Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 0.0e+00 1357.8 665 100.0
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 3.6e-283 978.0 669 71.0
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 9.8e-281 969.9 667 69.3
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 6.3e-280 967.2 669 70.0
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 3.4e-273 944.9 669 69.1
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 4.3e-268 927.9 670 66.4
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 5.8e-265 917.5 668 66.9
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 1.7e-264 916.0 667 66.7
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 2.9e-264 915.2 667 68.5
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 4.9e-264 914.4 665 66.9
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.8e-263 912.5 665 66.2
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 2.4e-263 912.1 668 66.3
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 5.4e-263 911.0 667 67.5
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 7.0e-263 910.6 666 66.1
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 9.2e-263 910.2 667 67.3
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 1.6e-262 909.4 669 67.1
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 1.6e-262 909.4 668 66.6
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 4.6e-262 907.9 667 66.3
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 4.6e-262 907.9 665 67.2
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.3e-261 906.4 666 67.4
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 1.7e-261 906.0 667 67.0
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 5.0e-261 904.4 665 65.6
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 5.0e-261 904.4 667 66.0
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 5.0e-261 904.4 667 67.0
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 1.1e-260 903.3 670 66.0
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 1.5e-260 902.9 666 66.2
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 1.5e-260 902.9 669 66.8
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.9e-260 902.5 666 66.4
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.3e-260 901.7 666 67.1
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 3.3e-260 901.7 669 66.7
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 7.3e-260 900.6 666 67.0
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 1.2e-259 899.8 666 65.5
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 1.6e-259 899.4 666 66.2
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.6e-259 899.4 666 66.8
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 2.8e-259 898.7 669 65.6
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 2.8e-259 898.7 666 66.4
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 4.7e-259 897.9 666 66.5
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 8.0e-259 897.1 667 65.2
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.4e-258 896.3 681 64.9
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 1.8e-258 896.0 667 66.0
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 2.3e-258 895.6 667 66.1
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 3.1e-258 895.2 667 66.1
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 4.0e-258 894.8 667 64.5
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 5.2e-258 894.4 661 66.3
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 5.2e-258 894.4 671 65.7
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 8.9e-258 893.6 667 65.2
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 8.9e-258 893.6 667 66.0
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 1.5e-257 892.9 667 65.5
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 2.6e-257 892.1 668 65.6
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 7.5e-257 890.6 670 65.4
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 1.7e-256 889.4 666 65.6
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 1.7e-256 889.4 666 65.8
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 2.2e-256 889.0 667 65.4
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 2.2e-256 889.0 668 65.9
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.9e-256 888.6 661 66.0
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.1e-255 886.7 667 64.9
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.4e-255 885.6 665 65.6
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.4e-255 885.6 665 65.6
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 5.4e-255 884.4 667 65.2
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 5.4e-255 884.4 679 63.3
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 9.2e-255 883.6 669 65.0
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.2e-254 883.2 667 65.2
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.6e-254 882.9 667 64.2
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.6e-254 882.9 709 61.4
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 1.6e-254 882.9 669 64.6
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 2.1e-254 882.5 667 64.2
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 3.5e-254 881.7 696 64.1
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 6.0e-254 880.9 667 64.9
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 7.8e-254 880.6 669 64.7
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.7e-253 879.4 672 64.0
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 2.3e-253 879.0 667 64.9
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 3.0e-253 878.6 667 64.6
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 3.9e-253 878.2 665 64.1
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 6.6e-253 877.5 667 64.9
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 8.6e-253 877.1 667 63.9
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 8.6e-253 877.1 667 63.9
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 1.9e-252 875.9 667 63.7
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 1.9e-252 875.9 667 65.2
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 9.5e-252 873.6 719 62.6
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 9.5e-252 873.6 669 64.3
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.2e-251 873.2 667 64.0
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.6e-251 872.8 670 64.3
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 8.1e-251 870.5 693 61.8
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 8.1e-251 870.5 669 64.6
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.0e-249 865.9 669 64.4
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 5.8e-249 864.4 668 64.1
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.9e-248 862.1 692 63.3
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 9.2e-247 857.1 667 64.0
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 2.3e-245 852.4 691 61.9
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.1e-244 850.1 667 65.5
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 1.1e-244 850.1 695 62.9
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.8e-243 845.5 670 63.4
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 3.6e-243 845.1 647 65.1
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 6.8e-242 840.9 714 60.2
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 3.8e-240 835.1 620 66.1
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 4.9e-240 834.7 665 62.9
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.7e-238 828.9 669 62.6
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 2.5e-236 822.4 688 60.9
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.3e-236 822.0 695 59.4
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 4.3e-236 821.6 666 61.4
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 5.6e-236 821.2 665 62.6
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 4.7e-235 818.1 666 61.1
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 6.4e-232 807.7 613 66.1
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 1.3e-229 800.0 673 58.7
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 4.3e-228 795.0 613 63.9
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 7.3e-228 794.3 636 63.4
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 4.5e-225 785.0 581 66.1
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 3.2e-223 778.9 581 65.7
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 7.9e-222 774.2 679 58.5
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.3e-219 766.9 562 67.8
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 1.6e-219 766.5 709 56.8
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 2.0e-217 759.6 546 69.2
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 2.1e-214 749.6 693 57.7
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 9.3e-207 724.2 667 55.0
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 5.1e-205 718.4 876 46.9
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 4.1e-202 708.8 625 59.5
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 6.5e-200 701.4 515 67.0
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 1.9e-199 699.9 666 53.8
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.3e-197 693.0 477 70.2
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 2.0e-188 663.3 501 64.9
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 2.6e-188 662.9 677 53.6
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 4.4e-180 635.6 712 47.8
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 5.3e-170 602.1 676 48.4
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 2.6e-164 583.2 673 48.7
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.5e-159 567.4 672 47.0
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.8e-155 553.1 666 47.0
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 7.0e-154 548.5 651 45.9
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.0e-153 547.0 527 53.3
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 4.0e-149 532.7 337 75.1
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.7e-145 520.0 516 54.3
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 8.6e-144 515.0 391 64.2
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 1.0e-136 491.5 337 71.2
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 5.4e-130 469.2 320 69.7
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.4e-122 444.5 376 59.0
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 9.6e-119 431.8 668 41.8
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.8e-118 429.5 276 72.8
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 9.0e-117 425.2 342 64.9
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.5e-105 386.7 664 37.7
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 2.8e-94 350.5 309 61.5
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 6.9e-93 345.9 289 59.5
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.0e-91 342.0 391 49.4
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 6.7e-88 329.3 667 33.3
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 9.7e-79 298.9 659 32.6
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 5.3e-77 293.1 480 39.4
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 5.3e-77 293.1 246 61.0
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 4.5e-76 290.0 511 36.4
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 1.3e-67 261.9 446 36.5
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.1e-61 242.3 231 52.8
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.2e-58 229.6 203 56.7
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 1.4e-56 225.3 321 43.9
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 7.7e-52 209.5 240 48.8
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.6e-47 194.5 286 41.6
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 1.1e-45 189.1 238 49.6
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 3.2e-37 161.0 139 63.3
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.3e-34 149.8 145 58.6
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 5.8e-31 140.2 108 63.9
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 4.3e-26 124.0 228 35.5
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.8e-24 118.6 113 54.0
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 4.0e-24 117.5 127 48.8
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 7.8e-20 103.2 64 73.4
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 4.3e-18 97.4 61 65.6
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 3.6e-17 94.4 59 69.5
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 1.1e-16 92.8 66 63.6
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 2.3e-16 91.7 81 58.0
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 4.0e-16 90.9 150 37.3
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 1.5e-15 89.0 123 41.5
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.7e-14 85.5 50 82.0
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 4.1e-13 80.9 93 46.2
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 7.1e-13 80.1 68 61.8
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 1.5e-10 72.4 50 64.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 7.3e-10 70.1 79 49.4
AagrBONN_evm.TU.Sc2ySwM_228.3515 Anthoceros agrestis HOM05D000639 ORTHO05D004019 6.2e-09 67.0 269 27.9
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 8.1e-09 66.6 48 62.5
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 8.1e-09 66.6 49 71.4
SMO118G0255 Selaginella moellendorffii HOM05D000639 ORTHO05D006731 3.1e-08 64.7 254 26.8
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 5.2e-08 63.9 39 71.8
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 2.0e-07 62.0 48 56.2
CBR_g21834 Chara braunii HOM05D000639 ORTHO05D006731 1.3e-06 59.3 205 31.7
Pp3c15_2560 Physcomitrium patens HOM05D000639 ORTHO05D005966 1.3e-06 59.3 272 25.0
Sc13g0003460 Simmondsia chinensis HOM05D000639 ORTHO05D004019 1.3e-06 59.3 258 24.4
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 2.2e-06 58.5 42 59.5
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 2.2e-06 58.5 50 52.0
DCAR_027075 Daucus carota HOM05D000639 ORTHO05D004019 3.8e-06 57.8 255 25.9
Pp3c1_7870 Physcomitrium patens HOM05D000639 ORTHO05D004019 6.4e-06 57.0 299 24.4
HanXRQChr13g0411281 Helianthus annuus HOM05D000639 ORTHO05D004019 8.4e-06 56.6 272 25.4


User provided reference genes

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