Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 0.0e+00 2147.9 1377 100.0
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 0.0e+00 1604.0 859 93.2
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 1.9e-185 654.4 876 42.4
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 3.7e-181 640.2 843 44.4
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 4.1e-180 636.7 839 43.7
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 2.6e-179 634.0 836 44.1
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 1.1e-177 628.6 846 43.4
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 1.4e-177 628.2 838 43.6
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 3.2e-177 627.1 844 43.6
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 5.5e-177 626.3 847 43.4
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 9.4e-177 625.5 836 42.9
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 4.6e-176 623.2 844 43.5
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 4.6e-176 623.2 845 42.5
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 7.9e-176 622.5 838 43.8
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 3.0e-175 620.5 844 43.0
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 3.0e-175 620.5 845 42.1
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 5.1e-175 619.8 839 43.3
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 6.7e-175 619.4 846 42.3
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 8.8e-175 619.0 844 42.5
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 8.8e-175 619.0 838 43.4
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 8.8e-175 619.0 847 43.2
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 2.0e-174 617.8 839 42.6
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 2.5e-174 617.5 842 42.5
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 2.5e-174 617.5 837 43.4
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 3.3e-174 617.1 839 43.6
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 2.8e-173 614.0 837 43.0
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 2.8e-173 614.0 848 42.3
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 2.8e-173 614.0 839 42.7
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 6.3e-173 612.8 841 42.0
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 6.3e-173 612.8 842 43.5
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 8.2e-173 612.5 838 42.7
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 1.1e-172 612.1 844 41.7
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.4e-172 611.7 838 42.8
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 1.4e-172 611.7 838 43.3
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 1.4e-172 611.7 839 42.7
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 3.1e-172 610.5 838 42.8
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 4.1e-172 610.1 844 42.3
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 5.3e-172 609.8 846 42.9
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 6.9e-172 609.4 843 43.1
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 9.1e-172 609.0 841 42.9
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 9.1e-172 609.0 839 43.3
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.5e-171 608.2 838 42.7
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 2.0e-171 607.8 844 42.1
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 2.0e-171 607.8 846 42.3
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 2.0e-171 607.8 838 42.5
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.6e-171 607.4 843 42.5
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 3.4e-171 607.1 838 43.4
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 7.7e-171 605.9 850 41.1
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 1.0e-170 605.5 842 42.3
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 1.0e-170 605.5 840 42.6
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.0e-170 605.5 841 42.8
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.7e-170 604.7 848 41.7
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 5.0e-170 603.2 846 41.4
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 5.0e-170 603.2 846 42.7
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 5.0e-170 603.2 837 42.4
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 8.5e-170 602.4 858 42.5
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 1.1e-169 602.1 838 41.5
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 1.1e-169 602.1 847 42.4
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 1.1e-169 602.1 836 41.6
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.1e-169 602.1 846 43.1
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 2.5e-169 600.9 844 41.9
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 2.5e-169 600.9 845 41.9
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 4.2e-169 600.1 838 41.5
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 7.2e-169 599.4 838 41.8
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 9.4e-169 599.0 855 42.2
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 9.4e-169 599.0 838 42.1
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.2e-168 598.6 838 41.4
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 6.1e-168 596.3 841 42.6
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 7.9e-168 595.9 839 41.8
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 1.0e-167 595.5 846 43.1
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 1.4e-167 595.1 838 41.4
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 2.3e-167 594.3 843 42.0
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 3.0e-167 594.0 687 48.2
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 3.9e-167 593.6 838 41.2
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 3.9e-167 593.6 862 40.5
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 5.1e-167 593.2 843 41.9
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.0e-166 591.3 854 41.6
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.6e-166 590.9 838 41.6
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.3e-165 588.6 731 46.4
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 1.3e-165 588.6 864 41.1
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 2.8e-165 587.4 838 42.0
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 4.8e-165 586.6 843 41.0
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 8.2e-165 585.9 846 40.4
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 1.8e-164 584.7 827 42.2
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 5.3e-164 583.2 847 41.8
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 4.5e-163 580.1 838 40.7
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 2.9e-162 577.4 858 40.1
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 1.1e-161 575.5 843 41.0
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 9.4e-161 572.4 844 41.5
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 6.1e-160 569.7 817 42.0
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 2.3e-159 567.8 843 39.5
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 8.8e-159 565.8 807 41.4
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 1.5e-158 565.1 681 47.3
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 9.1e-156 555.8 776 42.5
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 5.5e-153 546.6 842 38.5
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 1.5e-150 538.5 841 39.0
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 2.5e-145 521.2 845 39.6
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.4e-143 515.4 845 38.1
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.5e-142 511.9 697 43.6
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 2.8e-136 491.1 731 40.1
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 2.6e-134 484.6 519 51.1
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 2.6e-134 484.6 514 50.8
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 1.7e-130 471.9 882 36.7
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 2.5e-129 468.0 907 36.2
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 6.1e-128 463.4 626 43.6
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 6.8e-127 459.9 837 36.4
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 3.2e-124 451.1 830 36.0
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 1.4e-119 435.6 843 34.9
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.5e-110 405.6 499 45.5
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 1.5e-105 389.0 682 36.4
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 3.4e-102 377.9 852 32.9
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 7.8e-99 366.7 843 31.6
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.7e-90 339.0 332 54.2
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 5.1e-74 284.3 356 45.5
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 1.9e-73 282.3 525 35.0
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 2.5e-65 255.4 328 47.0
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 2.2e-48 199.1 234 47.9
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 5.5e-44 184.5 157 60.5
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 3.6e-35 155.2 121 62.0
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.2e-32 146.0 268 35.1
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 7.0e-31 141.0 102 66.7
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 4.0e-26 125.2 138 47.8
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 2.6e-25 122.5 110 60.0
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 5.4e-15 88.2 85 56.5
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 3.9e-13 82.0 61 57.4
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 3.9e-13 82.0 85 47.1
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 5.6e-12 78.2 57 63.2
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 2.1e-11 76.3 132 36.4
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 2.9e-08 65.9 54 51.9
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 1.1e-07 63.9 68 41.2
RcHm_v2.0_Chr4g0417521 Rosa chinensis HOM05D004849 ORTHO05D005955 7.0e-07 61.2 83 41.0
AagrBONN_evm.TU.Sc2ySwM_368.1673 Anthoceros agrestis HOM05D004849 ORTHO05D005955 1.2e-06 60.5 83 37.3
Cre12.g491500 Chlamydomonas reinhardtii HOM05D004849 ORTHO05D005955 1.2e-06 60.5 73 42.5
MD13G1185500 Malus domestica HOM05D004849 ORTHO05D005955 1.2e-06 60.5 115 36.5
AL6G30630 Arabidopsis lyrata HOM05D004849 ORTHO05D005955 2.0e-06 59.7 83 38.6
CANSAT78G0899 Cannabis sativa HOM05D004849 ORTHO05D005955 2.0e-06 59.7 83 38.6
FvH4_4g14790 Fragaria vesca HOM05D004849 ORTHO05D005955 2.0e-06 59.7 83 38.6
FAN07G1248 Fragaria x ananassa HOM05D004849 ORTHO05D005955 2.0e-06 59.7 120 35.0
FAN12G0879 Fragaria x ananassa HOM05D004849 ORTHO05D005955 2.0e-06 59.7 83 38.6
FAN17G1787 Fragaria x ananassa HOM05D004849 ORTHO05D005955 2.0e-06 59.7 83 38.6
FAN22G1365 Fragaria x ananassa HOM05D004849 ORTHO05D005955 2.0e-06 59.7 83 38.6
Prupe.1G153200 Prunus persica HOM05D004849 ORTHO05D005955 2.0e-06 59.7 83 39.8
unitig_748.g8344 Utricularia gibba HOM05D004849 ORTHO05D005955 2.0e-06 59.7 85 38.8
AT5G19180 Arabidopsis thaliana HOM05D004849 ORTHO05D005955 2.7e-06 59.3 83 37.3
AUR62038065 Chenopodium quinoa HOM05D004849 ORTHO05D005955 2.7e-06 59.3 77 40.3
FvH4_1g25030 Fragaria vesca HOM05D004849 ORTHO05D005955 2.7e-06 59.3 72 43.1
FAN19G3009 Fragaria x ananassa HOM05D004849 ORTHO05D005955 2.7e-06 59.3 72 43.1
FAN26G1719 Fragaria x ananassa HOM05D004849 ORTHO05D005955 2.7e-06 59.3 72 43.1
Carub.0006s1751 Capsella rubella HOM05D004849 ORTHO05D005955 4.6e-06 58.5 112 35.7
CBR_g30851 Chara braunii HOM05D004849 ORTHO05D005955 4.6e-06 58.5 73 39.7
Dinv44492 Davidia involucrata HOM05D004849 ORTHO05D005955 4.6e-06 58.5 72 43.1
Hma1.2p1_0511F.1_g169010 Hydrangea macrophylla HOM05D004849 ORTHO05D005955 4.6e-06 58.5 72 43.1
Lsat_1_v5_gn_9_81160 Lactuca sativa HOM05D004849 ORTHO05D005955 4.6e-06 58.5 72 43.1
Peaxi162Scf00134g02031 Petunia axillaris HOM05D004849 ORTHO05D005955 6.0e-06 58.2 76 40.8
CSS0004513 Camellia sinensis var. sinensis HOM05D004849 ORTHO05D005955 7.8e-06 57.8 83 37.3
Cpa.g.sc147.13 Carica papaya HOM05D004849 ORTHO05D005955 7.8e-06 57.8 72 43.1
Eucgr.H03572 Eucalyptus grandis HOM05D004849 ORTHO05D005955 7.8e-06 57.8 83 37.3
Pp3c21_10350 Physcomitrium patens HOM05D004849 ORTHO05D005955 7.8e-06 57.8 83 38.6
PGR142G0613 Punica granatum HOM05D004849 ORTHO05D005955 7.8e-06 57.8 83 37.3
Sp6g25195 Schrenkiella parvula HOM05D004849 ORTHO05D005955 7.8e-06 57.8 72 41.7
Hund12176 Selenicereus undatus HOM05D004849 ORTHO05D005955 7.8e-06 57.8 83 37.3
TPR.G37111 Trifolium pratense HOM05D004849 ORTHO05D005955 7.8e-06 57.8 72 41.7


User provided reference genes

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