Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 0.0e+00 2199.1 1386 100.0
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 1.3e-287 993.8 1434 44.6
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 1.2e-283 980.7 1438 44.9
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 9.2e-273 944.5 1441 43.3
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 5.2e-260 902.1 1394 42.0
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 1.2e-259 901.0 1399 42.0
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 7.5e-259 898.3 1413 42.0
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 4.9e-258 895.6 1395 42.6
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 6.4e-258 895.2 1389 42.8
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 2.4e-257 893.3 1400 41.6
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 4.1e-257 892.5 1404 42.0
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 7.0e-257 891.7 1395 42.4
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 2.7e-256 889.8 1435 41.0
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 3.5e-256 889.4 1383 42.6
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 1.3e-255 887.5 1397 41.6
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 1.7e-255 887.1 1387 42.1
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 1.7e-255 887.1 1402 41.9
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 1.7e-255 887.1 1387 43.8
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 5.0e-255 885.6 1384 41.8
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 6.6e-255 885.2 1403 41.3
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 8.6e-255 884.8 1397 42.9
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 4.3e-254 882.5 1399 42.0
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.2e-253 880.9 1435 40.8
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 4.7e-253 879.0 1392 41.6
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 3.1e-252 876.3 1377 41.5
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 8.9e-252 874.8 1400 41.3
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 1.5e-251 874.0 1391 40.5
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 4.4e-251 872.5 1409 40.5
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 5.8e-251 872.1 1389 41.5
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 9.9e-251 871.3 1393 40.8
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 1.3e-250 870.9 1446 41.0
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 2.9e-250 869.8 1404 41.5
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 3.7e-250 869.4 1387 41.5
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 4.1e-249 865.9 1389 40.6
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 5.4e-249 865.5 1392 42.2
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 7.1e-249 865.1 1394 42.4
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 7.1e-249 865.1 1413 40.1
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 9.2e-249 864.8 1386 41.2
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 1.2e-248 864.4 1392 40.9
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 1.2e-248 864.4 1390 41.4
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 1.6e-248 864.0 1389 40.9
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 2.1e-248 863.6 1392 40.8
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 2.7e-248 863.2 1384 41.5
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.5e-248 862.8 1383 41.4
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 3.5e-248 862.8 1406 41.2
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 3.5e-248 862.8 1406 41.2
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 3.5e-248 862.8 1391 41.3
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 6.0e-248 862.1 1389 41.3
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 7.8e-248 861.7 1384 41.0
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 1.0e-247 861.3 1389 41.0
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 3.0e-247 859.8 1394 40.6
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 3.9e-247 859.4 1390 40.6
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 3.9e-247 859.4 1384 41.5
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 5.1e-247 859.0 1415 40.3
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 5.1e-247 859.0 1409 41.0
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 8.6e-247 858.2 1390 42.7
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 1.1e-246 857.8 1382 41.3
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 5.6e-246 855.5 1390 42.3
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 5.6e-246 855.5 1390 42.7
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 5.6e-246 855.5 1390 42.3
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 9.5e-246 854.7 1406 40.0
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 9.5e-246 854.7 1393 39.9
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 1.2e-245 854.4 1388 42.1
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 1.2e-245 854.4 1414 42.6
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 1.6e-245 854.0 1390 42.7
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 2.8e-245 853.2 1401 39.9
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 4.7e-245 852.4 1406 40.0
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.8e-244 850.5 1385 40.6
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 2.4e-244 850.1 1393 39.8
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 3.1e-244 849.7 1387 41.0
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 3.1e-244 849.7 1398 41.1
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 4.0e-244 849.4 1388 40.4
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 5.2e-244 849.0 1406 41.9
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 5.2e-244 849.0 1394 41.6
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 6.8e-244 848.6 1386 40.7
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 1.2e-243 847.8 1403 42.1
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 4.4e-243 845.9 1401 40.0
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 7.6e-243 845.1 1380 40.6
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 2.9e-242 843.2 1385 40.2
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 2.9e-242 843.2 1385 41.3
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 6.4e-242 842.0 1388 40.7
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 1.4e-241 840.9 1401 40.0
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 3.2e-241 839.7 1389 41.9
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 3.2e-241 839.7 1413 42.0
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 4.1e-241 839.3 1410 40.0
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 7.3e-238 828.6 1391 40.9
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 1.6e-237 827.4 1396 40.2
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 3.6e-237 826.2 1346 40.7
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 6.9e-236 822.0 1405 41.1
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 1.4e-233 814.3 1382 39.1
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 7.6e-227 792.0 1408 39.1
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 2.0e-211 740.7 873 49.1
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 3.8e-210 736.5 871 49.1
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.3e-207 728.0 898 48.0
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 2.6e-182 644.0 1257 36.5
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.4e-167 595.1 1160 37.4
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.8e-167 592.4 914 41.6
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 5.7e-166 589.7 1409 34.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 5.2e-151 540.0 755 44.5
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 4.9e-149 533.5 753 43.6
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 2.5e-137 494.6 784 40.6
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.2e-134 485.7 706 42.5
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 4.4e-134 483.8 708 42.4
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 4.1e-132 477.2 701 42.5
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.7e-114 418.7 586 45.6
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 2.0e-110 405.2 690 39.0
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 4.3e-105 387.5 671 39.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 5.6e-97 360.5 931 30.5
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.1e-89 336.3 640 37.3
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.6e-83 315.8 552 37.3
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 7.9e-83 313.5 912 30.4
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 3.1e-79 301.6 377 46.2
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 1.0e-77 296.6 781 42.6
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.7e-77 295.8 624 35.6
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.8e-72 278.5 573 36.0
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.1e-65 256.5 513 35.3
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.6e-65 255.4 580 33.8
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.3e-63 247.7 241 56.8
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 9.1e-63 246.9 629 31.8
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.6e-59 235.0 147 78.9
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.3e-58 232.3 243 53.5
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.3e-56 226.5 416 36.3
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 2.7e-54 218.8 287 45.6
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 1.6e-51 209.5 149 71.8
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 2.3e-50 205.7 571 31.9
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 6.6e-45 187.6 288 38.2
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 8.6e-45 187.2 137 66.4
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-39 169.9 113 73.5
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 2.4e-39 169.1 247 40.9
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.6e-38 166.4 106 79.2
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.6e-38 166.4 276 39.9
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 2.9e-37 162.2 113 70.8
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 5.0e-37 161.4 111 71.2
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.1e-36 160.2 123 67.5
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 2.5e-36 159.1 124 65.3
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-35 156.8 113 68.1
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 6.1e-35 154.5 203 44.8
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.0e-34 153.7 209 46.4
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.0e-34 153.7 209 45.9
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 3.1e-34 152.1 191 43.5
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 3.1e-34 152.1 209 45.5
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 5.8e-33 147.9 120 64.2
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 3.2e-31 142.1 106 71.7
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.3e-29 136.0 159 44.7
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 8.6e-29 134.0 89 74.2
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.9e-28 132.9 99 69.7
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.6e-28 131.3 416 30.5
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 2.3e-26 125.9 95 64.2
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 7.1e-23 114.4 81 70.4
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 8.9e-18 97.4 239 31.0
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 1.7e-16 93.2 75 62.7
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 3.7e-16 92.0 192 32.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 4.9e-16 91.7 75 61.3
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 1.4e-15 90.1 73 54.8
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 1.2e-14 87.0 91 52.7
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.6e-11 76.6 78 51.3
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 1.1e-10 73.9 70 52.9


User provided reference genes

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