Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 0.0e+00 1227.6 699 100.0
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.9e-117 427.6 379 57.8
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 4.2e-117 426.4 407 55.5
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.0e-114 417.5 405 53.3
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.8e-104 384.4 390 53.1
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.8e-104 384.4 393 53.4
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.0e-103 380.9 390 50.5
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.6e-100 371.3 389 52.2
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 4.7e-100 369.8 386 53.6
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.0e-99 368.6 424 50.0
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.0e-99 368.6 385 53.5
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 4.0e-99 366.7 380 53.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 5.2e-99 366.3 385 53.2
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 6.8e-99 365.9 380 53.2
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.5e-98 364.8 381 52.8
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 1.5e-98 364.8 376 53.2
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.0e-98 364.4 380 53.2
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.0e-98 364.4 380 53.2
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.0e-98 364.4 380 53.2
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 2.0e-98 364.4 381 52.8
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.6e-98 364.0 380 53.2
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 4.4e-98 363.2 397 51.4
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 4.4e-98 363.2 384 52.6
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 4.4e-98 363.2 384 53.1
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 5.7e-98 362.8 384 52.6
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 9.8e-98 362.1 383 53.0
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 9.8e-98 362.1 381 52.8
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 9.8e-98 362.1 380 52.9
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.3e-97 361.7 384 53.6
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.3e-97 361.7 380 52.9
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.3e-97 361.7 381 52.5
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.7e-97 361.3 376 53.5
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 2.2e-97 360.9 379 53.0
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 2.2e-97 360.9 379 53.0
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 2.2e-97 360.9 388 52.8
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 2.8e-97 360.5 386 52.3
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 3.7e-97 360.1 381 53.0
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 4.9e-97 359.8 384 52.3
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.9e-97 359.8 380 53.2
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 6.3e-97 359.4 376 53.5
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 8.3e-97 359.0 384 52.6
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.1e-96 358.6 381 53.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.4e-96 358.2 382 52.9
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.4e-96 358.2 384 52.6
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.8e-96 357.8 380 51.8
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.8e-96 357.8 379 52.8
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.8e-96 357.8 384 53.4
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.8e-96 357.8 378 52.9
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.1e-96 357.1 373 53.9
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 3.1e-96 357.1 376 52.7
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 3.1e-96 357.1 384 52.9
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 5.4e-96 356.3 384 53.1
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 7.0e-96 355.9 384 52.9
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.2e-95 355.1 381 52.0
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.2e-95 355.1 381 51.2
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.2e-95 355.1 380 51.1
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.6e-95 354.8 379 52.8
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.6e-95 354.8 381 52.5
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.6e-95 354.8 378 52.4
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.6e-95 354.8 376 52.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.0e-95 354.4 384 52.6
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 2.0e-95 354.4 376 53.2
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.0e-95 354.4 378 52.1
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.7e-95 354.0 374 52.4
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.7e-95 354.0 374 52.4
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 2.7e-95 354.0 385 51.7
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 3.5e-95 353.6 381 50.7
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 4.5e-95 353.2 386 51.6
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.5e-95 353.2 374 52.4
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 4.5e-95 353.2 381 51.2
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 5.9e-95 352.8 384 52.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 5.9e-95 352.8 381 51.7
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 7.8e-95 352.4 380 52.4
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.3e-94 351.7 412 48.3
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 1.3e-94 351.7 380 51.6
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.3e-94 351.7 398 50.3
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.3e-94 351.7 370 53.5
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.7e-94 351.3 384 51.0
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.3e-94 350.9 376 52.1
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 2.9e-94 350.5 380 51.6
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 3.9e-94 350.1 381 51.4
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 5.0e-94 349.7 381 51.4
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 6.6e-94 349.4 381 51.2
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 8.6e-94 349.0 376 51.3
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 8.6e-94 349.0 381 52.5
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 2.5e-93 347.4 387 50.1
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.5e-93 347.4 381 52.2
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.5e-93 347.4 381 52.2
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 4.3e-93 346.7 384 52.1
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 5.6e-93 346.3 380 51.1
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 7.3e-93 345.9 380 50.8
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 9.5e-93 345.5 374 50.8
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 9.5e-93 345.5 381 51.7
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 9.5e-93 345.5 381 51.7
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 9.5e-93 345.5 380 49.5
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.2e-92 345.1 384 50.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.6e-92 344.7 381 49.9
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.6e-92 344.7 380 51.1
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.1e-92 344.4 385 48.6
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.1e-92 344.4 373 50.9
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.8e-92 344.0 370 51.9
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.8e-91 341.3 371 50.7
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.3e-91 340.9 381 50.4
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.2e-89 334.3 368 51.9
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 2.9e-89 334.0 383 48.8
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 8.3e-89 332.4 381 49.9
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 4.1e-88 330.1 381 47.8
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.6e-87 328.2 387 47.8
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 4.6e-87 326.6 349 51.3
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 2.3e-86 324.3 381 49.1
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.3e-86 324.3 374 50.0
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 6.6e-86 322.8 378 48.1
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 2.8e-84 317.4 370 49.7
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.4e-82 310.1 376 48.1
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 6.0e-79 299.7 319 53.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.3e-78 298.5 336 50.3
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.3e-73 282.0 315 49.8
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.7e-73 281.6 316 50.3
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.5e-69 268.5 303 49.8
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 7.6e-66 256.1 352 44.0
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.8e-65 253.8 294 49.0
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 4.2e-64 250.4 295 47.5
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 3.9e-62 243.8 303 45.9
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.1e-61 242.3 290 48.3
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 3.2e-56 224.2 297 45.8
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.7e-41 175.3 262 43.9
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 9.0e-35 152.9 123 65.9
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 3.8e-33 147.5 339 34.2
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.3e-28 132.5 118 56.8
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.2e-28 129.8 110 60.9
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.6e-23 114.4 167 39.5
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 7.9e-23 113.2 158 43.7
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-21 109.4 88 60.2
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-21 109.4 109 52.3
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.0e-18 98.6 83 59.0
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.0e-17 96.3 71 64.8
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.8e-17 94.4 127 46.5
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 3.2e-16 91.3 82 59.8
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 8.8e-14 83.2 74 52.7
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.5e-13 82.4 536 23.1
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.1e-11 74.3 82 51.2
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.2e-06 57.4 43 67.4


User provided reference genes

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