Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 7.7e-175 617.1 318 100.0
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 5.1e-86 322.0 318 58.2
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.6e-84 317.0 277 63.2
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.3e-81 307.4 291 60.1
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.3e-78 296.6 252 63.9
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.9e-64 250.4 211 61.6
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 5.5e-64 248.8 215 57.2
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 5.5e-64 248.8 208 61.1
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 9.4e-64 248.1 215 57.2
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 3.6e-63 246.1 234 56.0
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 4.7e-63 245.7 216 57.9
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 7.9e-63 245.0 236 53.8
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 7.9e-63 245.0 236 53.8
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.0e-62 244.6 233 54.1
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 3.0e-62 243.0 217 58.5
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 3.0e-62 243.0 236 54.2
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 3.0e-62 243.0 221 55.7
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 3.9e-62 242.7 235 54.5
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 3.9e-62 242.7 234 54.7
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 3.9e-62 242.7 216 57.9
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 5.1e-62 242.3 217 58.1
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 5.1e-62 242.3 226 54.9
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.1e-61 241.1 236 53.4
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 2.0e-61 240.4 239 54.0
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 2.0e-61 240.4 230 54.3
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.0e-61 240.4 219 56.6
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 2.0e-61 240.4 225 56.4
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.6e-61 240.0 236 53.4
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 2.6e-61 240.0 223 56.1
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 2.6e-61 240.0 249 51.8
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 3.3e-61 239.6 225 55.6
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 4.4e-61 239.2 239 54.0
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 4.4e-61 239.2 236 53.4
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 4.4e-61 239.2 228 55.3
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 5.7e-61 238.8 224 56.7
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 7.4e-61 238.4 242 53.3
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 7.4e-61 238.4 277 48.0
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 9.7e-61 238.0 235 53.2
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 9.7e-61 238.0 237 54.0
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 9.7e-61 238.0 236 53.0
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 9.7e-61 238.0 235 52.8
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 9.7e-61 238.0 226 54.9
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 9.7e-61 238.0 222 57.2
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 9.7e-61 238.0 234 53.0
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 9.7e-61 238.0 216 57.4
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 9.7e-61 238.0 230 56.1
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 1.3e-60 237.7 244 52.5
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.3e-60 237.7 226 55.8
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 1.7e-60 237.3 240 52.9
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.7e-60 237.3 229 53.7
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.7e-60 237.3 216 56.0
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 2.2e-60 236.9 213 55.9
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 2.2e-60 236.9 240 50.0
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 2.8e-60 236.5 236 53.8
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.8e-60 236.5 219 56.2
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 3.7e-60 236.1 254 51.6
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 3.7e-60 236.1 219 57.1
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 4.8e-60 235.7 242 51.7
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 6.3e-60 235.3 241 53.9
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 6.3e-60 235.3 227 52.0
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 8.2e-60 235.0 216 55.1
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 8.2e-60 235.0 236 54.2
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.4e-59 234.2 228 53.1
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 1.4e-59 234.2 233 52.4
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.4e-59 234.2 218 56.0
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 1.8e-59 233.8 222 54.5
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 1.8e-59 233.8 265 49.1
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 1.8e-59 233.8 224 55.8
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 2.4e-59 233.4 274 49.3
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 2.4e-59 233.4 232 54.3
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.1e-59 233.0 216 56.5
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 3.1e-59 233.0 235 50.6
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 3.1e-59 233.0 251 49.8
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 4.1e-59 232.6 226 53.5
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 7.0e-59 231.9 221 54.8
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 7.0e-59 231.9 234 53.0
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 9.1e-59 231.5 228 55.3
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 1.2e-58 231.1 229 52.0
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 1.5e-58 230.7 216 55.6
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 2.6e-58 229.9 214 57.0
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 3.5e-58 229.6 214 54.7
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 3.5e-58 229.6 227 51.5
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 3.5e-58 229.6 205 58.5
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 5.9e-58 228.8 237 51.9
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 5.9e-58 228.8 232 52.2
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.7e-58 228.4 217 54.4
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.0e-57 228.0 213 54.5
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.0e-57 228.0 215 55.8
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 1.3e-57 227.6 216 53.7
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.3e-57 227.6 247 49.4
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 5.0e-57 225.7 225 51.1
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 5.0e-57 225.7 225 51.6
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 3.2e-56 223.0 224 51.3
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.2e-55 221.1 226 52.7
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.6e-55 220.7 239 50.6
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 4.7e-55 219.2 196 57.7
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 2.3e-54 216.9 226 48.7
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 6.7e-54 215.3 235 48.9
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 2.0e-53 213.8 226 50.0
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 7.4e-53 211.8 204 54.4
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 9.7e-53 211.5 228 49.6
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.7e-52 210.7 230 49.1
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 8.2e-52 208.4 253 47.4
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.4e-51 207.6 232 49.1
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.1e-51 206.5 196 56.1
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.2e-50 204.5 223 51.1
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.5e-48 197.6 219 48.9
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 2.7e-47 193.4 193 53.4
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.0e-46 191.4 235 46.8
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 5.3e-43 179.1 196 50.5
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 7.7e-42 175.3 223 45.3
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 1.7e-41 174.1 189 49.7
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 1.7e-41 174.1 189 49.7
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 5.0e-41 172.6 195 47.2
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 3.4e-37 159.8 164 55.5
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 9.8e-37 158.3 167 52.7
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 2.8e-36 156.8 178 50.6
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 5.4e-35 152.5 257 40.5
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 5.4e-35 152.5 253 37.2
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 7.0e-35 152.1 231 41.1
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.6e-34 151.0 148 54.1
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.9e-33 146.7 123 59.3
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.4e-30 137.9 211 41.7
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.1e-27 126.7 173 42.2
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 7.8e-18 95.5 93 47.3
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.5e-16 91.3 58 65.5
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.3e-16 90.1 131 42.7
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.5e-13 81.3 47 72.3
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 1.4e-11 74.7 63 50.8
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.2e-11 73.6 187 32.1
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 8.6e-09 65.5 45 71.1
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 4.0e-06 56.6 52 53.8
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 5.2e-06 56.2 81 43.2
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 8.9e-06 55.5 38 73.7


User provided reference genes

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