Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g5621 Chara braunii HOM05D003098 ORTHO05D003634 7.1e-231 804.3 670 100.0
CBR_g77957 Chara braunii HOM05D003098 ORTHO05D003634 2.6e-39 167.9 159 56.0
Zm00001eb204560 Zea mays HOM05D003098 ORTHO05D003634 4.9e-38 163.7 159 54.7
Zm00001eb238650 Zea mays HOM05D003098 ORTHO05D003634 4.9e-38 163.7 159 54.1
AagrBONN_evm.TU.Sc2ySwM_228.3688 Anthoceros agrestis HOM05D003098 ORTHO05D003634 4.1e-37 160.6 159 53.5
Os02g0244100 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 9.2e-37 159.5 159 52.8
BcaB05g25139 Brassica carinata HOM05D003098 ORTHO05D003634 1.6e-36 158.7 159 52.8
A07p43680 Brassica napus HOM05D003098 ORTHO05D003634 6.0e-36 156.8 159 52.2
BraA07t31880Z Brassica rapa HOM05D003098 ORTHO05D003634 6.0e-36 156.8 159 52.2
BcaB03g16017 Brassica carinata HOM05D003098 ORTHO05D003634 1.0e-35 156.0 159 52.2
BcaC08g47416 Brassica carinata HOM05D003098 ORTHO05D003634 1.0e-35 156.0 159 52.2
C06p52360 Brassica napus HOM05D003098 ORTHO05D003634 1.0e-35 156.0 159 52.2
Aa31LG4G2540 Aethionema arabicum HOM05D003098 ORTHO05D003634 1.3e-35 155.6 159 52.8
BolC6t40256H Brassica oleracea HOM05D003098 ORTHO05D003634 1.3e-35 155.6 159 51.6
Sp5g33520 Schrenkiella parvula HOM05D003098 ORTHO05D003634 1.7e-35 155.2 159 52.2
AL2G38790 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 2.3e-35 154.8 159 52.2
Atru.chr2.1895 Acer truncatum HOM05D003098 ORTHO05D003634 3.0e-35 154.5 160 51.9
Thhalv10018644m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 3.9e-35 154.1 159 52.2
AT1G78420 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 6.6e-35 153.3 159 51.6
C02p35590 Brassica napus HOM05D003098 ORTHO05D003634 6.6e-35 153.3 159 50.3
BolC2t09574H Brassica oleracea HOM05D003098 ORTHO05D003634 6.6e-35 153.3 159 50.3
Os06g0154900 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 6.6e-35 153.3 164 48.8
Carub.0002s2532 Capsella rubella HOM05D003098 ORTHO05D003634 1.1e-34 152.5 159 51.6
THA.LOC104808077 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 1.1e-34 152.5 159 51.6
CARHR071940 Cardamine hirsuta HOM05D003098 ORTHO05D003634 1.5e-34 152.1 159 51.6
MBI07_g23222_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 1.5e-34 152.1 159 52.2
BcaC03g15812 Brassica carinata HOM05D003098 ORTHO05D003634 1.9e-34 151.8 159 49.7
Cpa.g.sc77.97 Carica papaya HOM05D003098 ORTHO05D003634 1.9e-34 151.8 160 51.9
Gohir.A13G152100 Gossypium hirsutum HOM05D003098 ORTHO05D003634 1.9e-34 151.8 160 51.2
Gohir.D13G156400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 1.9e-34 151.8 160 51.2
Gorai.013G177000 Gossypium raimondii HOM05D003098 ORTHO05D003634 1.9e-34 151.8 160 51.2
Manes.15G101000 Manihot esculenta HOM05D003098 ORTHO05D003634 1.9e-34 151.8 159 50.3
DCAR_021056 Daucus carota HOM05D003098 ORTHO05D003634 2.5e-34 151.4 159 49.1
Duzib268G0819 Durio zibethinus HOM05D003098 ORTHO05D003634 2.5e-34 151.4 159 50.9
Gohir.A01G041800 Gossypium hirsutum HOM05D003098 ORTHO05D003634 2.5e-34 151.4 159 50.9
Gohir.D01G029400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 3.3e-34 151.0 159 51.6
Gorai.002G038700 Gossypium raimondii HOM05D003098 ORTHO05D003634 3.3e-34 151.0 159 51.6
PGR031G0814 Punica granatum HOM05D003098 ORTHO05D003634 3.3e-34 151.0 159 50.9
A02p22180 Brassica napus HOM05D003098 ORTHO05D003634 4.3e-34 150.6 159 49.7
BraA02t07222Z Brassica rapa HOM05D003098 ORTHO05D003634 4.3e-34 150.6 159 49.7
DCAR_013797 Daucus carota HOM05D003098 ORTHO05D003634 4.3e-34 150.6 159 50.9
Pp3c3_24920 Physcomitrium patens HOM05D003098 ORTHO05D003634 4.3e-34 150.6 159 49.1
THA.LOC104812290 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 4.3e-34 150.6 160 51.2
Zm00001eb376630 Zea mays HOM05D003098 ORTHO05D003634 4.3e-34 150.6 164 48.8
TWI38G0376 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 5.6e-34 150.2 160 51.9
TWI38G1646 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 5.6e-34 150.2 160 51.9
Cc05_g10240 Coffea canephora HOM05D003098 ORTHO05D003634 9.6e-34 149.4 159 50.9
Duzib213G0182 Durio zibethinus HOM05D003098 ORTHO05D003634 9.6e-34 149.4 159 50.9
Eucgr.F03204 Eucalyptus grandis HOM05D003098 ORTHO05D003634 9.6e-34 149.4 159 50.9
Gohir.D05G335700 Gossypium hirsutum HOM05D003098 ORTHO05D003634 9.6e-34 149.4 160 50.6
Gorai.009G359400 Gossypium raimondii HOM05D003098 ORTHO05D003634 9.6e-34 149.4 160 50.6
Nitab4.5_0002495g0020 Nicotiana tabacum HOM05D003098 ORTHO05D003634 9.6e-34 149.4 159 49.1
Sed0018273 Sechium edule HOM05D003098 ORTHO05D003634 9.6e-34 149.4 159 50.9
HPP92_009664 Vanilla planifolia HOM05D003098 ORTHO05D003634 9.6e-34 149.4 159 50.3
CANSAT94G0015 Cannabis sativa HOM05D003098 ORTHO05D003634 1.2e-33 149.1 159 50.3
Ciclev10020251m.g Citrus clementina HOM05D003098 ORTHO05D003634 1.2e-33 149.1 159 49.7
Oeu020368.1 Olea europaea HOM05D003098 ORTHO05D003634 1.6e-33 148.7 159 50.9
Pp3c10_22920 Physcomitrium patens HOM05D003098 ORTHO05D003634 1.6e-33 148.7 159 49.1
Potri.001G378000 Populus trichocarpa HOM05D003098 ORTHO05D003634 1.6e-33 148.7 160 51.9
Sp1g15270 Schrenkiella parvula HOM05D003098 ORTHO05D003634 1.6e-33 148.7 160 50.6
THA.LOC104813978 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 1.6e-33 148.7 159 50.9
PSO541G6535 Papaver somniferum HOM05D003098 ORTHO05D003634 2.1e-33 148.3 159 50.3
Nitab4.5_0005080g0040 Nicotiana tabacum HOM05D003098 ORTHO05D003634 2.8e-33 147.9 159 49.1
Rhsim06G0184800 Rhododendron simsii HOM05D003098 ORTHO05D003634 2.8e-33 147.9 164 50.0
CDE10G1008 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 3.6e-33 147.5 160 50.6
Ca_03391_v3 Cicer arietinum L. HOM05D003098 ORTHO05D003634 3.6e-33 147.5 159 50.9
MELO3C016154.2 Cucumis melo HOM05D003098 ORTHO05D003634 3.6e-33 147.5 159 50.9
Dinv26666 Davidia involucrata HOM05D003098 ORTHO05D003634 3.6e-33 147.5 160 50.6
Aqoxy1G01700 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 4.7e-33 147.1 159 49.1
arahy.Tifrunner.gnm1.ann1.PZE2NF Arachis hypogaea HOM05D003098 ORTHO05D003634 4.7e-33 147.1 163 51.5
CSS0003040 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 4.7e-33 147.1 159 50.3
CAN.G1003.6 Capsicum annuum HOM05D003098 ORTHO05D003634 4.7e-33 147.1 160 50.0
AUR62037970 Chenopodium quinoa HOM05D003098 ORTHO05D003634 4.7e-33 147.1 160 51.2
AUR62041781 Chenopodium quinoa HOM05D003098 ORTHO05D003634 4.7e-33 147.1 160 51.2
Nn3g20785 Nelumbo nucifera HOM05D003098 ORTHO05D003634 4.7e-33 147.1 159 49.7
Sed0021570 Sechium edule HOM05D003098 ORTHO05D003634 4.7e-33 147.1 159 50.3
Actinidia12840 Actinidia chinensis HOM05D003098 ORTHO05D003634 6.2e-33 146.7 159 49.7
Actinidia18845 Actinidia chinensis HOM05D003098 ORTHO05D003634 6.2e-33 146.7 159 50.3
Thhalv10008156m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 6.2e-33 146.7 161 50.9
HanXRQChr10g0305971 Helianthus annuus HOM05D003098 ORTHO05D003634 6.2e-33 146.7 159 49.1
HanXRQChr10g0305981 Helianthus annuus HOM05D003098 ORTHO05D003634 6.2e-33 146.7 159 49.1
Medtr2g070630 Medicago truncatula HOM05D003098 ORTHO05D003634 6.2e-33 146.7 159 50.3
Oeu009883.1 Olea europaea HOM05D003098 ORTHO05D003634 6.2e-33 146.7 159 50.3
SalBow8G0445 Salvia bowleyana HOM05D003098 ORTHO05D003634 6.2e-33 146.7 159 49.7
SEGI_26890 Sequoiadendron giganteum HOM05D003098 ORTHO05D003634 6.2e-33 146.7 160 50.6
vmacro12016 Vaccinium macrocarpon HOM05D003098 ORTHO05D003634 6.2e-33 146.7 159 50.9
BolC5t30262H Brassica oleracea HOM05D003098 ORTHO05D003634 8.1e-33 146.4 161 50.3
CsaV3_4G007810 Cucumis sativus L. HOM05D003098 ORTHO05D003634 8.1e-33 146.4 159 50.3
HanXRQChr11g0330331 Helianthus annuus HOM05D003098 ORTHO05D003634 8.1e-33 146.4 159 49.1
Lj1C810T1 Lonicera japonica HOM05D003098 ORTHO05D003634 8.1e-33 146.4 159 49.7
Lj3g0011437 Lotus japonicus HOM05D003098 ORTHO05D003634 8.1e-33 146.4 159 50.9
Lalb_Chr01g0016081 Lupinus albus HOM05D003098 ORTHO05D003634 8.1e-33 146.4 159 50.9
TPR.G26632 Trifolium pratense HOM05D003098 ORTHO05D003634 8.1e-33 146.4 159 50.3
TAR629G0752 Trochodendron aralioides HOM05D003098 ORTHO05D003634 8.1e-33 146.4 159 50.3
GSVIVG01038087001 Vitis vinifera HOM05D003098 ORTHO05D003634 8.1e-33 146.4 160 48.8
Glyma.13G259100 Glycine max HOM05D003098 ORTHO05D003634 1.1e-32 146.0 159 50.3
Gohir.A04G046600 Gossypium hirsutum HOM05D003098 ORTHO05D003634 1.1e-32 146.0 160 50.0
Actinidia04592 Actinidia chinensis HOM05D003098 ORTHO05D003634 1.4e-32 145.6 159 48.4
AT1G17145 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 1.4e-32 145.6 160 49.4
Dinv13310 Davidia involucrata HOM05D003098 ORTHO05D003634 1.4e-32 145.6 159 49.7
CiPaw.11G068300 Carya illinoinensis HOM05D003098 ORTHO05D003634 1.8e-32 145.2 159 50.9
MD05G1208500 Malus domestica HOM05D003098 ORTHO05D003634 1.8e-32 145.2 159 49.1
PSO675G2036 Papaver somniferum HOM05D003098 ORTHO05D003634 1.8e-32 145.2 159 49.7
Psat1g001120 Pisum sativum HOM05D003098 ORTHO05D003634 1.8e-32 145.2 159 49.7
Solyc07g056630.3 Solanum lycopersicum HOM05D003098 ORTHO05D003634 1.8e-32 145.2 159 48.4
Sopen07g029980 Solanum pennellii HOM05D003098 ORTHO05D003634 1.8e-32 145.2 159 48.4
ATR0730G170 Amborella trichopoda HOM05D003098 ORTHO05D003634 2.4e-32 144.8 161 49.1
CDE10G0611 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 3.1e-32 144.4 160 48.8
ECA236G5036 Erigeron canadensis HOM05D003098 ORTHO05D003634 3.1e-32 144.4 159 48.4
BcaC05g25664 Brassica carinata HOM05D003098 ORTHO05D003634 4.0e-32 144.1 160 50.0
Migut.M00650 Erythranthe guttata HOM05D003098 ORTHO05D003634 4.0e-32 144.1 159 48.4
FAN16G2875 Fragaria x ananassa HOM05D003098 ORTHO05D003634 4.0e-32 144.1 159 48.4
Lsat_1_v5_gn_5_119821 Lactuca sativa HOM05D003098 ORTHO05D003634 4.0e-32 144.1 159 49.7
Lalb_Chr03g0031451 Lupinus albus HOM05D003098 ORTHO05D003634 4.0e-32 144.1 160 48.8
MD10G1195000 Malus domestica HOM05D003098 ORTHO05D003634 4.0e-32 144.1 159 49.7
RcHm_v2.0_Chr5g0027751 Rosa chinensis HOM05D003098 ORTHO05D003634 4.0e-32 144.1 159 48.4
SalBow8G0143 Salvia bowleyana HOM05D003098 ORTHO05D003634 4.0e-32 144.1 178 46.6
Glyma.15G249000 Glycine max HOM05D003098 ORTHO05D003634 5.2e-32 143.7 159 49.7
QL04p070292 Quercus lobata HOM05D003098 ORTHO05D003634 5.2e-32 143.7 159 50.3
TAR626G1321 Trochodendron aralioides HOM05D003098 ORTHO05D003634 5.2e-32 143.7 159 49.7
A06p13040 Brassica napus HOM05D003098 ORTHO05D003634 6.9e-32 143.3 159 48.4
Phvul.005G060550 Phaseolus vulgaris HOM05D003098 ORTHO05D003634 6.9e-32 143.3 159 49.7
MSTRG.15009 Avicennia marina HOM05D003098 ORTHO05D003634 8.9e-32 142.9 157 49.7
FvH4_3g16610 Fragaria vesca HOM05D003098 ORTHO05D003634 1.2e-31 142.5 159 48.4
FAN21G2223 Fragaria x ananassa HOM05D003098 ORTHO05D003634 1.2e-31 142.5 159 48.4
COL.COLO4_17417 Corchorus olitorius HOM05D003098 ORTHO05D003634 1.5e-31 142.1 173 48.0
EL10Ac4g08489 Beta vulgaris HOM05D003098 ORTHO05D003634 2.0e-31 141.7 160 49.4
BraA06t24463Z Brassica rapa HOM05D003098 ORTHO05D003634 2.0e-31 141.7 159 47.8
Hma1.2p1_0325F.1_g125950 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 2.0e-31 141.7 159 47.2
Oeu058426.1 Olea europaea HOM05D003098 ORTHO05D003634 2.0e-31 141.7 159 47.8
Pp3c3_28300 Physcomitrium patens HOM05D003098 ORTHO05D003634 2.0e-31 141.7 159 49.1
SMO364G0643 Selaginella moellendorffii HOM05D003098 ORTHO05D003634 2.0e-31 141.7 159 47.2
Prupe.4G148900 Prunus persica HOM05D003098 ORTHO05D003634 2.6e-31 141.4 159 47.8
Sabra16G0249000 Salix brachista HOM05D003098 ORTHO05D003634 2.6e-31 141.4 165 50.3
MSTRG.6711 Avicennia marina HOM05D003098 ORTHO05D003634 3.4e-31 141.0 159 49.1
Lalb_Chr25g0285391 Lupinus albus HOM05D003098 ORTHO05D003634 3.4e-31 141.0 159 48.4
C05p15520 Brassica napus HOM05D003098 ORTHO05D003634 5.8e-31 140.2 160 48.8
Duzib187G1141 Durio zibethinus HOM05D003098 ORTHO05D003634 5.8e-31 140.2 162 48.8
Nn4g26567 Nelumbo nucifera HOM05D003098 ORTHO05D003634 5.8e-31 140.2 159 47.8
Potri.011G096000 Populus trichocarpa HOM05D003098 ORTHO05D003634 9.9e-31 139.4 160 49.4
AL1G29360 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 1.3e-30 139.0 160 46.9
Hma1.2p1_1456F.1_g284580 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 1.1e-29 136.0 159 47.8
CDE05G1295 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 7.1e-29 133.3 159 45.3
Oeu001299.2 Olea europaea HOM05D003098 ORTHO05D003634 9.3e-29 132.9 159 47.2
PSO782G3246 Papaver somniferum HOM05D003098 ORTHO05D003634 1.6e-28 132.1 157 44.6
PSO063G3789 Papaver somniferum HOM05D003098 ORTHO05D003634 2.1e-28 131.7 157 44.6
SGA_v2.0_scaffold181G39782 Striga asiatica HOM05D003098 ORTHO05D003634 2.7e-28 131.3 159 48.4
CDE02G0504 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 3.5e-28 131.0 159 44.0
Nn2g12562 Nelumbo nucifera HOM05D003098 ORTHO05D003634 3.5e-28 131.0 159 45.9
ATR0580G062 Amborella trichopoda HOM05D003098 ORTHO05D003634 7.8e-28 129.8 160 43.8
TAR627G0095 Trochodendron aralioides HOM05D003098 ORTHO05D003634 1.3e-27 129.0 141 51.1
Aqoxy7G03253 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 1.7e-27 128.6 159 43.4
CSS0004559 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 1.7e-27 128.6 155 47.7
Thecc.07G146500 Theobroma cacao HOM05D003098 ORTHO05D003634 3.0e-27 127.9 160 47.5
Haze_08492 Corylus avellana HOM05D003098 ORTHO05D003634 5.6e-26 123.6 157 45.2
MBI15_g07476_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 1.6e-25 122.1 162 43.8
Nn8g40230 Nelumbo nucifera HOM05D003098 ORTHO05D003634 2.1e-25 121.7 178 40.4
TAR383G0043 Trochodendron aralioides HOM05D003098 ORTHO05D003634 2.1e-25 121.7 159 42.1
Oeu050692.2 Olea europaea HOM05D003098 ORTHO05D003634 1.1e-24 119.4 182 41.8
Cre26.g756897 Chlamydomonas reinhardtii HOM05D003098 ORTHO05D003634 6.4e-22 110.2 155 40.6
MCO16G477 Micromonas commoda HOM05D003098 ORTHO05D003634 6.4e-22 110.2 156 41.0
arahy.Tifrunner.gnm1.ann1.A6UZA5 Arachis hypogaea HOM05D003098 ORTHO05D003634 4.2e-21 107.5 162 41.4
BcaB07g34048 Brassica carinata HOM05D003098 ORTHO05D003634 7.1e-21 106.7 159 41.5
Sabra11G0089500 Salix brachista HOM05D003098 ORTHO05D003634 6.0e-20 103.6 177 39.0
Os06g0652550 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 1.0e-19 102.8 142 38.7
SGA_v2.0_scaffold73G24350 Striga asiatica HOM05D003098 ORTHO05D003634 1.0e-19 102.8 159 41.5
unitig_62.g23089 Utricularia gibba HOM05D003098 ORTHO05D003634 3.9e-19 100.9 173 40.5
MBI10_g30422_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 5.1e-19 100.5 159 41.5
Peaxi162Scf00111g00826 Petunia axillaris HOM05D003098 ORTHO05D003634 5.1e-19 100.5 159 38.4
ClCG07G010480 Citrullus lanatus HOM05D003098 ORTHO05D003634 8.7e-19 99.8 189 38.6
Zm00001eb389010 Zea mays HOM05D003098 ORTHO05D003634 8.7e-19 99.8 136 39.0
CSS0026372 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 2.4e-16 91.7 157 38.9
Zm00001eb388910 Zea mays HOM05D003098 ORTHO05D003634 7.6e-15 86.7 97 44.3
CARHR017700 Cardamine hirsuta HOM05D003098 ORTHO05D003634 8.4e-14 83.2 81 50.6
Hund02321 Selenicereus undatus HOM05D003098 ORTHO05D003634 1.4e-08 65.9 78 47.4
Cfa019454 Carpinus fangiana HOM05D003098 ORTHO05D003634 3.1e-08 64.7 78 46.2
CARHR017710 Cardamine hirsuta HOM05D003098 ORTHO05D003634 4.0e-08 64.3 78 48.7
Lsat_1_v5_gn_7_101201 Lactuca sativa HOM05D003098 ORTHO05D003634 4.0e-08 64.3 77 45.5
SalBow1G2154 Salvia bowleyana HOM05D003098 ORTHO05D003634 1.3e-06 59.3 65 53.8
SalBow1G5329 Salvia bowleyana HOM05D003098 ORTHO05D003634 1.3e-06 59.3 65 53.8
SalBow6G5382 Salvia bowleyana HOM05D003098 ORTHO05D003634 1.3e-06 59.3 65 53.8
Sopen07g030030 Solanum pennellii HOM05D003098 ORTHO05D001334 1.7e-06 58.9 86 40.7
Actinidia35176 Actinidia chinensis HOM05D003098 ORTHO05D003634 2.9e-06 58.2 68 45.6
A07p27540 Brassica napus HOM05D003098 ORTHO05D003634 3.8e-06 57.8 38 68.4
BraA07t30396Z Brassica rapa HOM05D003098 ORTHO05D003634 3.8e-06 57.8 38 68.4
BcaC08g45416 Brassica carinata HOM05D003098 ORTHO05D003634 6.5e-06 57.0 38 68.4
C06p30480 Brassica napus HOM05D003098 ORTHO05D003634 6.5e-06 57.0 38 68.4
BolC6t38210H Brassica oleracea HOM05D003098 ORTHO05D003634 6.5e-06 57.0 38 68.4


User provided reference genes

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