Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 5.7e-190 667.5 368 100.0
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 8.5e-109 397.9 353 59.8
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 7.9e-107 391.3 348 58.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.8e-106 390.2 394 51.8
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 3.0e-106 389.4 339 57.2
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 5.1e-106 388.7 356 54.8
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 8.8e-106 387.9 339 56.3
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 8.8e-106 387.9 349 56.4
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 8.8e-106 387.9 345 56.5
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.6e-105 386.3 350 56.0
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 2.6e-105 386.3 341 56.9
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.6e-105 386.3 343 58.3
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.3e-105 386.0 339 56.0
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 4.4e-105 385.6 338 57.1
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.4e-105 385.6 339 56.0
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 5.7e-105 385.2 340 56.8
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 5.7e-105 385.2 340 57.1
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.7e-105 385.2 398 52.0
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 5.7e-105 385.2 339 57.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 9.7e-105 384.4 349 56.4
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 9.7e-105 384.4 398 52.0
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 9.7e-105 384.4 342 56.1
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.3e-104 384.0 340 56.5
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.3e-104 384.0 405 50.4
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.3e-104 384.0 398 52.0
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.3e-104 384.0 339 56.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.7e-104 383.6 339 55.8
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.8e-104 382.9 394 52.5
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 2.8e-104 382.9 395 51.6
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 3.7e-104 382.5 354 55.1
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 4.8e-104 382.1 350 54.9
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 8.2e-104 381.3 339 56.6
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-103 380.9 399 51.6
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 1.4e-103 380.6 345 55.9
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.4e-103 380.6 399 51.6
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.4e-103 380.6 342 56.4
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 1.4e-103 380.6 352 55.1
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 4.1e-103 379.0 343 58.0
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 4.1e-103 379.0 354 54.8
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 4.1e-103 379.0 394 51.5
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 5.3e-103 378.6 341 56.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 5.3e-103 378.6 340 56.2
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 5.3e-103 378.6 406 51.0
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 5.3e-103 378.6 341 57.5
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 5.3e-103 378.6 341 57.5
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 7.0e-103 378.3 341 57.2
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 7.0e-103 378.3 346 56.1
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 7.0e-103 378.3 408 51.0
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 9.1e-103 377.9 389 51.4
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 9.1e-103 377.9 401 52.1
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 9.1e-103 377.9 340 56.2
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.1e-103 377.9 334 55.4
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 9.1e-103 377.9 342 55.8
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.2e-102 377.5 394 52.5
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 1.5e-102 377.1 339 54.9
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.5e-102 377.1 379 52.5
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.0e-102 376.7 396 50.5
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 2.0e-102 376.7 342 55.6
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 2.0e-102 376.7 342 55.8
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.6e-102 376.3 339 55.2
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.4e-102 375.9 344 55.5
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 4.5e-102 375.6 345 55.1
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 4.5e-102 375.6 410 51.7
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 5.9e-102 375.2 339 55.2
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 5.9e-102 375.2 407 50.1
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 7.7e-102 374.8 339 55.5
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 7.7e-102 374.8 392 51.3
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.0e-101 374.4 393 49.9
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.0e-101 374.4 343 55.7
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.0e-101 374.4 342 57.0
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 1.0e-101 374.4 340 55.9
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.3e-101 374.0 398 50.0
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.7e-101 373.6 344 54.4
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.7e-101 373.6 345 55.4
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.9e-101 372.9 340 54.7
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.9e-101 372.9 339 54.6
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 3.8e-101 372.5 338 56.2
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 3.8e-101 372.5 339 55.5
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 5.0e-101 372.1 339 54.6
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 5.0e-101 372.1 339 54.6
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 6.5e-101 371.7 339 54.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 8.5e-101 371.3 339 54.3
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.1e-100 370.9 339 54.9
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.9e-100 370.2 347 54.8
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 3.2e-100 369.4 341 54.5
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.2e-100 369.0 339 54.3
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 4.2e-100 369.0 339 54.3
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 7.2e-100 368.2 405 49.6
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.2e-99 367.5 350 53.7
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 1.2e-99 367.5 379 50.7
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.6e-99 367.1 367 52.0
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 3.6e-99 365.9 344 53.5
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.0e-98 364.4 340 53.8
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.0e-98 364.4 340 53.8
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.0e-98 364.4 340 53.8
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 1.8e-98 363.6 340 54.1
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 5.2e-98 362.1 322 56.2
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 6.7e-98 361.7 340 54.1
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 8.8e-98 361.3 340 53.8
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 8.8e-98 361.3 343 54.8
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.5e-97 360.5 362 53.3
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 2.0e-97 360.1 340 53.8
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 2.6e-97 359.8 349 54.2
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 7.4e-97 358.2 400 48.0
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.7e-97 357.8 301 57.5
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.7e-96 357.1 308 57.1
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.1e-95 354.4 344 53.5
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.4e-95 353.2 316 56.0
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 3.5e-94 349.4 307 57.3
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 5.0e-93 345.5 303 55.4
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.2e-92 342.8 318 56.0
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.2e-92 342.8 303 56.8
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.2e-91 340.9 316 55.1
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.6e-91 340.5 380 50.3
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 4.0e-90 335.9 312 55.4
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.2e-89 334.3 349 51.6
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.7e-88 329.3 353 50.7
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 9.1e-87 324.7 317 53.0
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 9.1e-87 324.7 332 52.1
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 9.1e-87 324.7 347 51.3
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 2.2e-85 320.1 342 48.5
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 6.5e-85 318.5 339 49.0
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 1.8e-82 310.5 228 66.7
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.6e-81 306.6 221 65.2
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.3e-80 304.3 212 65.1
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 2.4e-79 300.1 553 36.7
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.4e-79 298.9 212 66.5
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 4.5e-78 295.8 225 64.0
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 4.2e-76 289.3 293 56.0
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 4.2e-76 289.3 220 66.4
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.1e-75 285.4 203 64.0
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.6e-70 270.8 191 66.0
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 9.5e-68 261.5 243 52.7
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.1e-67 260.4 335 43.6
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.3e-61 240.4 185 61.6
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 3.0e-53 213.4 288 42.4
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.8e-43 180.3 211 44.1
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 8.1e-43 178.7 179 52.5
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 3.5e-38 163.3 112 69.6
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 4.6e-38 162.9 307 34.9
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 9.0e-34 148.7 319 31.0
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.2e-33 148.3 155 51.0
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 5.8e-33 146.0 343 30.6
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.6e-30 137.9 183 42.6
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 6.6e-29 132.5 314 31.5
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 6.6e-29 132.5 304 33.6
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 7.3e-28 129.0 180 41.1
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 8.4e-24 115.5 247 30.4
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 4.6e-22 109.8 56 83.9
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 4.3e-20 103.2 92 55.4
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 7.1e-15 85.9 62 72.6
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 3.3e-12 77.0 46 65.2
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 4.3e-12 76.6 55 65.5
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.8e-11 73.9 83 53.0
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 2.9e-08 63.9 32 75.0
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 2.9e-08 63.9 66 45.5
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 4.2e-07 60.1 32 68.8
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 3.5e-06 57.0 175 32.0


User provided reference genes

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