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 8.0e-135 485.7 925 36.0
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.3e-134 484.2 909 35.9
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 5.2e-134 483.0 856 36.6
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 5.2e-134 483.0 914 36.7
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 6.8e-134 482.6 917 34.6
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 6.8e-134 482.6 908 34.8
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 2.0e-133 481.1 896 34.2
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 9.8e-133 478.8 897 34.7
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 2.2e-132 477.6 844 36.5
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.8e-132 477.2 916 34.5
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 4.8e-132 476.5 899 35.3
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 4.8e-132 476.5 916 33.7
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 8.3e-132 475.7 907 34.4
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.4e-131 474.9 907 34.7
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 4.1e-131 473.4 898 34.6
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 4.1e-131 473.4 908 34.8
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 5.4e-131 473.0 888 35.1
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 9.1e-131 472.2 916 33.6
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.2e-130 471.9 891 35.8
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 2.7e-130 470.7 906 33.8
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.5e-130 470.3 917 34.6
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 5.9e-130 469.5 903 33.7
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 7.7e-130 469.2 941 34.0
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.0e-129 468.8 902 33.9
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.0e-129 468.8 934 34.7
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 2.3e-129 467.6 907 33.7
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 3.8e-129 466.8 900 35.8
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.0e-129 466.5 908 35.5
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 6.6e-129 466.1 843 36.4
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 8.6e-129 465.7 912 33.7
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.3e-128 463.8 802 36.8
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 7.2e-128 462.6 906 33.2
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.1e-127 461.1 907 34.8
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 2.8e-127 460.7 803 37.1
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 2.8e-127 460.7 904 34.2
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 6.1e-127 459.5 880 33.4
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.4e-126 458.4 882 34.1
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.4e-126 458.4 783 37.5
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.8e-126 458.0 885 34.0
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.0e-126 457.2 819 35.9
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 6.8e-126 456.1 897 35.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 8.9e-126 455.7 883 34.4
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 3.4e-125 453.8 839 35.2
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.2e-124 451.1 883 34.2
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.2e-124 451.1 905 33.6
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 6.3e-124 449.5 778 37.5
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 3.5e-122 443.7 908 32.8
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 8.6e-121 439.1 652 41.1
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.6e-119 434.9 809 35.5
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 4.7e-119 433.3 886 33.6
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 5.8e-117 426.4 909 33.4
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 7.5e-117 426.0 915 32.0
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 9.2e-115 419.1 904 32.1
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.5e-112 411.8 888 33.6
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 3.6e-111 407.1 904 32.6
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.8e-110 404.8 891 32.7
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.2e-108 397.9 703 36.3
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 3.6e-95 354.0 690 35.8
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 3.9e-89 334.0 964 28.5
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.4e-83 314.7 727 31.9
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.7e-81 308.5 796 30.8
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.6e-79 302.0 421 41.8
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 4.0e-78 297.4 323 50.8
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.9e-72 278.5 334 44.9
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 1.5e-69 268.9 461 38.0
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.4e-67 262.3 986 26.7
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 4.8e-63 247.3 556 32.2
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 8.4e-60 236.5 305 43.0
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.0e-57 229.6 493 33.7
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 6.7e-49 200.3 273 42.1
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 2.1e-42 178.7 400 34.0
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 5.9e-37 160.6 236 37.3
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 1.0e-36 159.8 214 40.7
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 3.6e-34 151.4 159 47.8
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 3.7e-31 141.4 250 34.0
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.1e-30 139.8 404 28.0
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 8.5e-28 130.2 196 39.3
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 1.2e-26 126.3 207 35.7
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 2.1e-26 125.6 147 46.3
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.1e-26 125.6 196 41.3
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.4e-25 122.9 119 53.8
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.1e-22 111.3 184 34.2
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-21 109.8 98 50.0
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 2.7e-18 98.6 103 48.5
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 4.5e-13 81.3 96 42.7
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.5e-11 76.3 98 38.8
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.2e-06 58.5 104 31.7
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.1e-06 58.2 104 31.7


User provided reference genes

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