Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4468 Chara braunii HOM05D002459 ORTHO05D016512 5.1e-236 820.8 462 100.0
CBR_g28057 Chara braunii HOM05D002459 ORTHO05D016512 1.8e-76 290.8 276 59.4
CBR_g51477 Chara braunii HOM05D002459 ORTHO05D016512 3.2e-44 183.7 478 28.2
CDE05G2383 Ceratophyllum demersum HOM05D002310 ORTHO05D002326 6.4e-13 79.7 140 29.3
vmacro19786 Vaccinium macrocarpon HOM05D002459 ORTHO05D003006 6.0e-11 73.2 171 29.2
MBI06_g32146_MAGBIO Magnolia biondii HOM05D002459 ORTHO05D003006 1.7e-10 71.6 169 31.4
GSVIVG01017976001 Vitis vinifera HOM05D002310 ORTHO05D002326 5.1e-10 70.1 140 28.6
AUR62000616 Chenopodium quinoa HOM05D002459 ORTHO05D003006 6.6e-10 69.7 141 29.1
Peaxi162Scf00579g00049 Petunia axillaris HOM05D002459 ORTHO05D003006 6.6e-10 69.7 164 29.9
ATR0739G048 Amborella trichopoda HOM05D002459 ORTHO05D003006 8.7e-10 69.3 181 31.5
COL.COLO4_33528 Corchorus olitorius HOM05D002459 ORTHO05D003006 8.7e-10 69.3 165 30.3
Sabra19G0012600 Salix brachista HOM05D002459 ORTHO05D003006 8.7e-10 69.3 186 28.0
CAN.G243.34 Capsicum annuum HOM05D002459 ORTHO05D003006 1.1e-09 68.9 129 31.8
Glyma.20G146000 Glycine max HOM05D002310 ORTHO05D002326 1.5e-09 68.6 153 28.8
VMungo0720G0449 Vigna mungo HOM05D002310 ORTHO05D002326 1.5e-09 68.6 142 29.6
HPP92_004640 Vanilla planifolia HOM05D002459 ORTHO05D003006 1.9e-09 68.2 249 24.9
Potri.008G152900 Populus trichocarpa HOM05D002310 ORTHO05D002326 2.5e-09 67.8 139 28.8
Medtr2g007690 Medicago truncatula HOM05D002459 ORTHO05D003006 3.3e-09 67.4 183 28.4
Phvul.007G057400 Phaseolus vulgaris HOM05D002310 ORTHO05D002326 3.3e-09 67.4 142 30.3
Gohir.A05G008900 Gossypium hirsutum HOM05D002459 ORTHO05D003006 4.3e-09 67.0 162 29.6
Potri.018G137400 Populus trichocarpa HOM05D002459 ORTHO05D003006 5.6e-09 66.6 280 25.4
Potri.T045700 Populus trichocarpa HOM05D002459 ORTHO05D003006 5.6e-09 66.6 280 25.4
Zm00001eb403270 Zea mays HOM05D002310 ORTHO05D002326 5.6e-09 66.6 135 28.9
Lsat_1_v5_gn_7_67261 Lactuca sativa HOM05D002310 ORTHO05D002326 7.3e-09 66.2 141 31.9
Potri.010G087400 Populus trichocarpa HOM05D002310 ORTHO05D002326 7.3e-09 66.2 139 28.1
Glyma.10G248100 Glycine max HOM05D002310 ORTHO05D002326 9.6e-09 65.9 140 29.3
Sc15g0003290 Simmondsia chinensis HOM05D002310 ORTHO05D002326 1.3e-08 65.5 138 29.7
Atru.ctg752_3.77 Acer truncatum HOM05D002310 ORTHO05D002326 1.6e-08 65.1 140 25.7
ECA236G2382 Erigeron canadensis HOM05D002459 ORTHO05D003006 1.6e-08 65.1 261 23.8
Prupe.4G289100 Prunus persica HOM05D002459 ORTHO05D003006 1.6e-08 65.1 136 28.7
Sc21g0002080 Simmondsia chinensis HOM05D002459 ORTHO05D003006 1.6e-08 65.1 242 26.4
CBR_g26449 Chara braunii HOM05D002459 ORTHO05D000002 2.8e-08 64.3 130 30.0
AUR62006970 Chenopodium quinoa HOM05D002459 ORTHO05D003006 2.8e-08 64.3 267 24.0
FAN28G0087 Fragaria x ananassa HOM05D002459 ORTHO05D003006 2.8e-08 64.3 307 21.8
Gohir.A10G158600 Gossypium hirsutum HOM05D002459 ORTHO05D003006 2.8e-08 64.3 316 23.7
Gohir.A10G158700 Gossypium hirsutum HOM05D002459 ORTHO05D003006 2.8e-08 64.3 316 23.7
Gohir.D10G109900 Gossypium hirsutum HOM05D002459 ORTHO05D003006 2.8e-08 64.3 316 23.7
Gohir.D10G110000 Gossypium hirsutum HOM05D002459 ORTHO05D003006 2.8e-08 64.3 316 23.7
Gorai.011G121000 Gossypium raimondii HOM05D002459 ORTHO05D003006 2.8e-08 64.3 316 23.7
Gorai.011G121100 Gossypium raimondii HOM05D002459 ORTHO05D003006 2.8e-08 64.3 316 23.7
Rhsim04G0059000 Rhododendron simsii HOM05D002459 ORTHO05D003006 2.8e-08 64.3 102 32.4
ATR1089G015 Amborella trichopoda HOM05D002459 ORTHO05D003006 3.6e-08 63.9 139 30.9
DCAR_009620 Daucus carota HOM05D002459 ORTHO05D003006 3.6e-08 63.9 275 22.2
Gohir.D01G168400 Gossypium hirsutum HOM05D002459 ORTHO05D003006 3.6e-08 63.9 324 23.8
CSS0046129 Camellia sinensis var. sinensis HOM05D002459 ORTHO05D003006 4.8e-08 63.5 287 23.7
Medtr3g098240 Medicago truncatula HOM05D002459 ORTHO05D003006 4.8e-08 63.5 184 27.2
TAR376G0537 Trochodendron aralioides HOM05D002459 ORTHO05D003006 4.8e-08 63.5 258 26.4
FAN23G2218 Fragaria x ananassa HOM05D002459 ORTHO05D003006 6.2e-08 63.2 307 21.8
Gorai.002G209000 Gossypium raimondii HOM05D002459 ORTHO05D003006 6.2e-08 63.2 324 23.8
Os03g0159200 Oryza sativa ssp. japonica HOM05D002310 ORTHO05D002326 6.2e-08 63.2 135 28.1
MSTRG.21976 Avicennia marina HOM05D002459 ORTHO05D003006 8.1e-08 62.8 279 23.3
COL.COLO4_30890 Corchorus olitorius HOM05D002459 ORTHO05D003006 8.1e-08 62.8 155 27.7
Phvul.009G159600 Phaseolus vulgaris HOM05D002459 ORTHO05D003006 8.1e-08 62.8 276 24.6
SEGI_32121 Sequoiadendron giganteum HOM05D002459 ORTHO05D003006 8.1e-08 62.8 303 25.7
vmacro08855 Vaccinium macrocarpon HOM05D002459 ORTHO05D003006 8.1e-08 62.8 97 33.0
Gohir.A03G211000 Gossypium hirsutum HOM05D002459 ORTHO05D003006 1.1e-07 62.4 257 23.7
Nitab4.5_0000102g0250 Nicotiana tabacum HOM05D002459 ORTHO05D003006 1.1e-07 62.4 265 23.4
Pp3c5_15010 Physcomitrium patens HOM05D002459 ORTHO05D003006 1.1e-07 62.4 197 28.9
Aqoxy6G00039 Aquilegia oxysepala HOM05D002459 ORTHO05D003006 1.4e-07 62.0 239 26.8
Eucgr.H05056 Eucalyptus grandis HOM05D002459 ORTHO05D003006 1.4e-07 62.0 323 23.8
Gohir.D02G232600 Gossypium hirsutum HOM05D002459 ORTHO05D003006 1.4e-07 62.0 269 21.6
Lsat_1_v5_gn_7_45361 Lactuca sativa HOM05D002459 ORTHO05D003006 1.4e-07 62.0 278 23.7
Lj4A821T47 Lonicera japonica HOM05D002459 ORTHO05D003006 1.4e-07 62.0 334 21.9
PSO210G5621 Papaver somniferum HOM05D002459 ORTHO05D003006 1.4e-07 62.0 332 24.4
Ah.11g042130 Amaranthus hybridus HOM05D002459 ORTHO05D003006 1.8e-07 61.6 312 23.4
ECA240G0207 Erigeron canadensis HOM05D002459 ORTHO05D003006 1.8e-07 61.6 268 23.9
Gohir.D05G009600 Gossypium hirsutum HOM05D002459 ORTHO05D003006 1.8e-07 61.6 260 23.8
Gorai.009G009900 Gossypium raimondii HOM05D002459 ORTHO05D003006 1.8e-07 61.6 260 23.8
Lsat_1_v5_gn_5_79701 Lactuca sativa HOM05D002459 ORTHO05D003006 1.8e-07 61.6 169 27.2
Os12g0197500 Oryza sativa ssp. japonica HOM05D002459 ORTHO05D003006 1.8e-07 61.6 339 23.0
Rhsim04G0202200 Rhododendron simsii HOM05D002310 ORTHO05D002326 1.8e-07 61.6 140 25.0
Sc19g0004150 Simmondsia chinensis HOM05D002310 ORTHO05D002326 1.8e-07 61.6 140 29.3
TPR.G7788 Trifolium pratense HOM05D002459 ORTHO05D003006 1.8e-07 61.6 186 26.3
PSO210G2919 Papaver somniferum HOM05D002459 ORTHO05D003006 2.4e-07 61.2 330 23.9
Phvul.006G212600 Phaseolus vulgaris HOM05D002459 ORTHO05D003006 2.4e-07 61.2 180 29.4
Potri.003G021000 Populus trichocarpa HOM05D002459 ORTHO05D003006 2.4e-07 61.2 312 23.4
SalBow2G2239 Salvia bowleyana HOM05D002459 ORTHO05D003006 2.4e-07 61.2 281 24.6
Hund21762 Selenicereus undatus HOM05D002459 ORTHO05D003006 2.4e-07 61.2 269 23.8
Aqoxy5G01674 Aquilegia oxysepala HOM05D002459 ORTHO05D003006 3.1e-07 60.8 299 24.7
CiPaw.15G185000 Carya illinoinensis HOM05D002459 ORTHO05D003006 3.1e-07 60.8 329 22.8
COL.COLO4_17888 Corchorus olitorius HOM05D002459 ORTHO05D003006 3.1e-07 60.8 319 24.5
FvH4_1g25920 Fragaria vesca HOM05D002459 ORTHO05D003006 3.1e-07 60.8 307 21.8
Manes.04G095200 Manihot esculenta HOM05D002459 ORTHO05D003006 3.1e-07 60.8 163 27.6
TAR628G1469 Trochodendron aralioides HOM05D002459 ORTHO05D003006 3.1e-07 60.8 291 24.4
VMungo0251G2061 Vigna mungo HOM05D002459 ORTHO05D003006 3.1e-07 60.8 270 25.9
FAN19G1658 Fragaria x ananassa HOM05D002459 ORTHO05D003006 4.0e-07 60.5 307 21.8
Gorai.005G260400 Gossypium raimondii HOM05D002459 ORTHO05D003006 4.0e-07 60.5 269 21.6
Gorai.009G148800 Gossypium raimondii HOM05D002459 ORTHO05D003006 4.0e-07 60.5 255 23.1
Nitab4.5_0000027g0300 Nicotiana tabacum HOM05D002459 ORTHO05D003006 4.0e-07 60.5 276 25.7
Oeu032230.1 Olea europaea HOM05D002459 ORTHO05D003006 4.0e-07 60.5 178 27.5
PSO384G1216 Papaver somniferum HOM05D002459 ORTHO05D003006 4.0e-07 60.5 173 29.5
QL02p098579 Quercus lobata HOM05D002459 ORTHO05D003006 4.0e-07 60.5 285 22.1
SalBow2G3435 Salvia bowleyana HOM05D002310 ORTHO05D002326 4.0e-07 60.5 96 34.4
Zm00001eb264310 Zea mays HOM05D002459 ORTHO05D003006 4.0e-07 60.5 334 23.4
FAN26G2502 Fragaria x ananassa HOM05D002459 ORTHO05D003006 5.3e-07 60.1 307 21.5
Lj1g0008149 Lotus japonicus HOM05D002459 ORTHO05D003006 5.3e-07 60.1 277 24.2
Nn5g27205 Nelumbo nucifera HOM05D002459 ORTHO05D003006 5.3e-07 60.1 240 24.6
Solyc04g025300.3 Solanum lycopersicum HOM05D002459 ORTHO05D003006 5.3e-07 60.1 328 22.0
Sopen04g011950 Solanum pennellii HOM05D002459 ORTHO05D003006 5.3e-07 60.1 328 22.0
arahy.Tifrunner.gnm1.ann1.5P4QKH Arachis hypogaea HOM05D002310 ORTHO05D002326 6.9e-07 59.7 141 27.7
arahy.Tifrunner.gnm1.ann1.Q8TT5G Arachis hypogaea HOM05D002310 ORTHO05D002326 6.9e-07 59.7 141 27.7
Glyma.08G184600 Glycine max HOM05D002459 ORTHO05D003006 6.9e-07 59.7 334 25.1
Medtr3g098260 Medicago truncatula HOM05D002459 ORTHO05D003006 6.9e-07 59.7 274 24.1
Thecc.01G146500 Theobroma cacao HOM05D002459 ORTHO05D003006 6.9e-07 59.7 322 23.9
CANSAT54G2711 Cannabis sativa HOM05D002459 ORTHO05D003006 9.0e-07 59.3 184 23.9
Gohir.D05G144900 Gossypium hirsutum HOM05D002459 ORTHO05D003006 9.0e-07 59.3 258 24.0
Nitab4.5_0000218g0100 Nicotiana tabacum HOM05D002459 ORTHO05D003006 9.0e-07 59.3 334 23.7
Nitab4.5_0008981g0010 Nicotiana tabacum HOM05D002459 ORTHO05D003006 9.0e-07 59.3 276 25.4
TPR.G2066 Trifolium pratense HOM05D002459 ORTHO05D003006 9.0e-07 59.3 334 24.6
AagrBONN_evm.TU.Sc2ySwM_117.1896 Anthoceros agrestis HOM05D002459 ORTHO05D003006 1.2e-06 58.9 313 24.3
Carub.0006s2134 Capsella rubella HOM05D002459 ORTHO05D003006 1.2e-06 58.9 193 26.9
CAN.G10.9 Capsicum annuum HOM05D002459 ORTHO05D003006 1.2e-06 58.9 339 23.9
Duzib132G0430 Durio zibethinus HOM05D002459 ORTHO05D003006 1.2e-06 58.9 323 22.9
Sabra03G0137400 Salix brachista HOM05D002459 ORTHO05D003006 1.2e-06 58.9 194 26.8
Thecc.02G040600 Theobroma cacao HOM05D002459 ORTHO05D003006 1.2e-06 58.9 325 23.1
Atru.chr3.1464 Acer truncatum HOM05D002459 ORTHO05D003006 1.5e-06 58.5 262 23.7
arahy.Tifrunner.gnm1.ann1.QD9RQK Arachis hypogaea HOM05D002459 ORTHO05D003006 1.5e-06 58.5 178 26.4
Haze_19354 Corylus avellana HOM05D002459 ORTHO05D003006 1.5e-06 58.5 288 24.0
ECA234G2178 Erigeron canadensis HOM05D002459 ORTHO05D003006 1.5e-06 58.5 294 23.5
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 2.0e-06 58.2 178 25.8
MELO3C023207.2 Cucumis melo HOM05D002459 ORTHO05D003006 2.0e-06 58.2 331 21.5
Glyma.04G203600 Glycine max HOM05D002459 ORTHO05D003006 2.0e-06 58.2 276 23.2
MD03G1233800 Malus domestica HOM05D002459 ORTHO05D003006 2.0e-06 58.2 328 21.3
QL10p037432 Quercus lobata HOM05D002459 ORTHO05D003006 2.0e-06 58.2 318 22.6
Phvul.002G279500 Phaseolus vulgaris HOM05D002459 ORTHO05D003006 2.6e-06 57.8 264 24.2
Sabra03G0012200 Salix brachista HOM05D002459 ORTHO05D003006 2.6e-06 57.8 326 22.7
Actinidia19945 Actinidia chinensis HOM05D002459 ORTHO05D003006 3.4e-06 57.4 327 22.0
CANSAT78G0613 Cannabis sativa HOM05D002310 ORTHO05D002326 3.4e-06 57.4 97 28.9
Cfa020920 Carpinus fangiana HOM05D002459 ORTHO05D003006 3.4e-06 57.4 336 23.2
MD03G1212700 Malus domestica HOM05D002459 ORTHO05D003006 3.4e-06 57.4 326 21.8
Mapoly0004s0010 Marchantia polymorpha HOM05D002459 ORTHO05D002326 3.4e-06 57.4 161 28.0
PGR102G2142 Punica granatum HOM05D002459 ORTHO05D003006 3.4e-06 57.4 241 26.1
SalBow2G2283 Salvia bowleyana HOM05D002459 ORTHO05D003006 3.4e-06 57.4 278 24.1
Sc06g0005290 Simmondsia chinensis HOM05D002459 ORTHO05D003006 3.4e-06 57.4 321 23.1
TWI63G0704 Tripterygium wilfordii HOM05D002459 ORTHO05D003006 3.4e-06 57.4 281 24.9
VMungo1127G0706 Vigna mungo HOM05D002459 ORTHO05D003006 3.4e-06 57.4 283 23.7
CARHR189950 Cardamine hirsuta HOM05D002459 ORTHO05D003006 4.5e-06 57.0 333 23.4
Duzib052G0687 Durio zibethinus HOM05D002459 ORTHO05D003006 4.5e-06 57.0 340 22.6
Psat1g224240 Pisum sativum HOM05D002459 ORTHO05D003006 4.5e-06 57.0 335 23.6
Rhsim11G0171500 Rhododendron simsii HOM05D002459 ORTHO05D003006 4.5e-06 57.0 102 30.4
TWI79G0941 Tripterygium wilfordii HOM05D002459 ORTHO05D003006 4.5e-06 57.0 294 22.4
CBR_g48685 Chara braunii HOM05D002459 ORTHO05D003006 5.8e-06 56.6 94 34.0
AUR62006969 Chenopodium quinoa HOM05D002459 ORTHO05D003006 5.8e-06 56.6 330 20.3
Glyma.05G198500 Glycine max HOM05D002459 ORTHO05D003006 5.8e-06 56.6 262 25.2
Lalb_Chr23g0272791 Lupinus albus HOM05D002459 ORTHO05D003006 5.8e-06 56.6 315 22.9
MBI03_g05194_MAGBIO Magnolia biondii HOM05D002459 ORTHO05D003006 5.8e-06 56.6 318 22.0
Sabra01G0025900 Salix brachista HOM05D002459 ORTHO05D003006 5.8e-06 56.6 248 26.6
BolC7t44926H Brassica oleracea HOM05D002459 ORTHO05D003006 7.6e-06 56.2 283 21.9
Peaxi162Scf00651g00012 Petunia axillaris HOM05D002459 ORTHO05D003006 7.6e-06 56.2 319 25.1
Potri.001G037101 Populus trichocarpa HOM05D002459 ORTHO05D003006 7.6e-06 56.2 234 24.8
RcHm_v2.0_Chr3g0485061 Rosa chinensis HOM05D002459 ORTHO05D003006 7.6e-06 56.2 273 23.8
TWI31G0101 Tripterygium wilfordii HOM05D002459 ORTHO05D003006 7.6e-06 56.2 276 22.5
Hma1.2p1_0057F.1_g031880 Hydrangea macrophylla HOM05D002459 ORTHO05D003006 9.9e-06 55.8 336 22.3
Nitab4.5_0004892g0070 Nicotiana tabacum HOM05D002459 ORTHO05D003006 9.9e-06 55.8 197 25.4
Prupe.5G027600 Prunus persica HOM05D002459 ORTHO05D003006 9.9e-06 55.8 242 24.4
Sp2g23630 Schrenkiella parvula HOM05D002459 ORTHO05D003006 9.9e-06 55.8 312 22.4
TPR.G7802 Trifolium pratense HOM05D002459 ORTHO05D003006 9.9e-06 55.8 332 20.8


User provided reference genes

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