Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 9.9e-284 979.5 534 100.0
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 3.7e-129 466.1 511 50.3
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 1.0e-126 458.0 519 45.7
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 6.5e-126 455.3 486 51.4
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.9e-125 453.8 518 49.2
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 3.2e-125 453.0 518 49.2
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 4.2e-125 452.6 518 53.3
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.2e-124 451.1 516 49.8
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.2e-124 451.1 486 50.8
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.6e-124 450.7 486 51.2
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 2.7e-124 449.9 486 51.0
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 6.1e-124 448.7 518 51.9
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 1.0e-123 448.0 516 49.0
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 3.9e-123 446.0 486 52.7
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 3.9e-123 446.0 518 51.2
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 3.9e-123 446.0 518 53.3
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 5.1e-123 445.7 484 47.1
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 5.1e-123 445.7 486 53.3
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 3.3e-122 443.0 486 51.0
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 5.7e-122 442.2 518 48.5
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 5.7e-122 442.2 518 48.1
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 7.4e-122 441.8 539 47.5
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 9.7e-122 441.4 523 50.7
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 1.3e-121 441.0 486 52.3
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 2.8e-121 439.9 519 48.7
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 2.8e-121 439.9 486 54.7
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 6.3e-121 438.7 518 47.3
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 8.2e-121 438.3 518 47.3
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 8.2e-121 438.3 518 49.6
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 3.1e-120 436.4 486 47.1
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 4.1e-120 436.0 486 54.7
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 4.1e-120 436.0 518 47.5
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 7.0e-120 435.3 518 47.7
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 9.1e-120 434.9 518 47.9
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 1.5e-119 434.1 519 48.4
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.5e-119 434.1 486 52.5
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 2.0e-119 433.7 486 47.3
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 2.0e-119 433.7 518 48.3
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 2.0e-119 433.7 486 53.5
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 3.5e-119 433.0 516 51.4
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 4.5e-119 432.6 486 51.6
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 7.7e-119 431.8 492 53.3
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 7.7e-119 431.8 486 53.1
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 1.3e-118 431.0 486 54.3
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 1.3e-118 431.0 486 48.6
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 1.7e-118 430.6 486 48.6
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 1.7e-118 430.6 486 52.5
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 2.2e-118 430.3 486 53.3
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 2.9e-118 429.9 518 47.5
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 5.0e-118 429.1 488 49.6
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 5.0e-118 429.1 486 53.3
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 5.0e-118 429.1 518 47.5
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 5.0e-118 429.1 486 51.0
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 6.5e-118 428.7 486 50.4
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 6.5e-118 428.7 499 51.5
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 6.5e-118 428.7 518 46.7
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 8.5e-118 428.3 516 47.7
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 8.5e-118 428.3 516 47.7
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 8.5e-118 428.3 486 49.4
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 1.1e-117 427.9 512 46.3
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 1.1e-117 427.9 489 49.7
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 3.2e-117 426.4 484 48.3
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 4.2e-117 426.0 498 48.4
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 7.2e-117 425.2 487 49.1
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 9.4e-117 424.9 488 49.4
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 9.4e-117 424.9 483 53.0
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 9.4e-117 424.9 486 49.0
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 1.2e-116 424.5 487 48.7
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 2.1e-116 423.7 483 50.7
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 2.1e-116 423.7 509 47.2
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 2.1e-116 423.7 518 47.1
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 2.7e-116 423.3 487 48.3
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 3.6e-116 422.9 497 53.1
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 3.6e-116 422.9 486 52.3
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 4.7e-116 422.5 487 48.7
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 4.7e-116 422.5 487 48.7
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 6.1e-116 422.2 487 48.9
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 6.1e-116 422.2 517 47.2
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 6.1e-116 422.2 472 46.6
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 8.0e-116 421.8 486 48.8
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 8.0e-116 421.8 497 53.1
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 8.0e-116 421.8 497 53.1
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 1.8e-115 420.6 486 49.2
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 2.3e-115 420.2 483 48.4
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 6.7e-115 418.7 499 47.7
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 8.8e-115 418.3 487 48.9
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.5e-114 417.5 483 47.0
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 2.6e-114 416.8 484 48.6
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 4.4e-114 416.0 477 48.2
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 5.7e-114 415.6 484 43.8
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 7.4e-114 415.2 487 48.5
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 9.7e-114 414.8 485 48.0
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 1.3e-113 414.5 486 47.7
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 1.3e-113 414.5 491 50.5
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 1.3e-113 414.5 506 44.7
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 2.2e-113 413.7 518 46.3
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 3.7e-113 412.9 477 51.4
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 4.8e-113 412.5 484 46.9
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 6.3e-113 412.1 487 50.3
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.8e-112 410.6 517 45.8
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 3.1e-112 409.8 483 51.8
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 3.1e-112 409.8 484 47.1
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 4.1e-112 409.5 485 47.4
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 5.3e-112 409.1 484 43.6
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 9.1e-112 408.3 516 42.1
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 9.1e-112 408.3 486 46.3
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 2.0e-111 407.1 486 46.7
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 7.7e-111 405.2 484 47.1
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 1.0e-110 404.8 485 47.8
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 2.9e-110 403.3 499 46.1
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 1.5e-109 401.0 486 46.5
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 2.5e-109 400.2 486 47.1
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 3.2e-109 399.8 493 46.9
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 3.2e-109 399.8 484 46.5
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 4.2e-109 399.4 488 47.1
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 4.2e-109 399.4 493 46.9
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 5.5e-109 399.1 488 48.2
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 7.2e-109 398.7 490 47.1
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 7.2e-109 398.7 471 48.2
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 3.6e-108 396.4 488 46.9
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 3.6e-108 396.4 493 46.7
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 3.6e-108 396.4 537 46.4
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 4.7e-108 396.0 493 46.7
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 6.1e-108 395.6 486 47.1
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 2.3e-107 393.7 490 49.0
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 5.2e-107 392.5 488 45.7
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 5.2e-107 392.5 519 44.9
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 6.7e-107 392.1 490 48.0
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.2e-106 391.3 485 46.2
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 2.6e-106 390.2 484 45.9
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 1.3e-105 387.9 488 46.3
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 1.1e-104 384.8 472 47.0
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 5.3e-104 382.5 521 43.4
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 7.0e-104 382.1 489 40.9
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 1.6e-103 380.9 411 53.3
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 3.0e-99 366.7 434 48.6
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 4.0e-99 366.3 434 48.6
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 2.7e-95 353.6 564 38.1
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 6.1e-84 315.8 424 45.3
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 8.0e-84 315.5 487 40.0
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 1.4e-83 314.7 426 44.4
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 6.8e-83 312.4 357 50.4
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 2.0e-79 300.8 490 45.9
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.5e-69 268.1 274 55.5
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 1.5e-69 268.1 532 39.3
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 1.1e-67 261.9 263 56.7
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 6.8e-67 259.2 260 55.0
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 1.2e-55 221.9 264 42.4
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 1.6e-55 221.5 384 36.7
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 5.1e-54 216.5 285 42.5
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 3.2e-48 197.2 167 64.1
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 4.2e-48 196.8 167 63.5
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 1.9e-45 188.0 164 62.8
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 1.9e-45 188.0 164 62.8
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 3.6e-44 183.7 181 58.0
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 1.1e-43 182.2 358 32.7
Cc04_g06580 Coffea canephora HOM05D003955 ORTHO05D004684 2.6e-42 177.6 220 47.7
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 1.9e-29 134.8 100 64.0
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 1.4e-19 102.1 59 66.1
BcaB03g13114 Brassica carinata HOM05D003955 ORTHO05D030800 3.8e-17 94.0 162 35.8
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 5.0e-17 93.6 56 67.9
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 1.1e-08 65.9 72 47.2
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.4e-08 65.5 72 47.2
Lj9A369G66 Lonicera japonica HOM05D003825 ORTHO05D004491 2.1e-07 61.6 281 23.5
Zm00001eb221950 Zea mays HOM05D003955 ORTHO05D004684 6.1e-07 60.1 79 38.0
FvH4_5g16561 Fragaria vesca HOM05D020439 ORTHO05D035355 1.8e-06 58.5 35 68.6
BcaB07g32970 Brassica carinata HOM05D003955 ORTHO05D004684 3.0e-06 57.8 163 26.4


User provided reference genes

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